A comprehensive draft genome sequence for lupin (Lupinus angustifolius), an emerging health food: insights into plant-microbe interactions and legume evolution

Publication Overview
TitleA comprehensive draft genome sequence for lupin (Lupinus angustifolius), an emerging health food: insights into plant-microbe interactions and legume evolution
AuthorsHane JK, Ming Y, Kamphuis LG, Nelson MN, Garg G, Atkins CA, Bayer PE, Bravo A, Bringans S, Cannon S, Edwards D, Foley R, Gao LL, Harrison MJ, Huang W, Hurgobin B, Li S, Liu CW, McGrath A, Morahan G, Murray J, Weller J, Jian J, Singh KB
TypeJournal Article
Journal NamePlant biotechnology journal
Volume15
Issue3
Year2017
Page(s)318-330
CitationHane JK, Ming Y, Kamphuis LG, Nelson MN, Garg G, Atkins CA, Bayer PE, Bravo A, Bringans S, Cannon S, Edwards D, Foley R, Gao LL, Harrison MJ, Huang W, Hurgobin B, Li S, Liu CW, McGrath A, Morahan G, Murray J, Weller J, Jian J, Singh KB. A comprehensive draft genome sequence for lupin (Lupinus angustifolius), an emerging health food: insights into plant-microbe interactions and legume evolution. Plant biotechnology journal. 2017 03; 15(3):318-330.

Abstract

Lupins are important grain legume crops that form a critical part of sustainable farming systems, reducing fertilizer use and providing disease breaks. It has a basal phylogenetic position relative to other crop and model legumes and a high speciation rate. Narrow-leafed lupin (NLL; Lupinus angustifolius L.) is gaining popularity as a health food, which is high in protein and dietary fibre but low in starch and gluten-free. We report the draft genome assembly (609 Mb) of NLL cultivar Tanjil, which has captured >98% of the gene content, sequences of additional lines and a dense genetic map. Lupins are unique among legumes and differ from most other land plants in that they do not form mycorrhizal associations. Remarkably, we find that NLL has lost all mycorrhiza-specific genes, but has retained genes commonly required for mycorrhization and nodulation. In addition, the genome also provided candidate genes for key disease resistance and domestication traits. We also find evidence of a whole-genome triplication at around 25 million years ago in the genistoid lineage leading to Lupinus. Our results will support detailed studies of legume evolution and accelerate lupin breeding programmes.

Stocks
This publication contains information about 5 stocks:
Stock NameUniquenameType
P27255P27255accession
83A:47683A:476accession
83A:476/P27255-RIL83A:476/P27255-RILpopulation
TanjilTanjilaccession
83A:476/P27255-RIL-201783A:476/P27255-RIL-2017population
Features
This publication contains information about 9,412 features:
Feature NameUniquenameType
LaDArT_PAV26168LaDArT_PAV26168genetic_marker
LaDArT_PAV26178LaDArT_PAV26178genetic_marker
LaDArT_PAV26179LaDArT_PAV26179genetic_marker
LaDArT_PAV26183LaDArT_PAV26183genetic_marker
LaDArT_PAV26189LaDArT_PAV26189genetic_marker
LaDArT_PAV26190LaDArT_PAV26190genetic_marker
LaDArT_PAV26195LaDArT_PAV26195genetic_marker
LaDArT_PAV26206LaDArT_PAV26206genetic_marker
LaDArT_PAV26209LaDArT_PAV26209genetic_marker
LaDArT_PAV26213LaDArT_PAV26213genetic_marker
LaDArT_PAV26217LaDArT_PAV26217genetic_marker
LaDArT_PAV26218LaDArT_PAV26218genetic_marker
LaDArT_PAV26220LaDArT_PAV26220genetic_marker
LaDArT_PAV26225LaDArT_PAV26225genetic_marker
LaDArT_PAV26226LaDArT_PAV26226genetic_marker
LaDArT_PAV26228LaDArT_PAV26228genetic_marker
LaDArT_PAV26243LaDArT_PAV26243genetic_marker
LaDArT_PAV26254LaDArT_PAV26254genetic_marker
LaDArT_PAV26263LaDArT_PAV26263genetic_marker
LaDArT_PAV26264LaDArT_PAV26264genetic_marker
LaDArT_PAV26265LaDArT_PAV26265genetic_marker
LaDArT_PAV26266LaDArT_PAV26266genetic_marker
LaDArT_PAV26275LaDArT_PAV26275genetic_marker
LaDArT_PAV26276LaDArT_PAV26276genetic_marker
LaDArT_PAV26277LaDArT_PAV26277genetic_marker

Pages

Featuremaps
This publication contains information about 1 maps:
Map Name
Lupin-83A:476/P27255-RIL-2017
Properties
Additional details for this publication include:
Property NameValue
URLhttps://onlinelibrary.wiley.com/doi/full/10.1111/pbi.12615
Publication ModelPrint-Electronic
ISSN1467-7652
Language Abbreng
LanguageEnglish
Journal CountryEngland
eISSN1467-7652
DOI10.1111/pbi.12615
Journal AbbreviationPlant Biotechnol. J.
Publication Date2017 03
Publication TypeJournal Article
Copyright© 2016 The Authors. Plant Biotechnology Journal published by Society for Experimental Biology and The Association of Applied Biologists and John Wiley & Sons Ltd.
Elocation10.1111/pbi.12615
Publication TypeResearch Support, Non-U.S. Gov't