Lens_culinaris_v1_Contig258
Contig Overview
Unigenes
This contig is part of the following unigenes:
Relationships
The following EST feature(s) are a part of this contig:
Analyses
This contig is derived from or has results from the following analyses
Alignments
The following features are aligned
Homology
BLAST of Lens_culinaris_v1_Contig258 vs. TrEMBL
Match: B9I4X5_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_569412 PE=4 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 5.989e-18 Identity = 80/212 (37.74%), Postives = 103/212 (48.58%), Query Frame = 3 Query: 6 TVSMVDTQKTIQEDDESTKPVAIKSDEIVENEKAGLEEASEKLV-----TQLSLGMEQPKE------------TPCIGECA------SSLPCWSLYQGLPALSLKPCNH-QILSPVPLRPCLKVRTREEE----SSCTGSNTGSVCDMEKQSKNNSSDTDDTWSQNHPHEGVLVKKSGRGFVPYKRCLSERDDNSLIVGLEEREGQRARVCS 557 TV +VD+QK E PV S+E +N A E+ + L T+LSLGM + T G+ A SS+P W+L QG+P L L +H P+P C++ R E+E SCT SN SV D+E +N D D Q ++KS RGFVPYKRCL ERD S ++ EERE QRARV S Sbjct: 283 TVKIVDSQKESPPGAEIVLPVI--SNENHDNVDADKEKPAHTLQRKQSDTELSLGMANSNQNLWPSPASVFHCTEMQGDNANYFATNSSIPWWTLCQGVPFLYLTSNDHTSAQKPIP---CVEERFEEKEILNERSCTSSNVFSVGDLENGERN--LDVDSQCGQPSVEGTSSLQKSTRGFVPYKRCLGERDVKSTVIISEERERQRARVYS 487
BLAST of Lens_culinaris_v1_Contig258 vs. TrEMBL
Match: B9SJV2_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0605170 PE=4 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 7.576e-13 Identity = 67/213 (31.46%), Postives = 99/213 (46.48%), Query Frame = 3 Query: 3 RTVSMVDTQKTIQEDDESTKPVAIK---SDEIVENEKAGLEEASEKLVTQLSLGM---------------------EQPKETPCIGECASSLPCWSLYQGLPALSLKPCNHQILSPVPLRPCLKVRTRE----EESSCTGSNTGSVCDMEKQSKNNSSDTDDTWSQNHPHEGVLVKKSGRGFVPYKRCLSERDDNSLIVGLEEREGQRARVCS 557 RTVS+ + K ED E+ V K D + N+K ++L TQLSLG+ +Q C+ + + LP W+++Q LP L C Q P C++ R++E +E SC+G NTGS D+E ++ S++ + K GFVPYKRCL+ERD +S + E+ E QRAR+ S Sbjct: 228 RTVSVTHSPKQCLEDSENLLSVTYKISEDDPDIGNDKGVQTLTRKQLDTQLSLGIGTAANCNSLPFSTTPVHQVLEQQGDNVNCL-QSSPPLP-WAVFQDLPFSFLDSCG-QSSHGDPRNCCVEERSKEKDIHDERSCSGLNTGSASDVEHHCQSLSANGR-----------ARLHKRTNGFVPYKRCLAERDLSSSSILSEKHEQQRARLIS 426
BLAST of Lens_culinaris_v1_Contig258 vs. TrEMBL
Match: B9N379_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_784079 PE=4 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.210e-10 Identity = 60/191 (31.41%), Postives = 86/191 (45.03%), Query Frame = 3 Query: 66 VAIKSDEIVENEKAGLEEASEKLV-----TQLSLGMEQPKETPC-----IGECAS-------------SLPCWSLYQGLPALSLKPCNHQILSPVPLRPCLKVRTREEE----SSCTGSNTGSVCDMEKQSKNNSSDTDDTWSQNHPHEGVLVKKSGRGFVPYKRCLSERDDNSLIVGLEEREGQRARVCS 557 +++ S+E +N E+ ++ L+ T+LSLGME + + EC S+P W L G+ L +H +P P + R+ E+E SCTGSN G V ++E K S D D+ + +PYKRCL ERD S ++ EERE QRARVCS Sbjct: 300 LSMTSNENQDNADTDKEKPAQTLLLKQSDTELSLGMENSDQNQLPSPASVFECTELQRGTANYFATNPSIPWWFLGSGVSFLPPTSYDHTS-TPTPTPSYMAERSEEKEILNERSCTGSNAGPVGELENVEK--SLDVVDSQCRQ---------------LPYKRCLGERDVKSTVIVYEERERQRARVCS 472
BLAST of Lens_culinaris_v1_Contig258 vs. TrEMBL
Match: Q60D04_SOLDE (Myb-like DNA-binding protein, putative OS=Solanum demissum GN=SDM1_56t00019 PE=4 SV=2) HSP 1 Score: 66.6254 bits (161), Expect = 1.337e-9 Identity = 46/121 (38.02%), Postives = 60/121 (49.59%), Query Frame = 3 Query: 195 ASSLPCWSLYQGLPALSLKPCNHQILSPVPLRPCLKVRTREEESSCTGSNTGSVCDMEKQSKNNSSDTDDTWSQNHPHEGVLVKKSGRGFVPYKRCLSERDDNSLIVGLEEREGQRARVCS 557 A+++ WS YQ L S+ C + K + E S TGS+ GS +++ N SS+T E KS +GFVPYKRCL+ERD S LEERE +R RVCS Sbjct: 424 AATISWWSWYQDLIYRSISSCGQTAVGTAAHCQGPKDEEPQREGSSTGSSIGSASEVD--DGNRSSETV---------ESKCTTKS-KGFVPYKRCLAERDGKSSGAVLEERESRRVRVCS 532
BLAST of Lens_culinaris_v1_Contig258 vs. TrEMBL
Match: A5C7G8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_012100 PE=4 SV=1) HSP 1 Score: 61.6178 bits (148), Expect = 4.302e-8 Identity = 52/158 (32.91%), Postives = 75/158 (47.47%), Query Frame = 3 Query: 162 QPKETPCI-GECASSLPCWSLYQGLPALSLKPCNHQILSPVPLRPCLKV-----RTREEESSCTGSNTGSV---------CDMEKQSKNNSSDTDDTWSQNHPHEGVLVKKSG------------RGFVPYKRCLSERDDNSLIVGLEEREGQRARVC 554 Q +++ C+ + LP W+ Y G+P + P +HQ + K + ++E S TGSNTGSV D+E QS DT + S + E L ++S +GF+PYKRCL+ERD S I+ ERE QR R+C Sbjct: 389 QKEDSNCVEAGTTAPLPWWTFYGGIP-IPFLPLHHQ--DSIKAHEDTKFAETHDKEIQKEGSWTGSNTGSVNEGGNCDTNWDVETQSHQPYLDTMEKESDS-AFELKLSERSAFSRGRTNTDKCVKGFMPYKRCLAERDTQSSIIIGNEREEQRIRLC 542
BLAST of Lens_culinaris_v1_Contig258 vs. TrEMBL
Match: D7TA25_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_79.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00035231001 PE=4 SV=1) HSP 1 Score: 60.4622 bits (145), Expect = 9.583e-8 Identity = 48/145 (33.10%), Postives = 71/145 (48.97%), Query Frame = 3 Query: 162 QPKETPCI-GECASSLPCWSLYQGLPALSLKPCNHQILSPVPLRPCLKV-----RTREEESSCTGSNTGS-----VCDMEKQSKNNSS---DTDDTWSQNHPHEGVLVKKSGRGFVPYKRCLSERDDNSLIVGLEEREGQRARVC 554 Q +++ C+ + LP W+ Y G+P + P +HQ + K + ++E S TGSNTGS + MEK+S + +S+ + VK GF+PYKRCL+ERD S I+ ERE QR R+C Sbjct: 341 QKEDSNCVEAGTTAPLPWWTFYGGIP-IPFLPLHHQ--DSIKAHEDTKFAETHDKEIQKEGSWTGSNTGSSHQPYLDTMEKESDSAFELKLSERSAFSRGRTNTDKCVK----GFMPYKRCLAERDTQSSIIIGNEREEQRIRLC 478
BLAST of Lens_culinaris_v1_Contig258 vs. TrEMBL
Match: A8HJF9_SOLCI (Putative At5g37260-like protein (Fragment) OS=Solanum chilense GN=CT251 PE=4 SV=1) HSP 1 Score: 58.9214 bits (141), Expect = 2.788e-7 Identity = 46/120 (38.33%), Postives = 62/120 (51.67%), Query Frame = 3 Query: 252 PCNHQILSPVPL--RPC-----LKVRTREEESSCTGSNTGSVCDMEKQSKNNSSDTDDTWSQNHPHEGVLVK------------KSGRGFVPYKRCLSERDDNSLIVGLEEREGQRARVC 554 PC Q+ SP+P+ RP L+V+ ++E S TGSN SV D E + N + + S+N E V K +GFVPYKRCL+ER +S + EERE QR R+C Sbjct: 329 PCT-QVHSPIPMKGRPLFNDRDLEVKETQKEGSSTGSNAESV-DAELSGEKNM-EIEAQSSRNVVEESVRASVPSLFERRANSTKRVKGFVPYKRCLAERGMSSSTLTGEEREEQRTRLC 445
BLAST of Lens_culinaris_v1_Contig258 vs. TrEMBL
Match: A8HJI7_SOLCI (Putative At5g37260-like protein (Fragment) OS=Solanum chilense GN=CT251 PE=4 SV=1) HSP 1 Score: 57.3806 bits (137), Expect = 8.113e-7 Identity = 47/120 (39.17%), Postives = 59/120 (49.17%), Query Frame = 3 Query: 252 PCNHQILSPVPL--RPCLKVRTRE-----EESSCTGSNTGSVCDMEKQSKNNSSDTDDTWSQNHPHEGVLVK------------KSGRGFVPYKRCLSERDDNSLIVGLEEREGQRARVC 554 PC Q+ SP+P+ RP R E +E S TGSN SV D E N + + S+N E V K +GFVPYKRCL+ER +S I+ EERE QR R+C Sbjct: 329 PCT-QVHSPIPMKGRPLFNDRDLEGKETQKEGSSTGSNAESV-DAELSGDKNM-EIEAQSSRNVVEESVRASVPSLFERRANSTKRVKGFVPYKRCLAERGMSSSILTGEEREEQRTRLC 445
BLAST of Lens_culinaris_v1_Contig258 vs. TAIR peptide
Match: AT3G10113.1 (| Symbols: | Homeodomain-like superfamily protein | chr3:3118043-3119391 REVERSE LENGTH=336) HSP 1 Score: 52.7582 bits (125), Expect = 1.541e-7 Identity = 30/83 (36.14%), Postives = 47/83 (56.63%), Query Frame = 3 Query: 321 ESSCTGSNT-GSVCDMEKQSKNNSSDTDDTWSQ--NHPHEGVLVKKSGRGFVPYKRCLSERDDNS--LIVGLEEREGQRARVC 554 E+ CTGSN GSV + + + ++ +W + + +G + GF PYKRCLSER+ S +V +E++ QRAR+C Sbjct: 254 ETFCTGSNAFGSVTEASENLEKSAEPISSSWKRLSSLEKQGSCNPVNASGFRPYKRCLSEREVTSSLTLVASDEKKSQRARIC 336
BLAST of Lens_culinaris_v1_Contig258 vs. TAIR peptide
Match: AT1G18330.2 (| Symbols: EPR1, RVE7 | Homeodomain-like superfamily protein | chr1:6306196-6307718 REVERSE LENGTH=372) HSP 1 Score: 52.7582 bits (125), Expect = 1.541e-7 Identity = 30/83 (36.14%), Postives = 47/83 (56.63%), Query Frame = 3 Query: 321 ESSCTGSNT-GSVCDMEKQSKNNSSDTDDTWSQ--NHPHEGVLVKKSGRGFVPYKRCLSERDDNS--LIVGLEEREGQRARVC 554 E+ CTGSN GSV + + + ++ +W + + +G + GF PYKRCLSER+ S +V +E++ QRAR+C Sbjct: 290 ETFCTGSNAFGSVTEASENLEKSAEPISSSWKRLSSLEKQGSCNPVNASGFRPYKRCLSEREVTSSLTLVASDEKKSQRARIC 372
BLAST of Lens_culinaris_v1_Contig258 vs. TAIR peptide
Match: AT1G18330.1 (| Symbols: EPR1, RVE7 | Homeodomain-like superfamily protein | chr1:6306196-6307640 REVERSE LENGTH=346) HSP 1 Score: 52.7582 bits (125), Expect = 1.541e-7 Identity = 30/83 (36.14%), Postives = 47/83 (56.63%), Query Frame = 3 Query: 321 ESSCTGSNT-GSVCDMEKQSKNNSSDTDDTWSQ--NHPHEGVLVKKSGRGFVPYKRCLSERDDNS--LIVGLEEREGQRARVC 554 E+ CTGSN GSV + + + ++ +W + + +G + GF PYKRCLSER+ S +V +E++ QRAR+C Sbjct: 264 ETFCTGSNAFGSVTEASENLEKSAEPISSSWKRLSSLEKQGSCNPVNASGFRPYKRCLSEREVTSSLTLVASDEKKSQRARIC 346 The following BLAST results are available for this feature:
BLAST of Lens_culinaris_v1_Contig258 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Lens culinaris unigene v1 vs Trembl) Total hits: 8
BLAST of Lens_culinaris_v1_Contig258 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Lens culinaris unigene v1 vs TAIR 10 peptide) Total hits: 3
Sequences
The
following sequences are available for this feature:
contig sequence >Lens_culinaris_v1_Contig258 ID=Lens_culinaris_v1_Contig258; Name=Lens_culinaris_v1_Contig258; organism=Lens culinaris; type=contig; length=572bpback to top |