A comprehensive draft genome sequence for lupin (Lupinus angustifolius), an emerging health food: insights into plant-microbe interactions and legume evolution

Publication Overview
TitleA comprehensive draft genome sequence for lupin (Lupinus angustifolius), an emerging health food: insights into plant-microbe interactions and legume evolution
AuthorsHane JK, Ming Y, Kamphuis LG, Nelson MN, Garg G, Atkins CA, Bayer PE, Bravo A, Bringans S, Cannon S, Edwards D, Foley R, Gao LL, Harrison MJ, Huang W, Hurgobin B, Li S, Liu CW, McGrath A, Morahan G, Murray J, Weller J, Jian J, Singh KB
TypeJournal Article
Journal NamePlant biotechnology journal
Volume15
Issue3
Year2017
Page(s)318-330
CitationHane JK, Ming Y, Kamphuis LG, Nelson MN, Garg G, Atkins CA, Bayer PE, Bravo A, Bringans S, Cannon S, Edwards D, Foley R, Gao LL, Harrison MJ, Huang W, Hurgobin B, Li S, Liu CW, McGrath A, Morahan G, Murray J, Weller J, Jian J, Singh KB. A comprehensive draft genome sequence for lupin (Lupinus angustifolius), an emerging health food: insights into plant-microbe interactions and legume evolution. Plant biotechnology journal. 2017 03; 15(3):318-330.

Abstract

Lupins are important grain legume crops that form a critical part of sustainable farming systems, reducing fertilizer use and providing disease breaks. It has a basal phylogenetic position relative to other crop and model legumes and a high speciation rate. Narrow-leafed lupin (NLL; Lupinus angustifolius L.) is gaining popularity as a health food, which is high in protein and dietary fibre but low in starch and gluten-free. We report the draft genome assembly (609 Mb) of NLL cultivar Tanjil, which has captured >98% of the gene content, sequences of additional lines and a dense genetic map. Lupins are unique among legumes and differ from most other land plants in that they do not form mycorrhizal associations. Remarkably, we find that NLL has lost all mycorrhiza-specific genes, but has retained genes commonly required for mycorrhization and nodulation. In addition, the genome also provided candidate genes for key disease resistance and domestication traits. We also find evidence of a whole-genome triplication at around 25 million years ago in the genistoid lineage leading to Lupinus. Our results will support detailed studies of legume evolution and accelerate lupin breeding programmes.

Stocks
This publication contains information about 5 stocks:
Stock NameUniquenameType
P27255P27255accession
83A:47683A:476accession
83A:476/P27255-RIL83A:476/P27255-RILpopulation
TanjilTanjilaccession
83A:476/P27255-RIL-201783A:476/P27255-RIL-2017population
Features
This publication contains information about 9,412 features:
Feature NameUniquenameType
LaDArT_SNP14574LaDArT_SNP14574genetic_marker
LaDArT_SNP14582LaDArT_SNP14582genetic_marker
LaDArT_SNP14591LaDArT_SNP14591genetic_marker
LaDArT_SNP14593LaDArT_SNP14593genetic_marker
LaDArT_SNP14601LaDArT_SNP14601genetic_marker
LaDArT_SNP14604LaDArT_SNP14604genetic_marker
LaDArT_SNP14615LaDArT_SNP14615genetic_marker
LaDArT_SNP14625LaDArT_SNP14625genetic_marker
LaDArT_SNP14631LaDArT_SNP14631genetic_marker
LaDArT_SNP14632LaDArT_SNP14632genetic_marker
LaDArT_SNP14644LaDArT_SNP14644genetic_marker
LaDArT_SNP14653LaDArT_SNP14653genetic_marker
LaDArT_SNP14662LaDArT_SNP14662genetic_marker
LaDArT_SNP14663LaDArT_SNP14663genetic_marker
LaDArT_SNP14664LaDArT_SNP14664genetic_marker
LaDArT_SNP14668LaDArT_SNP14668genetic_marker
LaDArT_SNP14670LaDArT_SNP14670genetic_marker
LaDArT_SNP14675LaDArT_SNP14675genetic_marker
LaDArT_SNP14690LaDArT_SNP14690genetic_marker
LaDArT_SNP14694LaDArT_SNP14694genetic_marker
LaDArT_SNP14710LaDArT_SNP14710genetic_marker
LaDArT_SNP14716LaDArT_SNP14716genetic_marker
LaDArT_SNP14724LaDArT_SNP14724genetic_marker
LaDArT_SNP14726LaDArT_SNP14726genetic_marker
LaDArT_SNP14731LaDArT_SNP14731genetic_marker

Pages

Featuremaps
This publication contains information about 1 maps:
Map Name
Lupin-83A:476/P27255-RIL-2017
Properties
Additional details for this publication include:
Property NameValue
URLhttps://onlinelibrary.wiley.com/doi/full/10.1111/pbi.12615
Publication ModelPrint-Electronic
ISSN1467-7652
Language Abbreng
LanguageEnglish
Journal CountryEngland
eISSN1467-7652
DOI10.1111/pbi.12615
Journal AbbreviationPlant Biotechnol. J.
Publication Date2017 03
Publication TypeJournal Article
Copyright© 2016 The Authors. Plant Biotechnology Journal published by Society for Experimental Biology and The Association of Applied Biologists and John Wiley & Sons Ltd.
Elocation10.1111/pbi.12615
Publication TypeResearch Support, Non-U.S. Gov't