Lens_culinaris_v1_Contig212

Contig Overview


Name	Lens_culinaris_v1_Contig212
Unique Name	Lens_culinaris_v1_Contig212
Type	contig
Organism	Lens culinaris (lentil)
Sequence length	785

Unigenes

This contig is part of the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
Lens culinaris unigene v1	Lens culinaris unigene v1	contig

Relationships

The following EST feature(s) are a part of this contig:


Feature Name	Unique Name	Species	Type
GT625337	GT625337	Lens culinaris	EST
GT621785	GT621785	Lens culinaris	EST
GT626186	GT626186	Lens culinaris	EST
GT626678	GT626678	Lens culinaris	EST
GT626220	GT626220	Lens culinaris	EST

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Lens culinaris unigene v1	2010-12-27
Homology Analysis: Lens culinaris unigene v1 vs Swissprot	2010-12-28
Homology Analysis: Lens culinaris unigene v1 vs Trembl	2010-12-28
KEGG analysis for Lens culinaris unigene v1	2011-01-05
Homology Analysis: Lens culinaris unigene v1 vs TAIR 10 peptide	2011-02-03
InterProScan analysis for Lens culinaris unigene v1	2011-01-06

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
GT625337	EST	GT625337:1..656 +
GT621785	EST	GT621785:9..743 +
GT626186	EST	GT626186:25..741 +
GT626678	EST	GT626678:200..716 +
GT626220	EST	GT626220:17..785 +

Homology

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BLAST of Lens_culinaris_v1_Contig212 vs. SwissProt
Match: RS12_HORVU (40S ribosomal protein S12 OS=Hordeum vulgare GN=RPS12 PE=2 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 5.982e-51
Identity = 95/120 (79.17%), Postives = 107/120 (89.17%), Query Frame = 3

Query:  174 MDIMTALQLVLRKSRAYGGLARGLHEGAKVIEKHAGQLCVLAEDCDQPDYVKLVKALCAEHNVSLLTVPSAKTLGEWAGLCKIDSEGKARKVTGCSCVVVKDFGEEHEAYNVVLQHVKAQ 533
            MD+MTALQLV++KS A+ GL +GL E AK IEKHA QLCVLAEDCDQPDYVKLVKALCAEHNV L+TVPSAKTLGEWAGLCKID+EGKARKV GCSC+VVKD+GEE E  N+V Q+VK+Q
Sbjct:   24 MDLMTALQLVMKKSSAHDGLVKGLREAAKSIEKHAAQLCVLAEDCDQPDYVKLVKALCAEHNVHLVTVPSAKTLGEWAGLCKIDTEGKARKVVGCSCIVVKDYGEESEGLNIVQQYVKSQ 143

[Close]

BLAST of Lens_culinaris_v1_Contig212 vs. SwissProt
Match: RS122_ARATH (40S ribosomal protein S12-2 OS=Arabidopsis thaliana GN=RPS12C PE=2 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 2.128e-48
Identity = 89/117 (76.07%), Postives = 103/117 (88.03%), Query Frame = 3

Query:  174 MDIMTALQLVLRKSRAYGGLARGLHEGAKVIEKHAGQLCVLAEDCDQPDYVKLVKALCAEHNVSLLTVPSAKTLGEWAGLCKIDSEGKARKVTGCSCVVVKDFGEEHEAYNVVLQHV 524
            MD+ TAL+L +RKSRAYGG+ RGLHE AK+IEK   QLCVLAEDC+QPDYVKLVKALCA+H++ LLTVPSAKTLGEWAGLCKIDSEG ARKV GCSC+V+KDFGEE  A N+V +H+
Sbjct:   25 MDVSTALELTVRKSRAYGGVVRGLHESAKLIEKRNAQLCVLAEDCNQPDYVKLVKALCADHSIKLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCSCLVIKDFGEETTALNIVKKHL 141

[Close]

BLAST of Lens_culinaris_v1_Contig212 vs. SwissProt
Match: RS121_ARATH (40S ribosomal protein S12-1 OS=Arabidopsis thaliana GN=RPS12A PE=2 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 8.085e-48
Identity = 91/120 (75.83%), Postives = 104/120 (86.67%), Query Frame = 3

Query:  174 MDIMTALQLVLRKSRAYGGLARGLHEGAKVIEKHAGQLCVLAEDCDQPDYVKLVKALCAEHNVSLLTVPSAKTLGEWAGLCKIDSEGKARKVTGCSCVVVKDFGEEHEAYNVVLQHVKAQ 533
            MD+MTAL+L LRK+RAYGG+ RGLHE AK+IEK   QL VLAEDC+QPDYVKLVKALCA+H V LLTVPSAKTLGEWAGLCKIDSEG ARKV GCSC+VVKDFGEE  A ++V +H+ +Q
Sbjct:   25 MDLMTALELTLRKARAYGGVVRGLHECAKLIEKRVAQLVVLAEDCNQPDYVKLVKALCADHEVRLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCSCLVVKDFGEETTALSIVNKHIASQ 144

[Close]

BLAST of Lens_culinaris_v1_Contig212 vs. SwissProt
Match: RS12_PIG (40S ribosomal protein S12 OS=Sus scrofa GN=RPS12 PE=2 SV=2)

HSP 1 Score: 149.058 bits (375), Expect = 2.698e-35
Identity = 69/120 (57.50%), Postives = 90/120 (75.00%), Query Frame = 3

Query:  174 MDIMTALQLVLRKSRAYGGLARGLHEGAKVIEKHAGQLCVLAEDCDQPDYVKLVKALCAEHNVSLLTVPSAKTLGEWAGLCKIDSEGKARKVTGCSCVVVKDFGEEHEAYNVVLQHVKAQ 533
            MD+ TALQ VL+ +  + GLARG+ E AK ++K    LCVLA +CD+P YVKLV+ALCAEH ++L+ V   K LGEW GLCKID EGK RKV GCSCVVVKD+G+E +A +V+ ++ K +
Sbjct:   12 MDVNTALQEVLKTALIHDGLARGIREAAKALDKRQAHLCVLASNCDEPMYVKLVEALCAEHQINLIKVDDNKKLGEWVGLCKIDREGKPRKVVGCSCVVVKDYGKESQAKDVIEEYFKCK 131

[Close]

BLAST of Lens_culinaris_v1_Contig212 vs. SwissProt
Match: RS12_HUMAN (40S ribosomal protein S12 OS=Homo sapiens GN=RPS12 PE=1 SV=3)

HSP 1 Score: 149.058 bits (375), Expect = 2.698e-35
Identity = 69/120 (57.50%), Postives = 90/120 (75.00%), Query Frame = 3

Query:  174 MDIMTALQLVLRKSRAYGGLARGLHEGAKVIEKHAGQLCVLAEDCDQPDYVKLVKALCAEHNVSLLTVPSAKTLGEWAGLCKIDSEGKARKVTGCSCVVVKDFGEEHEAYNVVLQHVKAQ 533
            MD+ TALQ VL+ +  + GLARG+ E AK ++K    LCVLA +CD+P YVKLV+ALCAEH ++L+ V   K LGEW GLCKID EGK RKV GCSCVVVKD+G+E +A +V+ ++ K +
Sbjct:   12 MDVNTALQEVLKTALIHDGLARGIREAAKALDKRQAHLCVLASNCDEPMYVKLVEALCAEHQINLIKVDDNKKLGEWVGLCKIDREGKPRKVVGCSCVVVKDYGKESQAKDVIEEYFKCK 131

[Close]

BLAST of Lens_culinaris_v1_Contig212 vs. SwissProt
Match: RS12_CYAPA (40S ribosomal protein S12 OS=Cyanophora paradoxa GN=RPS12 PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.698e-35
Identity = 68/118 (57.63%), Postives = 90/118 (76.27%), Query Frame = 3

Query:  174 MDIMTALQLVLRKSRAYGGLARGLHEGAKVIEKHAGQLCVLAEDCDQPDYVKLVKALCAEHNVSLLTVPSAKTLGEWAGLCKIDSEGKARKVTGCSCVVVKDFGEEHEAYNVVLQHVK 527
            MD+MTAL+ VL+K+    GL RGLHE AK +++ + QLCVLA + ++P Y +LV+ALCAEH ++L+ VP  K LGEW GLCKID EGKARKV GCSC V+  FGEE EA  V+++++K
Sbjct:   17 MDVMTALKEVLKKAMVVDGLKRGLHECAKALDQRSAQLCVLAANVNEPAYTRLVEALCAEHGINLIKVPENKQLGEWVGLCKIDKEGKARKVVGCSCAVITKFGEESEARQVLMEYLK 134

[Close]

BLAST of Lens_culinaris_v1_Contig212 vs. SwissProt
Match: RS12_CHICK (40S ribosomal protein S12 OS=Gallus gallus GN=RPS12 PE=1 SV=2)

HSP 1 Score: 149.058 bits (375), Expect = 2.698e-35
Identity = 69/120 (57.50%), Postives = 90/120 (75.00%), Query Frame = 3

Query:  174 MDIMTALQLVLRKSRAYGGLARGLHEGAKVIEKHAGQLCVLAEDCDQPDYVKLVKALCAEHNVSLLTVPSAKTLGEWAGLCKIDSEGKARKVTGCSCVVVKDFGEEHEAYNVVLQHVKAQ 533
            MD+ TALQ VL+ +  + GLARG+ E AK ++K    LCVLA +CD+P YVKLV+ALCAEH ++L+ V   K LGEW GLCKID EGK RKV GCSCVVVKD+G+E +A +V+ ++ K +
Sbjct:   12 MDVNTALQEVLKTALIHDGLARGIREAAKALDKRQAHLCVLASNCDEPMYVKLVEALCAEHQINLIKVDDNKKLGEWVGLCKIDREGKPRKVVGCSCVVVKDYGKESQAKDVIEEYFKCK 131

[Close]

BLAST of Lens_culinaris_v1_Contig212 vs. SwissProt
Match: RS12_BOVIN (40S ribosomal protein S12 OS=Bos taurus GN=RPS12 PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.698e-35
Identity = 69/120 (57.50%), Postives = 90/120 (75.00%), Query Frame = 3

Query:  174 MDIMTALQLVLRKSRAYGGLARGLHEGAKVIEKHAGQLCVLAEDCDQPDYVKLVKALCAEHNVSLLTVPSAKTLGEWAGLCKIDSEGKARKVTGCSCVVVKDFGEEHEAYNVVLQHVKAQ 533
            MD+ TALQ VL+ +  + GLARG+ E AK ++K    LCVLA +CD+P YVKLV+ALCAEH ++L+ V   K LGEW GLCKID EGK RKV GCSCVVVKD+G+E +A +V+ ++ K +
Sbjct:   12 MDVNTALQEVLKTALIHDGLARGIREAAKALDKRQAHLCVLASNCDEPMYVKLVEALCAEHQINLIKVDDNKKLGEWVGLCKIDREGKPRKVVGCSCVVVKDYGKESQAKDVIEEYFKCK 131

[Close]

BLAST of Lens_culinaris_v1_Contig212 vs. SwissProt
Match: RS12_RAT (40S ribosomal protein S12 OS=Rattus norvegicus GN=Rps12 PE=1 SV=2)

HSP 1 Score: 145.206 bits (365), Expect = 3.895e-34
Identity = 68/120 (56.67%), Postives = 89/120 (74.17%), Query Frame = 3

Query:  174 MDIMTALQLVLRKSRAYGGLARGLHEGAKVIEKHAGQLCVLAEDCDQPDYVKLVKALCAEHNVSLLTVPSAKTLGEWAGLCKIDSEGKARKVTGCSCVVVKDFGEEHEAYNVVLQHVKAQ 533
            MD+ TALQ VL+ +  + GLARG+ E AK ++K    LCVLA +CD+P YVKLV+AL AEH ++L+ V   K LGEW GLCKID EGK RKV GCSCVVVKD+G+E +A +V+ ++ K +
Sbjct:   12 MDVNTALQEVLKTALIHDGLARGIREAAKALDKRQAHLCVLASNCDEPMYVKLVEALLAEHQINLIKVDDNKKLGEWVGLCKIDREGKPRKVVGCSCVVVKDYGKESQAKDVIEEYFKCK 131

[Close]

BLAST of Lens_culinaris_v1_Contig212 vs. SwissProt
Match: RS12_MOUSE (40S ribosomal protein S12 OS=Mus musculus GN=Rps12 PE=1 SV=2)

HSP 1 Score: 145.206 bits (365), Expect = 3.895e-34
Identity = 68/120 (56.67%), Postives = 89/120 (74.17%), Query Frame = 3

Query:  174 MDIMTALQLVLRKSRAYGGLARGLHEGAKVIEKHAGQLCVLAEDCDQPDYVKLVKALCAEHNVSLLTVPSAKTLGEWAGLCKIDSEGKARKVTGCSCVVVKDFGEEHEAYNVVLQHVKAQ 533
            MD+ TALQ VL+ +  + GLARG+ E AK ++K    LCVLA +CD+P YVKLV+AL AEH ++L+ V   K LGEW GLCKID EGK RKV GCSCVVVKD+G+E +A +V+ ++ K +
Sbjct:   12 MDVNTALQEVLKTALIHDGLARGIREAAKALDKRQAHLCVLASNCDEPMYVKLVEALLAEHQINLIKVDDNKKLGEWVGLCKIDREGKPRKVVGCSCVVVKDYGKESQAKDVIEEYFKCK 131

[Close]

BLAST of Lens_culinaris_v1_Contig212 vs. TrEMBL
Match: C6T064_SOYBN (40S ribosomal protein S12 OS=Glycine max PE=2 SV=1)

HSP 1 Score: 238.424 bits (607), Expect = 5.208e-61
Identity = 117/119 (98.32%), Postives = 117/119 (98.32%), Query Frame = 3

Query:  174 MDIMTALQLVLRKSRAYGGLARGLHEGAKVIEKHAGQLCVLAEDCDQPDYVKLVKALCAEHNVSLLTVPSAKTLGEWAGLCKIDSEGKARKVTGCSCVVVKDFGEEHEAYNVVLQHVKA 530
            MDIMTALQLVLRKS AYGGLARGLHEGAKVIEKHA QLCVLAEDCDQPDYVKLVKALCAEHNVSLLTVPSAKTLGEWAGLCKIDSEGKARKVTGCSCVVVKDFGEEHEAYNVVLQHVKA
Sbjct:   22 MDIMTALQLVLRKSLAYGGLARGLHEGAKVIEKHAAQLCVLAEDCDQPDYVKLVKALCAEHNVSLLTVPSAKTLGEWAGLCKIDSEGKARKVTGCSCVVVKDFGEEHEAYNVVLQHVKA 140

[Close]

BLAST of Lens_culinaris_v1_Contig212 vs. TrEMBL
Match: C6SVV7_SOYBN (40S ribosomal protein S12 OS=Glycine max PE=2 SV=1)

HSP 1 Score: 238.424 bits (607), Expect = 5.208e-61
Identity = 117/119 (98.32%), Postives = 117/119 (98.32%), Query Frame = 3

Query:  174 MDIMTALQLVLRKSRAYGGLARGLHEGAKVIEKHAGQLCVLAEDCDQPDYVKLVKALCAEHNVSLLTVPSAKTLGEWAGLCKIDSEGKARKVTGCSCVVVKDFGEEHEAYNVVLQHVKA 530
            MDIMTALQLVLRKS AYGGLARGLHEGAKVIEKHA QLCVLAEDCDQPDYVKLVKALCAEHNVSLLTVPSAKTLGEWAGLCKIDSEGKARKVTGCSCVVVKDFGEEHEAYNVVLQHVKA
Sbjct:   22 MDIMTALQLVLRKSLAYGGLARGLHEGAKVIEKHAAQLCVLAEDCDQPDYVKLVKALCAEHNVSLLTVPSAKTLGEWAGLCKIDSEGKARKVTGCSCVVVKDFGEEHEAYNVVLQHVKA 140

[Close]

BLAST of Lens_culinaris_v1_Contig212 vs. TrEMBL
Match: C6SW79_SOYBN (40S ribosomal protein S12 OS=Glycine max PE=2 SV=1)

HSP 1 Score: 236.498 bits (602), Expect = 1.979e-60
Identity = 116/120 (96.67%), Postives = 117/120 (97.50%), Query Frame = 3

Query:  174 MDIMTALQLVLRKSRAYGGLARGLHEGAKVIEKHAGQLCVLAEDCDQPDYVKLVKALCAEHNVSLLTVPSAKTLGEWAGLCKIDSEGKARKVTGCSCVVVKDFGEEHEAYNVVLQHVKAQ 533
            MDIMTALQLVL KS AYGGLARGLHEGAKVIEKHA QLCVLAEDCDQPDYVKLVKALCAEHNVSLLTVPSAKTLGEWAGLCKIDSEGKARKVTGCSCVVVKDFGEEHEAYNVVLQHVK+Q
Sbjct:   21 MDIMTALQLVLGKSLAYGGLARGLHEGAKVIEKHAAQLCVLAEDCDQPDYVKLVKALCAEHNVSLLTVPSAKTLGEWAGLCKIDSEGKARKVTGCSCVVVKDFGEEHEAYNVVLQHVKSQ 140

[Close]

BLAST of Lens_culinaris_v1_Contig212 vs. TrEMBL
Match: B9GT02_POPTR (40S ribosomal protein S12 OS=Populus trichocarpa GN=POPTRDRAFT_551211 PE=3 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 9.512e-55
Identity = 105/119 (88.24%), Postives = 113/119 (94.96%), Query Frame = 3

Query:  174 MDIMTALQLVLRKSRAYGGLARGLHEGAKVIEKHAGQLCVLAEDCDQPDYVKLVKALCAEHNVSLLTVPSAKTLGEWAGLCKIDSEGKARKVTGCSCVVVKDFGEEHEAYNVVLQHVKA 530
            MD+MTALQLVLRKS A+GGL+RGLHEGAKVIEKHA QLCVLAEDC+QPDYVKLVKALCA+HNV+LLTVPSAKTLGEWAGLCKIDSEGKARKV GCSCVVVKDFGE+ EA NV+ QHVKA
Sbjct:   26 MDLMTALQLVLRKSLAHGGLSRGLHEGAKVIEKHAAQLCVLAEDCNQPDYVKLVKALCADHNVNLLTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDTEALNVIQQHVKA 144

[Close]

BLAST of Lens_culinaris_v1_Contig212 vs. TrEMBL
Match: A9P9K3_POPTR (40S ribosomal protein S12 OS=Populus trichocarpa PE=2 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 9.512e-55
Identity = 105/119 (88.24%), Postives = 113/119 (94.96%), Query Frame = 3

Query:  174 MDIMTALQLVLRKSRAYGGLARGLHEGAKVIEKHAGQLCVLAEDCDQPDYVKLVKALCAEHNVSLLTVPSAKTLGEWAGLCKIDSEGKARKVTGCSCVVVKDFGEEHEAYNVVLQHVKA 530
            MD+MTALQLVLRKS A+GGL+RGLHEGAKVIEKHA QLCVLAEDC+QPDYVKLVKALCA+HNV+LLTVPSAKTLGEWAGLCKIDSEGKARKV GCSCVVVKDFGE+ EA NV+ QHVKA
Sbjct:   25 MDLMTALQLVLRKSLAHGGLSRGLHEGAKVIEKHAAQLCVLAEDCNQPDYVKLVKALCADHNVNLLTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDTEALNVIQQHVKA 143

[Close]

BLAST of Lens_culinaris_v1_Contig212 vs. TrEMBL
Match: D7U865_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_70.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00034219001 PE=4 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 8.053e-54
Identity = 105/119 (88.24%), Postives = 111/119 (93.28%), Query Frame = 3

Query:  174 MDIMTALQLVLRKSRAYGGLARGLHEGAKVIEKHAGQLCVLAEDCDQPDYVKLVKALCAEHNVSLLTVPSAKTLGEWAGLCKIDSEGKARKVTGCSCVVVKDFGEEHEAYNVVLQHVKA 530
            MD+MTALQLVLRKS A+GGLARGLHEGAKVIEKHA  LCVLAEDC+QPDYVKLVKALCA+HNVSL+TVPSAKTLGEWAGLCKIDSEGKARKV GCSCVVVKDFGEE EA NVV Q VK+
Sbjct:  109 MDLMTALQLVLRKSLAHGGLARGLHEGAKVIEKHAAHLCVLAEDCNQPDYVKLVKALCADHNVSLITVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEETEAMNVVQQQVKS 227

[Close]

BLAST of Lens_culinaris_v1_Contig212 vs. TrEMBL
Match: A9PJY6_9ROSI (40S ribosomal protein S12 OS=Populus trichocarpa x Populus deltoides PE=2 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 6.817e-53
Identity = 101/119 (84.87%), Postives = 111/119 (93.28%), Query Frame = 3

Query:  174 MDIMTALQLVLRKSRAYGGLARGLHEGAKVIEKHAGQLCVLAEDCDQPDYVKLVKALCAEHNVSLLTVPSAKTLGEWAGLCKIDSEGKARKVTGCSCVVVKDFGEEHEAYNVVLQHVKA 530
            MD+MTALQLVLRKS A+GGL+RGLHEGAK+IEKH  QLCVLAEDC+QPDYVKLVKALCA+H V+LL+VPSAKTLGEWAGLCKIDSEGKARKV GCSCVVVKDFGE+ EA NVV QH+KA
Sbjct:   29 MDLMTALQLVLRKSLAHGGLSRGLHEGAKMIEKHTAQLCVLAEDCNQPDYVKLVKALCADHKVNLLSVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDSEALNVVQQHIKA 147

[Close]

BLAST of Lens_culinaris_v1_Contig212 vs. TrEMBL
Match: A9PDC2_POPTR (40S ribosomal protein S12 OS=Populus trichocarpa GN=POPTRDRAFT_714910 PE=2 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 6.817e-53
Identity = 101/119 (84.87%), Postives = 111/119 (93.28%), Query Frame = 3

Query:  174 MDIMTALQLVLRKSRAYGGLARGLHEGAKVIEKHAGQLCVLAEDCDQPDYVKLVKALCAEHNVSLLTVPSAKTLGEWAGLCKIDSEGKARKVTGCSCVVVKDFGEEHEAYNVVLQHVKA 530
            MD+MTALQLVLRKS A+GGL+RGLHEGAK+IEKH  QLCVLAEDC+QPDYVKLVKALCA+H V+LL+VPSAKTLGEWAGLCKIDSEGKARKV GCSCVVVKDFGE+ EA NVV QH+KA
Sbjct:   27 MDLMTALQLVLRKSLAHGGLSRGLHEGAKMIEKHTAQLCVLAEDCNQPDYVKLVKALCADHKVNLLSVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDSEALNVVQQHIKA 145

[Close]

BLAST of Lens_culinaris_v1_Contig212 vs. TrEMBL
Match: B9PB63_POPTR (40S ribosomal protein S12 (Fragment) OS=Populus trichocarpa GN=POPTRDRAFT_948722 PE=3 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 1.519e-52
Identity = 101/119 (84.87%), Postives = 109/119 (91.60%), Query Frame = 3

Query:  174 MDIMTALQLVLRKSRAYGGLARGLHEGAKVIEKHAGQLCVLAEDCDQPDYVKLVKALCAEHNVSLLTVPSAKTLGEWAGLCKIDSEGKARKVTGCSCVVVKDFGEEHEAYNVVLQHVKA 530
            MD+MTALQLVL+KS A+GGLARGLHEGAKVIEKHA QLCVLAEDC+QPDYVKLVKALCA+H V LL VPSAKTLGEWAGLCKIDSEGKARKV GCSCVVVKD+GE  E YNVV +HVK+
Sbjct:   12 MDLMTALQLVLKKSLAHGGLARGLHEGAKVIEKHAAQLCVLAEDCNQPDYVKLVKALCADHGVGLLMVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDYGETSEGYNVVQEHVKS 130

[Close]

BLAST of Lens_culinaris_v1_Contig212 vs. TrEMBL
Match: B9GVJ7_POPTR (40S ribosomal protein S12 (Fragment) OS=Populus trichocarpa GN=POPTRDRAFT_853195 PE=3 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 1.519e-52
Identity = 101/119 (84.87%), Postives = 109/119 (91.60%), Query Frame = 3

Query:  174 MDIMTALQLVLRKSRAYGGLARGLHEGAKVIEKHAGQLCVLAEDCDQPDYVKLVKALCAEHNVSLLTVPSAKTLGEWAGLCKIDSEGKARKVTGCSCVVVKDFGEEHEAYNVVLQHVKA 530
            MD+MTALQLVL+KS A+GGLARGLHEGAKVIEKHA QLCVLAEDC+QPDYVKLVKALCA+H V LL VPSAKTLGEWAGLCKIDSEGKARKV GCSCVVVKD+GE  E YNVV +HVK+
Sbjct:   14 MDLMTALQLVLKKSLAHGGLARGLHEGAKVIEKHAAQLCVLAEDCNQPDYVKLVKALCADHGVGLLMVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDYGETSEGYNVVQEHVKS 132

[Close]

BLAST of Lens_culinaris_v1_Contig212 vs. TAIR peptide
Match: AT2G32060.2 (| Symbols: | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein | chr2:13639228-13640104 REVERSE LENGTH=144)

HSP 1 Score: 192.586 bits (488), Expect = 2.118e-49
Identity = 89/117 (76.07%), Postives = 103/117 (88.03%), Query Frame = 3

Query:  174 MDIMTALQLVLRKSRAYGGLARGLHEGAKVIEKHAGQLCVLAEDCDQPDYVKLVKALCAEHNVSLLTVPSAKTLGEWAGLCKIDSEGKARKVTGCSCVVVKDFGEEHEAYNVVLQHV 524
            MD+ TAL+L +RKSRAYGG+ RGLHE AK+IEK   QLCVLAEDC+QPDYVKLVKALCA+H++ LLTVPSAKTLGEWAGLCKIDSEG ARKV GCSC+V+KDFGEE  A N+V +H+
Sbjct:   25 MDVSTALELTVRKSRAYGGVVRGLHESAKLIEKRNAQLCVLAEDCNQPDYVKLVKALCADHSIKLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCSCLVIKDFGEETTALNIVKKHL 141

[Close]

BLAST of Lens_culinaris_v1_Contig212 vs. TAIR peptide
Match: AT2G32060.3 (| Symbols: | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein | chr2:13639228-13640104 REVERSE LENGTH=144)

HSP 1 Score: 192.586 bits (488), Expect = 2.118e-49
Identity = 89/117 (76.07%), Postives = 103/117 (88.03%), Query Frame = 3

Query:  174 MDIMTALQLVLRKSRAYGGLARGLHEGAKVIEKHAGQLCVLAEDCDQPDYVKLVKALCAEHNVSLLTVPSAKTLGEWAGLCKIDSEGKARKVTGCSCVVVKDFGEEHEAYNVVLQHV 524
            MD+ TAL+L +RKSRAYGG+ RGLHE AK+IEK   QLCVLAEDC+QPDYVKLVKALCA+H++ LLTVPSAKTLGEWAGLCKIDSEG ARKV GCSC+V+KDFGEE  A N+V +H+
Sbjct:   25 MDVSTALELTVRKSRAYGGVVRGLHESAKLIEKRNAQLCVLAEDCNQPDYVKLVKALCADHSIKLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCSCLVIKDFGEETTALNIVKKHL 141

[Close]

BLAST of Lens_culinaris_v1_Contig212 vs. TAIR peptide
Match: AT2G32060.1 (| Symbols: | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein | chr2:13639228-13640104 REVERSE LENGTH=144)

HSP 1 Score: 192.586 bits (488), Expect = 2.118e-49
Identity = 89/117 (76.07%), Postives = 103/117 (88.03%), Query Frame = 3

Query:  174 MDIMTALQLVLRKSRAYGGLARGLHEGAKVIEKHAGQLCVLAEDCDQPDYVKLVKALCAEHNVSLLTVPSAKTLGEWAGLCKIDSEGKARKVTGCSCVVVKDFGEEHEAYNVVLQHV 524
            MD+ TAL+L +RKSRAYGG+ RGLHE AK+IEK   QLCVLAEDC+QPDYVKLVKALCA+H++ LLTVPSAKTLGEWAGLCKIDSEG ARKV GCSC+V+KDFGEE  A N+V +H+
Sbjct:   25 MDVSTALELTVRKSRAYGGVVRGLHESAKLIEKRNAQLCVLAEDCNQPDYVKLVKALCADHSIKLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCSCLVIKDFGEETTALNIVKKHL 141

[Close]

BLAST of Lens_culinaris_v1_Contig212 vs. TAIR peptide
Match: AT1G15930.1 (| Symbols: | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein | chr1:5471702-5472741 FORWARD LENGTH=144)

HSP 1 Score: 190.66 bits (483), Expect = 8.048e-49
Identity = 91/120 (75.83%), Postives = 104/120 (86.67%), Query Frame = 3

Query:  174 MDIMTALQLVLRKSRAYGGLARGLHEGAKVIEKHAGQLCVLAEDCDQPDYVKLVKALCAEHNVSLLTVPSAKTLGEWAGLCKIDSEGKARKVTGCSCVVVKDFGEEHEAYNVVLQHVKAQ 533
            MD+MTAL+L LRK+RAYGG+ RGLHE AK+IEK   QL VLAEDC+QPDYVKLVKALCA+H V LLTVPSAKTLGEWAGLCKIDSEG ARKV GCSC+VVKDFGEE  A ++V +H+ +Q
Sbjct:   25 MDLMTALELTLRKARAYGGVVRGLHECAKLIEKRVAQLVVLAEDCNQPDYVKLVKALCADHEVRLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCSCLVVKDFGEETTALSIVNKHIASQ 144

[Close]

BLAST of Lens_culinaris_v1_Contig212 vs. TAIR peptide
Match: AT1G15930.2 (| Symbols: | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein | chr1:5471702-5472741 FORWARD LENGTH=144)

HSP 1 Score: 190.66 bits (483), Expect = 8.048e-49
Identity = 91/120 (75.83%), Postives = 104/120 (86.67%), Query Frame = 3

Query:  174 MDIMTALQLVLRKSRAYGGLARGLHEGAKVIEKHAGQLCVLAEDCDQPDYVKLVKALCAEHNVSLLTVPSAKTLGEWAGLCKIDSEGKARKVTGCSCVVVKDFGEEHEAYNVVLQHVKAQ 533
            MD+MTAL+L LRK+RAYGG+ RGLHE AK+IEK   QL VLAEDC+QPDYVKLVKALCA+H V LLTVPSAKTLGEWAGLCKIDSEG ARKV GCSC+VVKDFGEE  A ++V +H+ +Q
Sbjct:   25 MDLMTALELTLRKARAYGGVVRGLHECAKLIEKRVAQLVVLAEDCNQPDYVKLVKALCADHEVRLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCSCLVVKDFGEETTALSIVNKHIASQ 144

The following BLAST results are available for this feature:

BLAST of Lens_culinaris_v1_Contig212 vs. SwissProt
BLAST of Lens_culinaris_v1_Contig212 vs. TrEMBL
BLAST of Lens_culinaris_v1_Contig212 vs. TAIR peptide

BLAST of Lens_culinaris_v1_Contig212 vs. SwissProt
Analysis Date: 2010-12-28 (Homology Analysis: Lens culinaris unigene v1 vs Swissprot)
Total hits: 10


Match Name	E-value	Identity	Description
RS12_HORVU	5.982e-51	79.17	40S ribosomal protein S12 OS=Hordeum vulgare GN=RP...	[more]
RS122_ARATH	2.128e-48	76.07	40S ribosomal protein S12-2 OS=Arabidopsis thalian...	[more]
RS121_ARATH	8.085e-48	75.83	40S ribosomal protein S12-1 OS=Arabidopsis thalian...	[more]
RS12_PIG	2.698e-35	57.50	40S ribosomal protein S12 OS=Sus scrofa GN=RPS12 P...	[more]
RS12_HUMAN	2.698e-35	57.50	40S ribosomal protein S12 OS=Homo sapiens GN=RPS12...	[more]
RS12_CYAPA	2.698e-35	57.63	40S ribosomal protein S12 OS=Cyanophora paradoxa G...	[more]
RS12_CHICK	2.698e-35	57.50	40S ribosomal protein S12 OS=Gallus gallus GN=RPS1...	[more]
RS12_BOVIN	2.698e-35	57.50	40S ribosomal protein S12 OS=Bos taurus GN=RPS12 P...	[more]
RS12_RAT	3.895e-34	56.67	40S ribosomal protein S12 OS=Rattus norvegicus GN=...	[more]
RS12_MOUSE	3.895e-34	56.67	40S ribosomal protein S12 OS=Mus musculus GN=Rps12...	[more]

BLAST of Lens_culinaris_v1_Contig212 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Lens culinaris unigene v1 vs Trembl)
Total hits: 10


Match Name	E-value	Identity	Description
C6T064_SOYBN	5.208e-61	98.32	40S ribosomal protein S12 OS=Glycine max PE=2 SV=1	[more]
C6SVV7_SOYBN	5.208e-61	98.32	40S ribosomal protein S12 OS=Glycine max PE=2 SV=1	[more]
C6SW79_SOYBN	1.979e-60	96.67	40S ribosomal protein S12 OS=Glycine max PE=2 SV=1	[more]
B9GT02_POPTR	9.512e-55	88.24	40S ribosomal protein S12 OS=Populus trichocarpa G...	[more]
A9P9K3_POPTR	9.512e-55	88.24	40S ribosomal protein S12 OS=Populus trichocarpa P...	[more]
D7U865_VITVI	8.053e-54	88.24	Whole genome shotgun sequence of line PN40024, sca...	[more]
A9PJY6_9ROSI	6.817e-53	84.87	40S ribosomal protein S12 OS=Populus trichocarpa x...	[more]
A9PDC2_POPTR	6.817e-53	84.87	40S ribosomal protein S12 OS=Populus trichocarpa G...	[more]
B9PB63_POPTR	1.519e-52	84.87	40S ribosomal protein S12 (Fragment) OS=Populus tr...	[more]
B9GVJ7_POPTR	1.519e-52	84.87	40S ribosomal protein S12 (Fragment) OS=Populus tr...	[more]

BLAST of Lens_culinaris_v1_Contig212 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Lens culinaris unigene v1 vs TAIR 10 peptide)
Total hits: 5


Match Name	E-value	Identity	Description
AT2G32060.2	2.118e-49	76.07	\| Symbols: \| Ribosomal protein L7Ae/L30e/S12e/Gad...	[more]
AT2G32060.3	2.118e-49	76.07	\| Symbols: \| Ribosomal protein L7Ae/L30e/S12e/Gad...	[more]
AT2G32060.1	2.118e-49	76.07	\| Symbols: \| Ribosomal protein L7Ae/L30e/S12e/Gad...	[more]
AT1G15930.1	8.048e-49	75.83	\| Symbols: \| Ribosomal protein L7Ae/L30e/S12e/Gad...	[more]
AT1G15930.2	8.048e-49	75.83	\| Symbols: \| Ribosomal protein L7Ae/L30e/S12e/Gad...	[more]

InterPro

Analysis Name: InterProScan analysis for Lens culinaris unigene v1
Date Performed: 2011-01-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000530	Ribosomal protein S12e	PRINTS	PR00972	RIBSOMALS12E	coord: 67..80 score: 1.1e-22coord: 81..97 score: 1.1e-22coord: 122..143 score: 1.1e-22coord: 147..160 score: 1.1
IPR000530	Ribosomal protein S12e	PANTHER	PTHR11843	40S RIBOSOMAL PROTEIN S12	coord: 31..177 score: 6.8
IPR000530	Ribosomal protein S12e	PROSITE	PS01189	RIBOSOMAL_S12E	coord: 63..81 score
IPR004038	Ribosomal protein L7Ae/L30e/S12e/Gadd45	PFAM	PF01248	Ribosomal_L7Ae	coord: 63..156 score: 5.6
None	No IPR available	GENE3D	3.30.1330.30	no description	coord: 56..176 score: 5.4
None	No IPR available	SEG	seg	seg	coord: 7..17 score: NAcoord: 36..57 score
None	No IPR available	SUPERFAMILY	55315	L30e-like	coord: 57..175 score: 1.7
None	No IPR available	SEG	seg	seg	coord: 23..46 score: NAcoord: 65..71 score

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>Lens_culinaris_v1_Contig212 ID=Lens_culinaris_v1_Contig212; Name=Lens_culinaris_v1_Contig212; organism=Lens culinaris; type=contig; length=785bp
ATTGGATAGAATTTGACTCTCACAGAACTCATCGCCGCCGCACTCGTCGT
CGGCAGTCAGAAACAGAAAGAAAGTTTTTTGTTTTCAAATCCACTAGGAA
AATGTCAGGTGAGGAAGCTGTTGTTGTAGCTGAGCCTGTTGTTGCTGCTG
CACCTGGAATTCCAGGTGAGCCAATGGACATCATGACTGCCTTGCAACTT
GTGCTCAGGAAGTCACGTGCATACGGAGGTCTTGCACGTGGACTTCACGA
AGGTGCTAAGGTGATTGAGAAGCATGCAGGACAGCTTTGTGTTCTTGCAG
AAGATTGTGACCAACCTGACTATGTTAAACTTGTCAAGGCTCTTTGCGCT
GAGCACAATGTTAGCCTGCTGACAGTTCCCAGTGCCAAGACACTTGGAGA
ATGGGCTGGTTTGTGCAAGATTGATTCCGAGGGAAAAGCTAGGAAAGTTA
CTGGCTGCTCCTGCGTGGTTGTCAAGGATTTCGGGGAGGAGCATGAAGCC
TACAATGTTGTTCTGCAGCACGTGAAAGCTCAATGAGTTGCTGGATCACA
TTGAGTGTGTGTGTTTTCCTTTTCTTTTTGTAGCTATTCCATCGGAATGA
ATTTTGCTTCTAGTTGGATTTCAACCGTTTGATAAGATTTTGCTGCTTCT
AGTTGTTATTGTTACTCTAATTAGTTACTTTTGTTCTGCTATGATATTTC
TAAGAATTTAATCATCTACTCATCTGTCACCAAGCGAATTTACTTTTTTA
TGTATTTGTGCAAGCATCATGTGCTGTTTTTTATG

Annotated Terms

The following terms have been associated with this contig:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular anatomical structure
GO:0005840	ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

Vocabulary: **INTERPRO**
Term	Definition
IPR000530	Ribosomal_S12e
IPR004038	Ribosomal_L7Ae/L30e/S12e/Gad45

Search form

Lens_culinaris_v1_Contig212