Lens_culinaris_v1_Contig85

Contig Overview


Name	Lens_culinaris_v1_Contig85
Unique Name	Lens_culinaris_v1_Contig85
Type	contig
Organism	Lens culinaris (lentil)
Sequence length	671

Unigenes

This contig is part of the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
Lens culinaris unigene v1	Lens culinaris unigene v1	contig

Relationships

The following EST feature(s) are a part of this contig:


Feature Name	Unique Name	Species	Type
GT625830	GT625830	Lens culinaris	EST
GT625731	GT625731	Lens culinaris	EST
GT626961	GT626961	Lens culinaris	EST

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Lens culinaris unigene v1	2010-12-27
Homology Analysis: Lens culinaris unigene v1 vs Swissprot	2010-12-28
Homology Analysis: Lens culinaris unigene v1 vs Trembl	2010-12-28
KEGG analysis for Lens culinaris unigene v1	2011-01-05
Homology Analysis: Lens culinaris unigene v1 vs TAIR 10 peptide	2011-02-03
InterProScan analysis for Lens culinaris unigene v1	2011-01-06

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
GT625830	EST	GT625830:1..663 +
GT625731	EST	GT625731:1..658 +
GT626961	EST	GT626961:184..671 +

Homology

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BLAST of Lens_culinaris_v1_Contig85 vs. SwissProt
Match: RL281_ARATH (60S ribosomal protein L28-1 OS=Arabidopsis thaliana GN=RPL28A PE=1 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 6.791e-47
Identity = 94/143 (65.73%), Postives = 110/143 (76.92%), Query Frame = 1

Query:   55 MATVPGPLVWEIVKRNNSFLVKEFGNNTQSVQFSREPXXXXXXXXXXXXGLANKKTVTIQPAGKDQSVLLATTKPRKQNKPSALLHKSVMKKEFRRMAKAVQNQVADNYYRPDLKKAALARLSVVNRSLKVAKSGAKKRNRHA 483
            MATVPG L+WEIVK NN FLVK+FG     VQFS+E             GLANKKTVTIQ A KDQ+V+LATTK +KQNKP   ++KS++KKEF RM+KAV NQV DNYYRPDLKKAALARLS +++ L+VAKSGAK+RNR A
Sbjct:    1 MATVPGQLIWEIVKNNNCFLVKQFGRGNSKVQFSKETNNLTNVHSYKHSGLANKKTVTIQAADKDQAVVLATTKTKKQNKPKLSVNKSILKKEFPRMSKAVANQVVDNYYRPDLKKAALARLSAISKGLRVAKSGAKQRNRQA 143

[Close]

BLAST of Lens_culinaris_v1_Contig85 vs. SwissProt
Match: RL282_ARATH (60S ribosomal protein L28-2 OS=Arabidopsis thaliana GN=RPL28C PE=2 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 1.976e-46
Identity = 92/143 (64.34%), Postives = 108/143 (75.52%), Query Frame = 1

Query:   55 MATVPGPLVWEIVKRNNSFLVKEFGNNTQSVQFSREPXXXXXXXXXXXXGLANKKTVTIQPAGKDQSVLLATTKPRKQNKPSALLHKSVMKKEFRRMAKAVQNQVADNYYRPDLKKAALARLSVVNRSLKVAKSGAKKRNRHA 483
            MATVPG L+WEIVKRNN FLVK+FG     VQFS+E             GLANKKTVTIQ AGKDQ V+L TTK ++QNKP   ++KS++KKEF RM+K V NQV DNYYRPDLKKAALARLS +++ L+VAKSG K+RNR A
Sbjct:    1 MATVPGQLIWEIVKRNNCFLVKQFGRGNAKVQFSKESNNLVNINSYKHSGLANKKTVTIQAAGKDQGVVLGTTKTKRQNKPKLSVNKSILKKEFSRMSKVVANQVVDNYYRPDLKKAALARLSAISKGLRVAKSGPKRRNRQA 143

[Close]

BLAST of Lens_culinaris_v1_Contig85 vs. SwissProt
Match: RL28E_SCHPO (Probable 60S ribosomal protein L28e OS=Schizosaccharomyces pombe GN=rpl28e PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.867e-12
Identity = 45/137 (32.85%), Postives = 68/137 (49.64%), Query Frame = 1

Query:   61 TVPGPLVWEIVKRNNSFLVK--EFGNNTQSVQFSREPXXXXXXXXXXXXGLANKKTVTIQPAGKDQSVLLATTKPRKQNKPSALLHKSVM-KKEFRRMAKAVQNQVADNYYRPDLKKAALARLSVVNRSLKVAKSGA 462
            +V   L+W++++ NN FLVK  EFG     +QF+REP            GL N K V +Q       VL+  T P+   KP+ L  K V+     R+  K++  ++    YR DL K ++AR S +  S +  K+ A
Sbjct:    2 SVSNDLIWQVIRDNNRFLVKRPEFGG----IQFNREPVNVSGKNAQRFSGLCNDKAVGVQANSPRGVVLITKTNPKNAQKPAKLFRKDVIANASSRKTYKSIAGRIGRTGYRDDLVKVSVARASAILSSQRPKKTVA 134

[Close]

BLAST of Lens_culinaris_v1_Contig85 vs. SwissProt
Match: RL28_MOUSE (60S ribosomal protein L28 OS=Mus musculus GN=Rpl28 PE=1 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 1.338e-10
Identity = 38/123 (30.89%), Postives = 64/123 (52.03%), Query Frame = 1

Query:   76 LVWEIVKRNNSFLVKEFGNNTQSVQFSREPXXXXXXXXXXXXGLANKKTVTIQPAGKDQSVLLATTKPRKQNKPSALLHKSVMKKEFRRMAKAVQNQVADNYYRPDLKKAALARLSVVNRSLK 444
            L W +V+  +SFL+K    N Q+  +S EP            GL ++KTV ++PA   + V++   +   Q KP+    ++ + K  R    ++++ +  N YRPDL+ AA+ R S + RS K
Sbjct:    5 LQWMVVRNCSSFLIKR---NKQT--YSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGKGVVVVMKRRSGQRKPATSYVRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAILRSQK 122

[Close]

BLAST of Lens_culinaris_v1_Contig85 vs. SwissProt
Match: RL28_HUMAN (60S ribosomal protein L28 OS=Homo sapiens GN=RPL28 PE=1 SV=3)

HSP 1 Score: 66.6254 bits (161), Expect = 1.338e-10
Identity = 38/123 (30.89%), Postives = 64/123 (52.03%), Query Frame = 1

Query:   76 LVWEIVKRNNSFLVKEFGNNTQSVQFSREPXXXXXXXXXXXXGLANKKTVTIQPAGKDQSVLLATTKPRKQNKPSALLHKSVMKKEFRRMAKAVQNQVADNYYRPDLKKAALARLSVVNRSLK 444
            L W +V+  +SFL+K    N Q+  +S EP            GL ++KTV ++PA   + V++   +   Q KP+    ++ + K  R    ++++ +  N YRPDL+ AA+ R S + RS K
Sbjct:    5 LQWMVVRNCSSFLIKR---NKQT--YSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGKGVVVVIKRRSGQRKPATSYVRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAILRSQK 122

[Close]

BLAST of Lens_culinaris_v1_Contig85 vs. SwissProt
Match: RL28_BOVIN (60S ribosomal protein L28 OS=Bos taurus GN=RPL28 PE=2 SV=3)

HSP 1 Score: 66.6254 bits (161), Expect = 1.338e-10
Identity = 38/123 (30.89%), Postives = 64/123 (52.03%), Query Frame = 1

Query:   76 LVWEIVKRNNSFLVKEFGNNTQSVQFSREPXXXXXXXXXXXXGLANKKTVTIQPAGKDQSVLLATTKPRKQNKPSALLHKSVMKKEFRRMAKAVQNQVADNYYRPDLKKAALARLSVVNRSLK 444
            L W +V+  +SFL+K    N Q+  +S EP            GL ++KTV ++PA   + V++   +   Q KP+    ++ + K  R    ++++ +  N YRPDL+ AA+ R S + RS K
Sbjct:    5 LQWMVVRNCSSFLIKR---NKQT--YSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGKGVVVVMKRRSGQRKPATSYVRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAILRSQK 122

[Close]

BLAST of Lens_culinaris_v1_Contig85 vs. SwissProt
Match: RL28_RAT (60S ribosomal protein L28 OS=Rattus norvegicus GN=Rpl28 PE=1 SV=4)

HSP 1 Score: 60.077 bits (144), Expect = 1.252e-8
Identity = 36/123 (29.27%), Postives = 62/123 (50.41%), Query Frame = 1

Query:   76 LVWEIVKRNNSFLVKEFGNNTQSVQFSREPXXXXXXXXXXXXGLANKKTVTIQPAGKDQSVLLATTKPRKQNKPSALLHKSVMKKEFRRMAKAVQNQVADNYYRPDLKKAALARLSVVNRSLK 444
            L W +V+  +SFL+K    N Q+  +S EP            GL ++KTV ++     + V++   +   Q KP+    ++ + K  R    ++++ +  N YRPDL+ AA+ R S + RS K
Sbjct:    5 LQWMVVRNCSSFLIKR---NKQT--YSTEPNNLKARNSFRYNGLIHRKTVGVEAWPDGKGVVVVMKRRSGQRKPATSYVRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAILRSQK 122

[Close]

BLAST of Lens_culinaris_v1_Contig85 vs. SwissProt
Match: RL28_DROME (60S ribosomal protein L28 OS=Drosophila melanogaster GN=RpL28 PE=1 SV=1)

HSP 1 Score: 58.9214 bits (141), Expect = 2.789e-8
Identity = 41/131 (31.30%), Postives = 60/131 (45.80%), Query Frame = 1

Query:   76 LVWEIVKRNNSFLVKEFGNNTQSVQFSREPXXXXXXXXXXXXGLANKKTVTIQPAGKDQSVLLATTKPRKQNKPSALLHKSVMKKEFRRMAKAVQNQVADNYYRPDLKKAALARLSVVNRSLKVAKSGAKK 468
            L W I++ NN+FL+K+         FS EP            G+ +KKT+ + PA   +       K +   +P+    +   K   RR  K ++N +  + YR DL +AAL R S V RS K A    KK
Sbjct:    7 LNWLIIRNNNAFLLKK---RDVKKPFSTEPNNLASVSSYRYSGIVHKKTLGVVPAADKKGFTAVLKKGKYAQRPAKNTVRVDFKAGPRRSLKKLKNLLIGSKYRKDLTQAALRRASAVLRSQKPAPVKGKK 134

[Close]

BLAST of Lens_culinaris_v1_Contig85 vs. SwissProt
Match: RL28_SPOFR (60S ribosomal protein L28 OS=Spodoptera frugiperda GN=RpL28 PE=2 SV=1)

HSP 1 Score: 57.3806 bits (137), Expect = 8.116e-8
Identity = 40/131 (30.53%), Postives = 57/131 (43.51%), Query Frame = 1

Query:   76 LVWEIVKRNNSFLVKEFGNNTQSVQFSREPXXXXXXXXXXXXGLANKKTVTIQPAGKDQSVLLATTKPRKQNKPSALLHKSVMKKEFRRMAKAVQNQVADNYYRPDLKKAALARLSVVNRSLKVAKSGAKK 468
            L W I++ NN+FLVK+         FS+EP            GL  KK V +      +   +   K +  NKP+    +   K   RR    V+  +  N+YR DL KA L R S + RS +  K+   K
Sbjct:    5 LNWMIIRNNNAFLVKK---RNIKKPFSKEPNNVTNLNSYRYNGLIQKKAVGVVENPDRKGFTVVYKKAKATNKPAKNAVRRQFKAGARRSLYKVKRLLKANHYRTDLSKATLRRASAILRSQRPIKAKKPK 132

[Close]

BLAST of Lens_culinaris_v1_Contig85 vs. TrEMBL
Match: C6T0W1_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 2.288e-58
Identity = 116/143 (81.12%), Postives = 123/143 (86.01%), Query Frame = 1

Query:   55 MATVPGPLVWEIVKRNNSFLVKEFGNNTQSVQFSREPXXXXXXXXXXXXGLANKKTVTIQPAGKDQSVLLATTKPRKQNKPSALLHKSVMKKEFRRMAKAVQNQVADNYYRPDLKKAALARLSVVNRSLKVAKSGAKKRNRHA 483
            MATVPG L+WE+VK+NNSFLVKEFG  TQSVQFSREP            GLANKKTVT+QP GKDQSVLLATTK +KQNKP+ALLHKSVMKKEFRRMAKAVQNQVADNYYRPDLKKAALARLS VNRSL+VAKSG KKRNR A
Sbjct:    1 MATVPGQLIWEVVKKNNSFLVKEFGRGTQSVQFSREPNNLYNLNTFKYSGLANKKTVTVQPTGKDQSVLLATTKTKKQNKPAALLHKSVMKKEFRRMAKAVQNQVADNYYRPDLKKAALARLSAVNRSLRVAKSGVKKRNRQA 143

[Close]

BLAST of Lens_culinaris_v1_Contig85 vs. TrEMBL
Match: C6SY73_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 219.55 bits (558), Expect = 1.813e-55
Identity = 112/143 (78.32%), Postives = 122/143 (85.31%), Query Frame = 1

Query:   55 MATVPGPLVWEIVKRNNSFLVKEFGNNTQSVQFSREPXXXXXXXXXXXXGLANKKTVTIQPAGKDQSVLLATTKPRKQNKPSALLHKSVMKKEFRRMAKAVQNQVADNYYRPDLKKAALARLSVVNRSLKVAKSGAKKRNRHA 483
            MATVPG LVWEIVK+NNSFLVK+FG  TQSV+FSRE             GLANKKTVT+QP GKDQ+VLLATTK +KQNKP+ALLHKSVMKKEFRRMAKAV+NQVA+NYYRPDLKKAALARLS V+RSLKVAKSG KKRNR A
Sbjct:    1 MATVPGQLVWEIVKKNNSFLVKQFGRGTQSVEFSRESNNLYNLNSFKYSGLANKKTVTVQPEGKDQAVLLATTKTKKQNKPAALLHKSVMKKEFRRMAKAVENQVAENYYRPDLKKAALARLSAVHRSLKVAKSGVKKRNRQA 143

[Close]

BLAST of Lens_culinaris_v1_Contig85 vs. TrEMBL
Match: B9MST4_GOSHI (Putative ribosomal protein L28 OS=Gossypium hirsutum GN=rpl28 PE=2 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 2.618e-54
Identity = 110/143 (76.92%), Postives = 118/143 (82.52%), Query Frame = 1

Query:   55 MATVPGPLVWEIVKRNNSFLVKEFGNNTQSVQFSREPXXXXXXXXXXXXGLANKKTVTIQPAGKDQSVLLATTKPRKQNKPSALLHKSVMKKEFRRMAKAVQNQVADNYYRPDLKKAALARLSVVNRSLKVAKSGAKKRNRHA 483
            MATVPG L+WE+VKRNN FLVK+FG  T  V+FS+EP            GLANKKTVTIQPAGKDQSVLLATTK +KQNKPS+LLHKSVMKKEF RMAKAV+NQV DNYYRPDL KAALARLS VNRSLKVAKSG KKRNR A
Sbjct:    1 MATVPGQLIWEVVKRNNCFLVKQFGRGTAGVRFSKEPNNLYNVNSYKHSGLANKKTVTIQPAGKDQSVLLATTKSKKQNKPSSLLHKSVMKKEFPRMAKAVKNQVTDNYYRPDLTKAALARLSAVNRSLKVAKSGVKKRNRQA 143

[Close]

BLAST of Lens_culinaris_v1_Contig85 vs. TrEMBL
Match: C6SY71_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 7.616e-54
Identity = 110/141 (78.01%), Postives = 119/141 (84.40%), Query Frame = 1

Query:   55 MATVPGPLVWEIVKRNNSFLVKEFGNNTQSVQFSREPXXXXXXXXXXXXGLANKKTVTIQPAGKDQSVLLATTKPRKQNKPSALLHKSVMKKEFRRMAKAVQNQVADNYYRPDLKKAALARLSVVNRSLKVAKSGAKKRNR 477
            MATVPG LVWEIVK+NNSFLVK+FG  TQSV+FSRE             GLANKKTVT+QP GKDQ+VLLATTK +KQNKP+ALLHKSVMKKEFR MAKAV+NQVA NYYRPDLKKAALARLS V+RSLKVAKSG KKRNR
Sbjct:    1 MATVPGQLVWEIVKKNNSFLVKQFGRGTQSVEFSRESNNLYNLNSFKYSGLANKKTVTVQPEGKDQAVLLATTKTKKQNKPAALLHKSVMKKEFRGMAKAVENQVAKNYYRPDLKKAALARLSAVHRSLKVAKSGVKKRNR 141

[Close]

BLAST of Lens_culinaris_v1_Contig85 vs. TrEMBL
Match: Q3HRY8_SOLTU (Putative uncharacterized protein OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 2.894e-53
Identity = 110/143 (76.92%), Postives = 118/143 (82.52%), Query Frame = 1

Query:   55 MATVPGPLVWEIVKRNNSFLVKEFGNNTQSVQFSREPXXXXXXXXXXXXGLANKKTVTIQPAGKDQSVLLATTKPRKQNKPSALLHKSVMKKEFRRMAKAVQNQVADNYYRPDLKKAALARLSVVNRSLKVAKSGAKKRNRHA 483
            M TVPG LVWEIVK+NNSFLVKEFGN +  V FS+EP            GLANKKTVTIQP GKD+SVLLAT+K +KQN PS+LL+KSVMKKEFRRMAKAV NQV DNYYRPDLKKAALARLSVVNRSLKV KSGAKKRNR A
Sbjct:    1 MTTVPGQLVWEIVKKNNSFLVKEFGNGSAGVVFSKEPNNLCNLHSYKHSGLANKKTVTIQPEGKDKSVLLATSKTKKQNMPSSLLNKSVMKKEFRRMAKAVTNQVGDNYYRPDLKKAALARLSVVNRSLKVTKSGAKKRNRQA 143

[Close]

BLAST of Lens_culinaris_v1_Contig85 vs. TrEMBL
Match: B9RQ66_RICCO (60S ribosomal protein L28, putative OS=Ricinus communis GN=RCOM_1485620 PE=4 SV=1)

HSP 1 Score: 209.92 bits (533), Expect = 1.436e-52
Identity = 109/143 (76.22%), Postives = 120/143 (83.92%), Query Frame = 1

Query:   55 MATVPGPLVWEIVKRNNSFLVKEFGNNTQSVQFSREPXXXXXXXXXXXXGLANKKTVTIQPAGKDQSVLLATTKPRKQNKPSALLHKSVMKKEFRRMAKAVQNQVADNYYRPDLKKAALARLSVVNRSLKVAKSGAKKRNRHA 483
            MATVPG L+WE VK+NN FLVK+FG  + SVQFS+EP            GL+NKKTV+IQ AGKDQSV+LATTK +KQN+PSALLHKSVMKKEFRRMAKAVQNQV DNYYRPDLKKAALARLSVV+RSLKVAKSG KKRNR A
Sbjct:    1 MATVPGQLIWEAVKKNNCFLVKQFGRGSASVQFSKEPNNLYNLNSYKHSGLSNKKTVSIQ-AGKDQSVILATTKTKKQNRPSALLHKSVMKKEFRRMAKAVQNQVGDNYYRPDLKKAALARLSVVHRSLKVAKSGVKKRNRQA 142

[Close]

BLAST of Lens_culinaris_v1_Contig85 vs. TrEMBL
Match: A9P9G9_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_815266 PE=2 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 3.200e-52
Identity = 107/143 (74.83%), Postives = 120/143 (83.92%), Query Frame = 1

Query:   55 MATVPGPLVWEIVKRNNSFLVKEFGNNTQSVQFSREPXXXXXXXXXXXXGLANKKTVTIQPAGKDQSVLLATTKPRKQNKPSALLHKSVMKKEFRRMAKAVQNQVADNYYRPDLKKAALARLSVVNRSLKVAKSGAKKRNRHA 483
            MATVPG L+WEIVK+NNSFLVK+FG  T S+QFS+E             GLANKKTVTIQPA KDQ+V+LATTK +KQNKP+ALLHKSVMKKEF RMAKAV+NQVADN YRPDLK+AALARLSVV+RSLKV+KSG KKRNR A
Sbjct:    1 MATVPGQLIWEIVKKNNSFLVKQFGRGTASLQFSKENNNLYNLNSYKHSGLANKKTVTIQPADKDQAVVLATTKTKKQNKPAALLHKSVMKKEFSRMAKAVENQVADNNYRPDLKRAALARLSVVHRSLKVSKSGVKKRNRQA 143

[Close]

BLAST of Lens_culinaris_v1_Contig85 vs. TrEMBL
Match: B3TLS3_ELAGV (60S ribosomal protein L28 OS=Elaeis guineensis var. tenera PE=2 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 2.074e-51
Identity = 105/143 (73.43%), Postives = 116/143 (81.12%), Query Frame = 1

Query:   55 MATVPGPLVWEIVKRNNSFLVKEFGNNTQSVQFSREPXXXXXXXXXXXXGLANKKTVTIQPAGKDQSVLLATTKPRKQNKPSALLHKSVMKKEFRRMAKAVQNQVADNYYRPDLKKAALARLSVVNRSLKVAKSGAKKRNRHA 483
            MATVPGPLVWEIVKRNN+FLVK+FGN   +VQFS+E             GLANKKTV+IQP GKD SV+LATTK +KQNKP+ L HKS MKKEFR+MAKAV NQV +NYYRPDL KAALARLS V+RSLKVAKSGAKKRNR A
Sbjct:    1 MATVPGPLVWEIVKRNNAFLVKQFGNGNATVQFSKESNNLYNVNSYKHSGLANKKTVSIQPGGKDLSVVLATTKTKKQNKPANLYHKSAMKKEFRKMAKAVMNQVTENYYRPDLTKAALARLSAVHRSLKVAKSGAKKRNRQA 143

[Close]

BLAST of Lens_culinaris_v1_Contig85 vs. TrEMBL
Match: B9RKC5_RICCO (60S ribosomal protein L28, putative OS=Ricinus communis GN=RCOM_1048210 PE=4 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 2.709e-51
Identity = 106/143 (74.13%), Postives = 114/143 (79.72%), Query Frame = 1

Query:   55 MATVPGPLVWEIVKRNNSFLVKEFGNNTQSVQFSREPXXXXXXXXXXXXGLANKKTVTIQPAGKDQSVLLATTKPRKQNKPSALLHKSVMKKEFRRMAKAVQNQVADNYYRPDLKKAALARLSVVNRSLKVAKSGAKKRNRHA 483
            MATVPG L+WEIVK NNSFLVKEFG    SVQFS+E             GLANKKTV+IQP GKD SV+LATTK +KQNKP++ LHKSVM+KEFRRMAKAV NQV DNYYRPDLKKAALARLS V RSLKVAKSG KKRNR A
Sbjct:    1 MATVPGQLIWEIVKTNNSFLVKEFGRGNASVQFSKESNNLYNLNSYKHSGLANKKTVSIQPGGKDLSVVLATTKTKKQNKPASSLHKSVMRKEFRRMAKAVSNQVGDNYYRPDLKKAALARLSAVQRSLKVAKSGVKKRNRQA 143

[Close]

BLAST of Lens_culinaris_v1_Contig85 vs. TrEMBL
Match: B3TLK6_ELAGV (Ribosomal L28-like protein OS=Elaeis guineensis var. tenera PE=2 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 1.029e-50
Identity = 103/143 (72.03%), Postives = 115/143 (80.42%), Query Frame = 1

Query:   55 MATVPGPLVWEIVKRNNSFLVKEFGNNTQSVQFSREPXXXXXXXXXXXXGLANKKTVTIQPAGKDQSVLLATTKPRKQNKPSALLHKSVMKKEFRRMAKAVQNQVADNYYRPDLKKAALARLSVVNRSLKVAKSGAKKRNRHA 483
            MATVPGPL+WEIVKRNN+FLVK+FGN    VQFS+EP            GLANKKTV IQP GKD SV+LAT+K +KQNKP  L ++SVMKKEFR+MAKAV+NQV DNYYRPDL KAALARLS V+RSLKVAKSG KKRNR A
Sbjct:    1 MATVPGPLIWEIVKRNNAFLVKQFGNGNAMVQFSKEPNNLYNVNSYKHSGLANKKTVAIQPGGKDLSVVLATSKTKKQNKPGNLYNRSVMKKEFRKMAKAVKNQVTDNYYRPDLTKAALARLSAVHRSLKVAKSGVKKRNRQA 143

[Close]

BLAST of Lens_culinaris_v1_Contig85 vs. TAIR peptide
Match: AT2G19730.3 (| Symbols: | Ribosomal L28e protein family | chr2:8511752-8512995 FORWARD LENGTH=143)

HSP 1 Score: 187.193 bits (474), Expect = 6.900e-48
Identity = 94/143 (65.73%), Postives = 110/143 (76.92%), Query Frame = 1

Query:   55 MATVPGPLVWEIVKRNNSFLVKEFGNNTQSVQFSREPXXXXXXXXXXXXGLANKKTVTIQPAGKDQSVLLATTKPRKQNKPSALLHKSVMKKEFRRMAKAVQNQVADNYYRPDLKKAALARLSVVNRSLKVAKSGAKKRNRHA 483
            MATVPG L+WEIVK NN FLVK+FG     VQFS+E             GLANKKTVTIQ A KDQ+V+LATTK +KQNKP   ++KS++KKEF RM+KAV NQV DNYYRPDLKKAALARLS +++ L+VAKSGAK+RNR A
Sbjct:    1 MATVPGQLIWEIVKNNNCFLVKQFGRGNSKVQFSKETNNLTNVHSYKHSGLANKKTVTIQAADKDQAVVLATTKTKKQNKPKLSVNKSILKKEFPRMSKAVANQVVDNYYRPDLKKAALARLSAISKGLRVAKSGAKQRNRQA 143

[Close]

BLAST of Lens_culinaris_v1_Contig85 vs. TAIR peptide
Match: AT2G19730.2 (| Symbols: | Ribosomal L28e protein family | chr2:8511752-8512995 FORWARD LENGTH=143)

HSP 1 Score: 187.193 bits (474), Expect = 6.900e-48
Identity = 94/143 (65.73%), Postives = 110/143 (76.92%), Query Frame = 1

Query:   55 MATVPGPLVWEIVKRNNSFLVKEFGNNTQSVQFSREPXXXXXXXXXXXXGLANKKTVTIQPAGKDQSVLLATTKPRKQNKPSALLHKSVMKKEFRRMAKAVQNQVADNYYRPDLKKAALARLSVVNRSLKVAKSGAKKRNRHA 483
            MATVPG L+WEIVK NN FLVK+FG     VQFS+E             GLANKKTVTIQ A KDQ+V+LATTK +KQNKP   ++KS++KKEF RM+KAV NQV DNYYRPDLKKAALARLS +++ L+VAKSGAK+RNR A
Sbjct:    1 MATVPGQLIWEIVKNNNCFLVKQFGRGNSKVQFSKETNNLTNVHSYKHSGLANKKTVTIQAADKDQAVVLATTKTKKQNKPKLSVNKSILKKEFPRMSKAVANQVVDNYYRPDLKKAALARLSAISKGLRVAKSGAKQRNRQA 143

[Close]

BLAST of Lens_culinaris_v1_Contig85 vs. TAIR peptide
Match: AT2G19730.1 (| Symbols: | Ribosomal L28e protein family | chr2:8511752-8512995 FORWARD LENGTH=143)

HSP 1 Score: 187.193 bits (474), Expect = 6.900e-48
Identity = 94/143 (65.73%), Postives = 110/143 (76.92%), Query Frame = 1

Query:   55 MATVPGPLVWEIVKRNNSFLVKEFGNNTQSVQFSREPXXXXXXXXXXXXGLANKKTVTIQPAGKDQSVLLATTKPRKQNKPSALLHKSVMKKEFRRMAKAVQNQVADNYYRPDLKKAALARLSVVNRSLKVAKSGAKKRNRHA 483
            MATVPG L+WEIVK NN FLVK+FG     VQFS+E             GLANKKTVTIQ A KDQ+V+LATTK +KQNKP   ++KS++KKEF RM+KAV NQV DNYYRPDLKKAALARLS +++ L+VAKSGAK+RNR A
Sbjct:    1 MATVPGQLIWEIVKNNNCFLVKQFGRGNSKVQFSKETNNLTNVHSYKHSGLANKKTVTIQAADKDQAVVLATTKTKKQNKPKLSVNKSILKKEFPRMSKAVANQVVDNYYRPDLKKAALARLSAISKGLRVAKSGAKQRNRQA 143

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BLAST of Lens_culinaris_v1_Contig85 vs. TAIR peptide
Match: AT4G29410.2 (| Symbols: | Ribosomal L28e protein family | chr4:14468439-14469964 REVERSE LENGTH=143)

HSP 1 Score: 185.652 bits (470), Expect = 2.008e-47
Identity = 92/143 (64.34%), Postives = 108/143 (75.52%), Query Frame = 1

Query:   55 MATVPGPLVWEIVKRNNSFLVKEFGNNTQSVQFSREPXXXXXXXXXXXXGLANKKTVTIQPAGKDQSVLLATTKPRKQNKPSALLHKSVMKKEFRRMAKAVQNQVADNYYRPDLKKAALARLSVVNRSLKVAKSGAKKRNRHA 483
            MATVPG L+WEIVKRNN FLVK+FG     VQFS+E             GLANKKTVTIQ AGKDQ V+L TTK ++QNKP   ++KS++KKEF RM+K V NQV DNYYRPDLKKAALARLS +++ L+VAKSG K+RNR A
Sbjct:    1 MATVPGQLIWEIVKRNNCFLVKQFGRGNAKVQFSKESNNLVNINSYKHSGLANKKTVTIQAAGKDQGVVLGTTKTKRQNKPKLSVNKSILKKEFSRMSKVVANQVVDNYYRPDLKKAALARLSAISKGLRVAKSGPKRRNRQA 143

[Close]

BLAST of Lens_culinaris_v1_Contig85 vs. TAIR peptide
Match: AT4G29410.1 (| Symbols: | Ribosomal L28e protein family | chr4:14468439-14469964 REVERSE LENGTH=143)

HSP 1 Score: 185.652 bits (470), Expect = 2.008e-47
Identity = 92/143 (64.34%), Postives = 108/143 (75.52%), Query Frame = 1

Query:   55 MATVPGPLVWEIVKRNNSFLVKEFGNNTQSVQFSREPXXXXXXXXXXXXGLANKKTVTIQPAGKDQSVLLATTKPRKQNKPSALLHKSVMKKEFRRMAKAVQNQVADNYYRPDLKKAALARLSVVNRSLKVAKSGAKKRNRHA 483
            MATVPG L+WEIVKRNN FLVK+FG     VQFS+E             GLANKKTVTIQ AGKDQ V+L TTK ++QNKP   ++KS++KKEF RM+K V NQV DNYYRPDLKKAALARLS +++ L+VAKSG K+RNR A
Sbjct:    1 MATVPGQLIWEIVKRNNCFLVKQFGRGNAKVQFSKESNNLVNINSYKHSGLANKKTVTIQAAGKDQGVVLGTTKTKRQNKPKLSVNKSILKKEFSRMSKVVANQVVDNYYRPDLKKAALARLSAISKGLRVAKSGPKRRNRQA 143

The following BLAST results are available for this feature:

BLAST of Lens_culinaris_v1_Contig85 vs. SwissProt
BLAST of Lens_culinaris_v1_Contig85 vs. TrEMBL
BLAST of Lens_culinaris_v1_Contig85 vs. TAIR peptide

BLAST of Lens_culinaris_v1_Contig85 vs. SwissProt
Analysis Date: 2010-12-28 (Homology Analysis: Lens culinaris unigene v1 vs Swissprot)
Total hits: 9


Match Name	E-value	Identity	Description
RL281_ARATH	6.791e-47	65.73	60S ribosomal protein L28-1 OS=Arabidopsis thalian...	[more]
RL282_ARATH	1.976e-46	64.34	60S ribosomal protein L28-2 OS=Arabidopsis thalian...	[more]
RL28E_SCHPO	1.867e-12	32.85	Probable 60S ribosomal protein L28e OS=Schizosacch...	[more]
RL28_MOUSE	1.338e-10	30.89	60S ribosomal protein L28 OS=Mus musculus GN=Rpl28...	[more]
RL28_HUMAN	1.338e-10	30.89	60S ribosomal protein L28 OS=Homo sapiens GN=RPL28...	[more]
RL28_BOVIN	1.338e-10	30.89	60S ribosomal protein L28 OS=Bos taurus GN=RPL28 P...	[more]
RL28_RAT	1.252e-8	29.27	60S ribosomal protein L28 OS=Rattus norvegicus GN=...	[more]
RL28_DROME	2.789e-8	31.30	60S ribosomal protein L28 OS=Drosophila melanogast...	[more]
RL28_SPOFR	8.116e-8	30.53	60S ribosomal protein L28 OS=Spodoptera frugiperda...	[more]

BLAST of Lens_culinaris_v1_Contig85 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Lens culinaris unigene v1 vs Trembl)
Total hits: 10


Match Name	E-value	Identity	Description
C6T0W1_SOYBN	2.288e-58	81.12	Putative uncharacterized protein OS=Glycine max PE...	[more]
C6SY73_SOYBN	1.813e-55	78.32	Putative uncharacterized protein OS=Glycine max PE...	[more]
B9MST4_GOSHI	2.618e-54	76.92	Putative ribosomal protein L28 OS=Gossypium hirsut...	[more]
C6SY71_SOYBN	7.616e-54	78.01	Putative uncharacterized protein OS=Glycine max PE...	[more]
Q3HRY8_SOLTU	2.894e-53	76.92	Putative uncharacterized protein OS=Solanum tubero...	[more]
B9RQ66_RICCO	1.436e-52	76.22	60S ribosomal protein L28, putative OS=Ricinus com...	[more]
A9P9G9_POPTR	3.200e-52	74.83	Predicted protein OS=Populus trichocarpa GN=POPTRD...	[more]
B3TLS3_ELAGV	2.074e-51	73.43	60S ribosomal protein L28 OS=Elaeis guineensis var...	[more]
B9RKC5_RICCO	2.709e-51	74.13	60S ribosomal protein L28, putative OS=Ricinus com...	[more]
B3TLK6_ELAGV	1.029e-50	72.03	Ribosomal L28-like protein OS=Elaeis guineensis va...	[more]

BLAST of Lens_culinaris_v1_Contig85 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Lens culinaris unigene v1 vs TAIR 10 peptide)
Total hits: 5


Match Name	E-value	Identity	Description
AT2G19730.3	6.900e-48	65.73	\| Symbols: \| Ribosomal L28e protein family \| chr2...	[more]
AT2G19730.2	6.900e-48	65.73	\| Symbols: \| Ribosomal L28e protein family \| chr2...	[more]
AT2G19730.1	6.900e-48	65.73	\| Symbols: \| Ribosomal L28e protein family \| chr2...	[more]
AT4G29410.2	2.008e-47	64.34	\| Symbols: \| Ribosomal L28e protein family \| chr4...	[more]
AT4G29410.1	2.008e-47	64.34	\| Symbols: \| Ribosomal L28e protein family \| chr4...	[more]

InterPro

Analysis Name: InterProScan analysis for Lens culinaris unigene v1
Date Performed: 2011-01-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002672	Ribosomal protein L28e	PANTHER	PTHR10544	60S RIBOSOMAL PROTEIN L28	coord: 20..159 score: 3.4
IPR002672	Ribosomal protein L28e	PFAM	PF01778	Ribosomal_L28e	coord: 25..153 score: 7.6
None	No IPR available	SEG	seg	seg	coord: 56..67 score
None	No IPR available	SEG	seg	seg	coord: 23..35 score
None	No IPR available	SEG	seg	seg	coord: 111..121 score

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>Lens_culinaris_v1_Contig85 ID=Lens_culinaris_v1_Contig85; Name=Lens_culinaris_v1_Contig85; organism=Lens culinaris; type=contig; length=671bp
CTTCTCAATTCCAAATCTCATTTCTCTCAACAACCGGTTTGCACGAAGAA
GAAGATGGCAACAGTACCTGGACCTCTTGTATGGGAGATTGTGAAGAGGA
ACAACTCTTTCTTGGTTAAGGAGTTCGGTAACAACACACAGAGTGTTCAG
TTTAGCAGAGAGCCAAACAATCTCTACAACCTCAACTCCTACAAGTACTC
TGGTTTGGCAAACAAGAAAACTGTTACTATTCAGCCAGCTGGCAAAGATC
AGTCTGTGTTGTTGGCCACCACTAAGCCAAGGAAGCAGAACAAGCCTTCT
GCTTTGCTTCACAAATCTGTGATGAAGAAGGAGTTCAGGAGGATGGCAAA
GGCTGTCCAAAACCAGGTGGCAGATAACTACTACAGACCTGATCTCAAGA
AGGCTGCTCTTGCAAGGTTGAGTGTTGTTAACAGAAGCCTCAAAGTTGCA
AAGTCTGGAGCAAAGAAGAGGAACAGACATGCTTGATTGAATTAGAGTGA
GAAGAGAGTTTAATTGCATGTTATATTTTCATGAATTGTGTCCACCTTTT
TGTAGTTTTTCTATTCTAGAACTTGTCTGGGATTTTTGGATTTGTCTGGT
ACATTATTTTTATTGTCTTTTTAAATATAAGACCAATACCATGTTATTAT
AATGTCTAATTTTTATCTGGG

Annotated Terms

The following terms have been associated with this contig:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular anatomical structure
GO:0005840	ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

Vocabulary: **INTERPRO**
Term	Definition
IPR002672	Ribosomal_L28e

Search form

Lens_culinaris_v1_Contig85