Lens_culinaris_v1_Contig870

Contig Overview


Name	Lens_culinaris_v1_Contig870
Unique Name	Lens_culinaris_v1_Contig870
Type	contig
Organism	Lens culinaris (lentil)
Sequence length	479

Unigenes

This contig is part of the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
Lens culinaris unigene v1	Lens culinaris unigene v1	contig

Relationships

The following EST feature(s) are a part of this contig:


Feature Name	Unique Name	Species	Type
GT621384	GT621384	Lens culinaris	EST
GT622864	GT622864	Lens culinaris	EST

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Lens culinaris unigene v1	2010-12-27
Homology Analysis: Lens culinaris unigene v1 vs Swissprot	2010-12-28
Homology Analysis: Lens culinaris unigene v1 vs Trembl	2010-12-28
Homology Analysis: Lens culinaris unigene v1 vs TAIR 10 peptide	2011-02-03
InterProScan analysis for Lens culinaris unigene v1	2011-01-06

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
GT621384	EST	GT621384:1..479 +
GT622864	EST	GT622864:142..478 +

Homology

[Close]

BLAST of Lens_culinaris_v1_Contig870 vs. SwissProt
Match: PH1_ARATH (Pleckstrin homology domain-containing protein 1 OS=Arabidopsis thaliana GN=PH1 PE=2 SV=2)

HSP 1 Score: 141.739 bits (356), Expect = 1.549e-33
Identity = 70/98 (71.43%), Postives = 80/98 (81.63%), Query Frame = 1

Query:    1 RRRWFVLKQGKLFWFKDQSSAATRSSVPRGVISVSTCLTVKGAEDVLHKASAFELSTPESTMFFIADNDKDKEDWINSIGRAIVLGSRSHAASEVNDY 294
            RRRWFVLK+GKL WFKDQ++A  R S PRGVISV  CLTVKGAEDV++K  AFELS+   TMFFIADN+K+KE+WINSIGR+IV  SRS   SEV DY
Sbjct:   44 RRRWFVLKRGKLLWFKDQAAAGIRGSTPRGVISVGDCLTVKGAEDVVNKPFAFELSSGSYTMFFIADNEKEKEEWINSIGRSIVQHSRSVTDSEVLDY 141

[Close]

BLAST of Lens_culinaris_v1_Contig870 vs. TrEMBL
Match: D7LLC4_ARALY (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_481886 PE=4 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 4.410e-33
Identity = 71/98 (72.45%), Postives = 81/98 (82.65%), Query Frame = 1

Query:    1 RRRWFVLKQGKLFWFKDQSSAATRSSVPRGVISVSTCLTVKGAEDVLHKASAFELSTPESTMFFIADNDKDKEDWINSIGRAIVLGSRSHAASEVNDY 294
            RRRWFVLK+GKL WFKDQ++A TR S PRGVISV  CLTVKGAEDV++K  AFELS+   TMFFIADN+K+KE+WINSIGR+IV  SRS   SEV DY
Sbjct:   44 RRRWFVLKRGKLLWFKDQAAAGTRGSTPRGVISVGDCLTVKGAEDVVNKPFAFELSSGSYTMFFIADNEKEKEEWINSIGRSIVQHSRSVTDSEVLDY 141

[Close]

BLAST of Lens_culinaris_v1_Contig870 vs. TrEMBL
Match: B6T5A7_MAIZE (Pleckstrin homology domain-containing protein 1 OS=Zea mays PE=2 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 4.410e-33
Identity = 72/98 (73.47%), Postives = 83/98 (84.69%), Query Frame = 1

Query:    1 RRRWFVLKQGKLFWFKDQSSAATRSSVPRGVISVSTCLTVKGAEDVLHKASAFELSTPESTMFFIADNDKDKEDWINSIGRAIVLGSRSHAASEVNDY 294
            RRRWFVLKQG+LFWFKD   A TR+SVPRGVI V+TCLTVKGAEDVL++  AFELSTP  TM+FIAD++KDKE+WINSIGR+IV  SRS   +EV DY
Sbjct:   51 RRRWFVLKQGRLFWFKDP--AVTRASVPRGVIPVATCLTVKGAEDVLNRQFAFELSTPAETMYFIADSEKDKEEWINSIGRSIVQHSRSVTDAEVVDY 146

[Close]

BLAST of Lens_culinaris_v1_Contig870 vs. TrEMBL
Match: C6T5R3_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 5.760e-33
Identity = 71/98 (72.45%), Postives = 83/98 (84.69%), Query Frame = 1

Query:    1 RRRWFVLKQGKLFWFKDQSSAATRSSVPRGVISVSTCLTVKGAEDVLHKASAFELSTPESTMFFIADNDKDKEDWINSIGRAIVLGSRSHAASEVNDY 294
            RRRWFVLKQGKLFWFKD  SA TR+S PRGV+ V+TCLTVKGAED+L+K +AFELST   TM+FIAD++K+KEDWINSIGR+IV  SRS   SE+ DY
Sbjct:   44 RRRWFVLKQGKLFWFKD--SAVTRASRPRGVVPVATCLTVKGAEDILNKPNAFELSTRSDTMYFIADSEKEKEDWINSIGRSIVQHSRSVTDSEIIDY 139

[Close]

BLAST of Lens_culinaris_v1_Contig870 vs. TrEMBL
Match: Q688J3_ORYSJ (Os05g0447000 protein OS=Oryza sativa subsp. japonica GN=OSJNBb0012G21.4 PE=4 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 1.676e-32
Identity = 70/98 (71.43%), Postives = 83/98 (84.69%), Query Frame = 1

Query:    1 RRRWFVLKQGKLFWFKDQSSAATRSSVPRGVISVSTCLTVKGAEDVLHKASAFELSTPESTMFFIADNDKDKEDWINSIGRAIVLGSRSHAASEVNDY 294
            RRRWFVLKQG+LFWFKD  +A TR SVPRGVI V+TCLTVKGAEDV+++  AFELSTP  TM+FIAD++K+KE+WINSIGR+IV  SRS   +EV DY
Sbjct:   55 RRRWFVLKQGRLFWFKD--AAVTRGSVPRGVIPVATCLTVKGAEDVINRQFAFELSTPTDTMYFIADSEKEKEEWINSIGRSIVQHSRSVTDAEVVDY 150

[Close]

BLAST of Lens_culinaris_v1_Contig870 vs. TrEMBL
Match: B8AYR7_ORYSI (Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_20149 PE=4 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 1.676e-32
Identity = 70/98 (71.43%), Postives = 83/98 (84.69%), Query Frame = 1

Query:    1 RRRWFVLKQGKLFWFKDQSSAATRSSVPRGVISVSTCLTVKGAEDVLHKASAFELSTPESTMFFIADNDKDKEDWINSIGRAIVLGSRSHAASEVNDY 294
            RRRWFVLKQG+LFWFKD  +A TR SVPRGVI V+TCLTVKGAEDV+++  AFELSTP  TM+FIAD++K+KE+WINSIGR+IV  SRS   +EV DY
Sbjct:   55 RRRWFVLKQGRLFWFKD--AAVTRGSVPRGVIPVATCLTVKGAEDVINRQFAFELSTPTDTMYFIADSEKEKEEWINSIGRSIVQHSRSVTDAEVVDY 150

[Close]

BLAST of Lens_culinaris_v1_Contig870 vs. TrEMBL
Match: Q94DF0_ORYSJ (Pleckstrin homology (PH) domain-containing protein-like OS=Oryza sativa subsp. japonica GN=P0683F02.4-1 PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 2.859e-32
Identity = 70/98 (71.43%), Postives = 82/98 (83.67%), Query Frame = 1

Query:    1 RRRWFVLKQGKLFWFKDQSSAATRSSVPRGVISVSTCLTVKGAEDVLHKASAFELSTPESTMFFIADNDKDKEDWINSIGRAIVLGSRSHAASEVNDY 294
            RRRWFVLKQG+LFWFKD  S  TR+SVPRGVI V+TCLTVKGAED L++  AFELSTP  TM+FIAD++K+KE+WINSIGR+IV  SRS   +EV DY
Sbjct:   48 RRRWFVLKQGRLFWFKD--SGVTRASVPRGVIPVATCLTVKGAEDTLNRQFAFELSTPAETMYFIADSEKEKEEWINSIGRSIVQHSRSVTDAEVVDY 143

[Close]

BLAST of Lens_culinaris_v1_Contig870 vs. TrEMBL
Match: B9HHM5_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_765552 PE=4 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 8.317e-32
Identity = 70/98 (71.43%), Postives = 79/98 (80.61%), Query Frame = 1

Query:    1 RRRWFVLKQGKLFWFKDQSSAATRSSVPRGVISVSTCLTVKGAEDVLHKASAFELSTPESTMFFIADNDKDKEDWINSIGRAIVLGSRSHAASEVNDY 294
            RRRWF+LKQGKLFWFKD  S  TR   PRGVI V++CLTVKGAEDVLHK  AFELST   TM+FIAD++K+KEDWINSIGR+IV  SRS   SE+ DY
Sbjct:   45 RRRWFILKQGKLFWFKD--STVTRVCKPRGVIPVASCLTVKGAEDVLHKQYAFELSTRNDTMYFIADSEKEKEDWINSIGRSIVQHSRSVTDSEIVDY 140

[Close]

BLAST of Lens_culinaris_v1_Contig870 vs. TrEMBL
Match: B6UCM9_MAIZE (Pleckstrin homology domain-containing protein 1 OS=Zea mays PE=2 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 8.317e-32
Identity = 69/98 (70.41%), Postives = 82/98 (83.67%), Query Frame = 1

Query:    1 RRRWFVLKQGKLFWFKDQSSAATRSSVPRGVISVSTCLTVKGAEDVLHKASAFELSTPESTMFFIADNDKDKEDWINSIGRAIVLGSRSHAASEVNDY 294
            RRRWFVLKQG+LFWFK+  S  TR+SVPRGVI V++CLTVKGAEDVL++  AFELSTP  TM+FIAD +K+KE+WINSIGR+IV  SRS   +EV DY
Sbjct:   50 RRRWFVLKQGRLFWFKE--STVTRASVPRGVIPVASCLTVKGAEDVLNRPYAFELSTPRETMYFIADTEKEKEEWINSIGRSIVQHSRSVTDAEVVDY 145

[Close]

BLAST of Lens_culinaris_v1_Contig870 vs. TrEMBL
Match: C5YYU2_SORBI (Putative uncharacterized protein Sb09g021960 OS=Sorghum bicolor GN=Sb09g021960 PE=4 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.086e-31
Identity = 69/98 (70.41%), Postives = 82/98 (83.67%), Query Frame = 1

Query:    1 RRRWFVLKQGKLFWFKDQSSAATRSSVPRGVISVSTCLTVKGAEDVLHKASAFELSTPESTMFFIADNDKDKEDWINSIGRAIVLGSRSHAASEVNDY 294
            RRRWFVLKQG+LFWFKD     TR+SVPRGVI V++CLTVKGAEDVL++  AFELSTP  TM+FIAD++K+KE+WINSIGR+IV  SRS   +EV DY
Sbjct:   54 RRRWFVLKQGRLFWFKDP--VVTRASVPRGVIPVASCLTVKGAEDVLNRQFAFELSTPAETMYFIADSEKEKEEWINSIGRSIVQHSRSVTDAEVVDY 149

[Close]

BLAST of Lens_culinaris_v1_Contig870 vs. TrEMBL
Match: D7LZ01_ARALY (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_487373 PE=4 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 1.419e-31
Identity = 69/98 (70.41%), Postives = 81/98 (82.65%), Query Frame = 1

Query:    1 RRRWFVLKQGKLFWFKDQSSAATRSSVPRGVISVSTCLTVKGAEDVLHKASAFELSTPESTMFFIADNDKDKEDWINSIGRAIVLGSRSHAASEVNDY 294
            RRRWFVLKQGKLFWFKD  S  TR S PRGV+ V++CLT KGAEDVL+K +AFELST + TM+FIAD++K+KEDWINSIGR+IV  SRS   SE+ DY
Sbjct:   45 RRRWFVLKQGKLFWFKD--SDVTRVSRPRGVVPVASCLTAKGAEDVLNKQNAFELSTRDETMYFIADSEKEKEDWINSIGRSIVQNSRSVTDSEIVDY 140

[Close]

BLAST of Lens_culinaris_v1_Contig870 vs. TAIR peptide
Match: AT2G29700.1 (| Symbols: ATPH1, PH1 | pleckstrin homologue 1 | chr2:12697571-12698008 FORWARD LENGTH=145)

HSP 1 Score: 141.739 bits (356), Expect = 1.796e-34
Identity = 70/98 (71.43%), Postives = 80/98 (81.63%), Query Frame = 1

Query:    1 RRRWFVLKQGKLFWFKDQSSAATRSSVPRGVISVSTCLTVKGAEDVLHKASAFELSTPESTMFFIADNDKDKEDWINSIGRAIVLGSRSHAASEVNDY 294
            RRRWFVLK+GKL WFKDQ++A  R S PRGVISV  CLTVKGAEDV++K  AFELS+   TMFFIADN+K+KE+WINSIGR+IV  SRS   SEV DY
Sbjct:   44 RRRWFVLKRGKLLWFKDQAAAGIRGSTPRGVISVGDCLTVKGAEDVVNKPFAFELSSGSYTMFFIADNEKEKEEWINSIGRSIVQHSRSVTDSEVLDY 141

[Close]

BLAST of Lens_culinaris_v1_Contig870 vs. TAIR peptide
Match: AT5G05710.1 (| Symbols: | Pleckstrin homology (PH) domain superfamily protein | chr5:1715943-1716377 FORWARD LENGTH=144)

HSP 1 Score: 137.887 bits (346), Expect = 2.594e-33
Identity = 69/98 (70.41%), Postives = 79/98 (80.61%), Query Frame = 1

Query:    1 RRRWFVLKQGKLFWFKDQSSAATRSSVPRGVISVSTCLTVKGAEDVLHKASAFELSTPESTMFFIADNDKDKEDWINSIGRAIVLGSRSHAASEVNDY 294
            RRRWFVLKQGKLFWFKD  S  TR S PRGV+ V +CLT KGAEDVL+K +AFELST   TM+FIAD++K+KEDWINSIGR+IV  SRS   SE+ DY
Sbjct:   45 RRRWFVLKQGKLFWFKD--SDVTRVSRPRGVVPVESCLTAKGAEDVLNKQNAFELSTRNETMYFIADSEKEKEDWINSIGRSIVQNSRSVTDSEIVDY 140

The following BLAST results are available for this feature:

BLAST of Lens_culinaris_v1_Contig870 vs. SwissProt
BLAST of Lens_culinaris_v1_Contig870 vs. TrEMBL
BLAST of Lens_culinaris_v1_Contig870 vs. TAIR peptide

BLAST of Lens_culinaris_v1_Contig870 vs. SwissProt
Analysis Date: 2010-12-28 (Homology Analysis: Lens culinaris unigene v1 vs Swissprot)
Total hits: 1


Match Name	E-value	Identity	Description
PH1_ARATH	1.549e-33	71.43	Pleckstrin homology domain-containing protein 1 OS...	[more]

BLAST of Lens_culinaris_v1_Contig870 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Lens culinaris unigene v1 vs Trembl)
Total hits: 10


Match Name	E-value	Identity	Description
D7LLC4_ARALY	4.410e-33	72.45	Putative uncharacterized protein OS=Arabidopsis ly...	[more]
B6T5A7_MAIZE	4.410e-33	73.47	Pleckstrin homology domain-containing protein 1 OS...	[more]
C6T5R3_SOYBN	5.760e-33	72.45	Putative uncharacterized protein OS=Glycine max PE...	[more]
Q688J3_ORYSJ	1.676e-32	71.43	Os05g0447000 protein OS=Oryza sativa subsp. japoni...	[more]
B8AYR7_ORYSI	1.676e-32	71.43	Putative uncharacterized protein OS=Oryza sativa s...	[more]
Q94DF0_ORYSJ	2.859e-32	71.43	Pleckstrin homology (PH) domain-containing protein...	[more]
B9HHM5_POPTR	8.317e-32	71.43	Predicted protein OS=Populus trichocarpa GN=POPTRD...	[more]
B6UCM9_MAIZE	8.317e-32	70.41	Pleckstrin homology domain-containing protein 1 OS...	[more]
C5YYU2_SORBI	1.086e-31	70.41	Putative uncharacterized protein Sb09g021960 OS=So...	[more]
D7LZ01_ARALY	1.419e-31	70.41	Putative uncharacterized protein OS=Arabidopsis ly...	[more]

BLAST of Lens_culinaris_v1_Contig870 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Lens culinaris unigene v1 vs TAIR 10 peptide)
Total hits: 2


Match Name	E-value	Identity	Description
AT2G29700.1	1.796e-34	71.43	\| Symbols: ATPH1, PH1 \| pleckstrin homologue 1 \| c...	[more]
AT5G05710.1	2.594e-33	70.41	\| Symbols: \| Pleckstrin homology (PH) domain supe...	[more]

InterPro

Analysis Name: InterProScan analysis for Lens culinaris unigene v1
Date Performed: 2011-01-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001849	Pleckstrin homology domain	PFAM	PF00169	PH	coord: 1..82 score: 5.4
IPR001849	Pleckstrin homology domain	SMART	SM00233	no description	coord: 1..86 score: 8.4
IPR001849	Pleckstrin homology domain	PROFILE	PS50003	PH_DOMAIN	coord: 1..84 score: 14
IPR011993	Pleckstrin homology-type	GENE3D	2.30.29.30	no description	coord: 1..83 score: 2.1
None	No IPR available	PANTHER	PTHR22903	PLEKHH PROTEIN	coord: 1..76 score: 1.8
None	No IPR available	SUPERFAMILY	50729	PH domain-like	coord: 1..83 score: 8.1
None	No IPR available	SEG	seg	seg	coord: 42..64 score: NAcoord: 69..84 score
None	No IPR available	SEG	seg	seg	coord: 20..38 score
None	No IPR available	SEG	seg	seg	coord: 19..36 score

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>Lens_culinaris_v1_Contig870 ID=Lens_culinaris_v1_Contig870; Name=Lens_culinaris_v1_Contig870; organism=Lens culinaris; type=contig; length=479bp
CGCCGTCGTTGGTTCGTTCTCAAACAAGGCAAACTCTTCTGGTTCAAAGA
CCAATCTTCCGCCGCCACACGCTCCTCCGTCCCCCGCGGCGTCATCTCCG
TATCCACCTGCCTCACTGTAAAAGGCGCGGAAGATGTTCTTCACAAAGCC
TCCGCCTTTGAACTCTCAACGCCAGAGTCCACTATGTTCTTTATTGCTGA
TAATGATAAAGACAAGGAAGATTGGATCAATTCGATTGGGCGTGCGATTG
TTCTTGGGTCGAGATCTCATGCTGCTTCTGAGGTTAATGATTATCGTCAA
TCTACTGATACTTGATCGCTTTTGGGTTTTTCTTATTCTTGTTTTTGTTC
AACTCTTTGTATTTTGTATACTATAGTTCTTTCTTTGTCTGAATTATGAT
GAACCCACTTGTAAAATTTTCATCTGTATTTTCCTTTTCGTTTTTTTCAA
TAAAAATTTTGGGTTTTTCGGTTTTTGGT

Annotated Terms

The following terms have been associated with this contig:

Vocabulary: **INTERPRO**
Term	Definition
IPR001849	PH_domain
IPR011993	PH-like_dom_sf

Search form

Lens_culinaris_v1_Contig870