Lens_culinaris_v1_Contig258

Contig Overview
NameLens_culinaris_v1_Contig258
Unique NameLens_culinaris_v1_Contig258
Typecontig
OrganismLens culinaris (lentil)
Sequence length572
Unigenes
This contig is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Lens culinaris unigene v1Lens culinaris unigene v1contig
Relationships

The following EST feature(s) are a part of this contig:

Feature NameUnique NameSpeciesType
GT628121GT628121Lens culinarisEST
GT625445GT625445Lens culinarisEST


Analyses
This contig is derived from or has results from the following analyses
Analysis NameDate Performed
Lens culinaris unigene v12010-12-27
Homology Analysis: Lens culinaris unigene v1 vs Trembl2010-12-28
Homology Analysis: Lens culinaris unigene v1 vs TAIR 10 peptide2011-02-03
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
GT628121ESTGT628121:1..572 +
GT625445ESTGT625445:100..572 +
Homology
BLAST of Lens_culinaris_v1_Contig258 vs. TrEMBL
Match: B9I4X5_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_569412 PE=4 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 5.989e-18
Identity = 80/212 (37.74%), Postives = 103/212 (48.58%), Query Frame = 3
Query:    6 TVSMVDTQKTIQEDDESTKPVAIKSDEIVENEKAGLEEASEKLV-----TQLSLGMEQPKE------------TPCIGECA------SSLPCWSLYQGLPALSLKPCNH-QILSPVPLRPCLKVRTREEE----SSCTGSNTGSVCDMEKQSKNNSSDTDDTWSQNHPHEGVLVKKSGRGFVPYKRCLSERDDNSLIVGLEEREGQRARVCS 557
            TV +VD+QK      E   PV   S+E  +N  A  E+ +  L      T+LSLGM    +            T   G+ A      SS+P W+L QG+P L L   +H     P+P   C++ R  E+E     SCT SN  SV D+E   +N   D D    Q        ++KS RGFVPYKRCL ERD  S ++  EERE QRARV S
Sbjct:  283 TVKIVDSQKESPPGAEIVLPVI--SNENHDNVDADKEKPAHTLQRKQSDTELSLGMANSNQNLWPSPASVFHCTEMQGDNANYFATNSSIPWWTLCQGVPFLYLTSNDHTSAQKPIP---CVEERFEEKEILNERSCTSSNVFSVGDLENGERN--LDVDSQCGQPSVEGTSSLQKSTRGFVPYKRCLGERDVKSTVIISEERERQRARVYS 487          
BLAST of Lens_culinaris_v1_Contig258 vs. TrEMBL
Match: B9SJV2_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0605170 PE=4 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.576e-13
Identity = 67/213 (31.46%), Postives = 99/213 (46.48%), Query Frame = 3
Query:    3 RTVSMVDTQKTIQEDDESTKPVAIK---SDEIVENEKAGLEEASEKLVTQLSLGM---------------------EQPKETPCIGECASSLPCWSLYQGLPALSLKPCNHQILSPVPLRPCLKVRTRE----EESSCTGSNTGSVCDMEKQSKNNSSDTDDTWSQNHPHEGVLVKKSGRGFVPYKRCLSERDDNSLIVGLEEREGQRARVCS 557
            RTVS+  + K   ED E+   V  K    D  + N+K       ++L TQLSLG+                     +Q     C+ + +  LP W+++Q LP   L  C  Q     P   C++ R++E    +E SC+G NTGS  D+E   ++ S++               + K   GFVPYKRCL+ERD +S  +  E+ E QRAR+ S
Sbjct:  228 RTVSVTHSPKQCLEDSENLLSVTYKISEDDPDIGNDKGVQTLTRKQLDTQLSLGIGTAANCNSLPFSTTPVHQVLEQQGDNVNCL-QSSPPLP-WAVFQDLPFSFLDSCG-QSSHGDPRNCCVEERSKEKDIHDERSCSGLNTGSASDVEHHCQSLSANGR-----------ARLHKRTNGFVPYKRCLAERDLSSSSILSEKHEQQRARLIS 426          
BLAST of Lens_culinaris_v1_Contig258 vs. TrEMBL
Match: B9N379_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_784079 PE=4 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.210e-10
Identity = 60/191 (31.41%), Postives = 86/191 (45.03%), Query Frame = 3
Query:   66 VAIKSDEIVENEKAGLEEASEKLV-----TQLSLGMEQPKETPC-----IGECAS-------------SLPCWSLYQGLPALSLKPCNHQILSPVPLRPCLKVRTREEE----SSCTGSNTGSVCDMEKQSKNNSSDTDDTWSQNHPHEGVLVKKSGRGFVPYKRCLSERDDNSLIVGLEEREGQRARVCS 557
            +++ S+E  +N     E+ ++ L+     T+LSLGME   +        + EC               S+P W L  G+  L     +H   +P P    +  R+ E+E     SCTGSN G V ++E   K  S D  D+  +                +PYKRCL ERD  S ++  EERE QRARVCS
Sbjct:  300 LSMTSNENQDNADTDKEKPAQTLLLKQSDTELSLGMENSDQNQLPSPASVFECTELQRGTANYFATNPSIPWWFLGSGVSFLPPTSYDHTS-TPTPTPSYMAERSEEKEILNERSCTGSNAGPVGELENVEK--SLDVVDSQCRQ---------------LPYKRCLGERDVKSTVIVYEERERQRARVCS 472          
BLAST of Lens_culinaris_v1_Contig258 vs. TrEMBL
Match: Q60D04_SOLDE (Myb-like DNA-binding protein, putative OS=Solanum demissum GN=SDM1_56t00019 PE=4 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 1.337e-9
Identity = 46/121 (38.02%), Postives = 60/121 (49.59%), Query Frame = 3
Query:  195 ASSLPCWSLYQGLPALSLKPCNHQILSPVPLRPCLKVRTREEESSCTGSNTGSVCDMEKQSKNNSSDTDDTWSQNHPHEGVLVKKSGRGFVPYKRCLSERDDNSLIVGLEEREGQRARVCS 557
            A+++  WS YQ L   S+  C    +         K    + E S TGS+ GS  +++    N SS+T          E     KS +GFVPYKRCL+ERD  S    LEERE +R RVCS
Sbjct:  424 AATISWWSWYQDLIYRSISSCGQTAVGTAAHCQGPKDEEPQREGSSTGSSIGSASEVD--DGNRSSETV---------ESKCTTKS-KGFVPYKRCLAERDGKSSGAVLEERESRRVRVCS 532          
BLAST of Lens_culinaris_v1_Contig258 vs. TrEMBL
Match: A5C7G8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_012100 PE=4 SV=1)

HSP 1 Score: 61.6178 bits (148), Expect = 4.302e-8
Identity = 52/158 (32.91%), Postives = 75/158 (47.47%), Query Frame = 3
Query:  162 QPKETPCI-GECASSLPCWSLYQGLPALSLKPCNHQILSPVPLRPCLKV-----RTREEESSCTGSNTGSV---------CDMEKQSKNNSSDTDDTWSQNHPHEGVLVKKSG------------RGFVPYKRCLSERDDNSLIVGLEEREGQRARVC 554
            Q +++ C+     + LP W+ Y G+P +   P +HQ    +      K      +  ++E S TGSNTGSV          D+E QS     DT +  S +   E  L ++S             +GF+PYKRCL+ERD  S I+   ERE QR R+C
Sbjct:  389 QKEDSNCVEAGTTAPLPWWTFYGGIP-IPFLPLHHQ--DSIKAHEDTKFAETHDKEIQKEGSWTGSNTGSVNEGGNCDTNWDVETQSHQPYLDTMEKESDS-AFELKLSERSAFSRGRTNTDKCVKGFMPYKRCLAERDTQSSIIIGNEREEQRIRLC 542          
BLAST of Lens_culinaris_v1_Contig258 vs. TrEMBL
Match: D7TA25_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_79.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00035231001 PE=4 SV=1)

HSP 1 Score: 60.4622 bits (145), Expect = 9.583e-8
Identity = 48/145 (33.10%), Postives = 71/145 (48.97%), Query Frame = 3
Query:  162 QPKETPCI-GECASSLPCWSLYQGLPALSLKPCNHQILSPVPLRPCLKV-----RTREEESSCTGSNTGS-----VCDMEKQSKNNSS---DTDDTWSQNHPHEGVLVKKSGRGFVPYKRCLSERDDNSLIVGLEEREGQRARVC 554
            Q +++ C+     + LP W+ Y G+P +   P +HQ    +      K      +  ++E S TGSNTGS     +  MEK+S +           +S+   +    VK    GF+PYKRCL+ERD  S I+   ERE QR R+C
Sbjct:  341 QKEDSNCVEAGTTAPLPWWTFYGGIP-IPFLPLHHQ--DSIKAHEDTKFAETHDKEIQKEGSWTGSNTGSSHQPYLDTMEKESDSAFELKLSERSAFSRGRTNTDKCVK----GFMPYKRCLAERDTQSSIIIGNEREEQRIRLC 478          
BLAST of Lens_culinaris_v1_Contig258 vs. TrEMBL
Match: A8HJF9_SOLCI (Putative At5g37260-like protein (Fragment) OS=Solanum chilense GN=CT251 PE=4 SV=1)

HSP 1 Score: 58.9214 bits (141), Expect = 2.788e-7
Identity = 46/120 (38.33%), Postives = 62/120 (51.67%), Query Frame = 3
Query:  252 PCNHQILSPVPL--RPC-----LKVRTREEESSCTGSNTGSVCDMEKQSKNNSSDTDDTWSQNHPHEGVLVK------------KSGRGFVPYKRCLSERDDNSLIVGLEEREGQRARVC 554
            PC  Q+ SP+P+  RP      L+V+  ++E S TGSN  SV D E   + N  + +   S+N   E V               K  +GFVPYKRCL+ER  +S  +  EERE QR R+C
Sbjct:  329 PCT-QVHSPIPMKGRPLFNDRDLEVKETQKEGSSTGSNAESV-DAELSGEKNM-EIEAQSSRNVVEESVRASVPSLFERRANSTKRVKGFVPYKRCLAERGMSSSTLTGEEREEQRTRLC 445          
BLAST of Lens_culinaris_v1_Contig258 vs. TrEMBL
Match: A8HJI7_SOLCI (Putative At5g37260-like protein (Fragment) OS=Solanum chilense GN=CT251 PE=4 SV=1)

HSP 1 Score: 57.3806 bits (137), Expect = 8.113e-7
Identity = 47/120 (39.17%), Postives = 59/120 (49.17%), Query Frame = 3
Query:  252 PCNHQILSPVPL--RPCLKVRTRE-----EESSCTGSNTGSVCDMEKQSKNNSSDTDDTWSQNHPHEGVLVK------------KSGRGFVPYKRCLSERDDNSLIVGLEEREGQRARVC 554
            PC  Q+ SP+P+  RP    R  E     +E S TGSN  SV D E     N  + +   S+N   E V               K  +GFVPYKRCL+ER  +S I+  EERE QR R+C
Sbjct:  329 PCT-QVHSPIPMKGRPLFNDRDLEGKETQKEGSSTGSNAESV-DAELSGDKNM-EIEAQSSRNVVEESVRASVPSLFERRANSTKRVKGFVPYKRCLAERGMSSSILTGEEREEQRTRLC 445          
BLAST of Lens_culinaris_v1_Contig258 vs. TAIR peptide
Match: AT3G10113.1 (| Symbols: | Homeodomain-like superfamily protein | chr3:3118043-3119391 REVERSE LENGTH=336)

HSP 1 Score: 52.7582 bits (125), Expect = 1.541e-7
Identity = 30/83 (36.14%), Postives = 47/83 (56.63%), Query Frame = 3
Query:  321 ESSCTGSNT-GSVCDMEKQSKNNSSDTDDTWSQ--NHPHEGVLVKKSGRGFVPYKRCLSERDDNS--LIVGLEEREGQRARVC 554
            E+ CTGSN  GSV +  +  + ++     +W +  +   +G     +  GF PYKRCLSER+  S   +V  +E++ QRAR+C
Sbjct:  254 ETFCTGSNAFGSVTEASENLEKSAEPISSSWKRLSSLEKQGSCNPVNASGFRPYKRCLSEREVTSSLTLVASDEKKSQRARIC 336          
BLAST of Lens_culinaris_v1_Contig258 vs. TAIR peptide
Match: AT1G18330.2 (| Symbols: EPR1, RVE7 | Homeodomain-like superfamily protein | chr1:6306196-6307718 REVERSE LENGTH=372)

HSP 1 Score: 52.7582 bits (125), Expect = 1.541e-7
Identity = 30/83 (36.14%), Postives = 47/83 (56.63%), Query Frame = 3
Query:  321 ESSCTGSNT-GSVCDMEKQSKNNSSDTDDTWSQ--NHPHEGVLVKKSGRGFVPYKRCLSERDDNS--LIVGLEEREGQRARVC 554
            E+ CTGSN  GSV +  +  + ++     +W +  +   +G     +  GF PYKRCLSER+  S   +V  +E++ QRAR+C
Sbjct:  290 ETFCTGSNAFGSVTEASENLEKSAEPISSSWKRLSSLEKQGSCNPVNASGFRPYKRCLSEREVTSSLTLVASDEKKSQRARIC 372          
BLAST of Lens_culinaris_v1_Contig258 vs. TAIR peptide
Match: AT1G18330.1 (| Symbols: EPR1, RVE7 | Homeodomain-like superfamily protein | chr1:6306196-6307640 REVERSE LENGTH=346)

HSP 1 Score: 52.7582 bits (125), Expect = 1.541e-7
Identity = 30/83 (36.14%), Postives = 47/83 (56.63%), Query Frame = 3
Query:  321 ESSCTGSNT-GSVCDMEKQSKNNSSDTDDTWSQ--NHPHEGVLVKKSGRGFVPYKRCLSERDDNS--LIVGLEEREGQRARVC 554
            E+ CTGSN  GSV +  +  + ++     +W +  +   +G     +  GF PYKRCLSER+  S   +V  +E++ QRAR+C
Sbjct:  264 ETFCTGSNAFGSVTEASENLEKSAEPISSSWKRLSSLEKQGSCNPVNASGFRPYKRCLSEREVTSSLTLVASDEKKSQRARIC 346          
The following BLAST results are available for this feature:
BLAST of Lens_culinaris_v1_Contig258 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Lens culinaris unigene v1 vs Trembl)
Total hits: 8
Match NameE-valueIdentityDescription
B9I4X5_POPTR5.989e-1837.74Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]
B9SJV2_RICCO7.576e-1331.46Putative uncharacterized protein OS=Ricinus commun... [more]
B9N379_POPTR1.210e-1031.41Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]
Q60D04_SOLDE1.337e-938.02Myb-like DNA-binding protein, putative OS=Solanum ... [more]
A5C7G8_VITVI4.302e-832.91Putative uncharacterized protein OS=Vitis vinifera... [more]
D7TA25_VITVI9.583e-833.10Whole genome shotgun sequence of line PN40024, sca... [more]
A8HJF9_SOLCI2.788e-738.33Putative At5g37260-like protein (Fragment) OS=Sola... [more]
A8HJI7_SOLCI8.113e-739.17Putative At5g37260-like protein (Fragment) OS=Sola... [more]
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BLAST of Lens_culinaris_v1_Contig258 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Lens culinaris unigene v1 vs TAIR 10 peptide)
Total hits: 3
Match NameE-valueIdentityDescription
AT3G10113.11.541e-736.14| Symbols: | Homeodomain-like superfamily protein... [more]
AT1G18330.21.541e-736.14| Symbols: EPR1, RVE7 | Homeodomain-like superfami... [more]
AT1G18330.11.541e-736.14| Symbols: EPR1, RVE7 | Homeodomain-like superfami... [more]
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Sequences
The following sequences are available for this feature:

contig sequence

>Lens_culinaris_v1_Contig258 ID=Lens_culinaris_v1_Contig258; Name=Lens_culinaris_v1_Contig258; organism=Lens culinaris; type=contig; length=572bp
GCAGAACAGTCTCTATGGTTGATACTCAGAAGACAATTCAGGAGGATGAT
GAAAGTACTAAGCCAGTAGCCATCAAATCTGATGAAATTGTTGAGAATGA
GAAAGCTGGCTTAGAAGAGGCATCAGAGAAACTTGTTACACAACTATCAC
TAGGCATGGAACAACCGAAGGAGACTCCGTGTATCGGTGAATGCGCATCA
TCTTTACCATGTTGGAGTTTATACCAAGGCCTTCCAGCTTTGAGCCTCAA
GCCATGCAATCATCAGATTTTAAGTCCTGTGCCTCTGAGGCCTTGTTTGA
AGGTAAGAACTCGAGAGGAGGAAAGTTCTTGCACCGGTTCTAATACCGGA
TCAGTTTGTGATATGGAAAAACAAAGCAAGAACAATTCATCAGATACCGA
CGATACTTGGAGTCAAAATCATCCTCATGAAGGAGTTTTAGTTAAAAAAT
CTGGAAGAGGGTTTGTACCATATAAAAGATGTTTATCTGAAAGAGACGAT
AATTCTTTAATTGTTGGGTTGGAAGAAAGAGAAGGGCAAAGAGCTCGTGT
GTGTTCATAGCTTTTTATTCCA
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