Pisum_sativum_v1_Contig1939

Contig Overview
NamePisum_sativum_v1_Contig1939
Unique NamePisum_sativum_v1_Contig1939
Typecontig
OrganismPisum sativum (pea)
Sequence length479
Unigenes
This contig is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Pisum sativum unigene v1Pisum sativum unigene v1contig
Relationships

The following EST feature(s) are a part of this contig:

Feature NameUnique NameSpeciesType
FG536281FG536281Pisum sativumEST
FG535641FG535641Pisum sativumEST
FG535639FG535639Pisum sativumEST


Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
FG536281ESTFG536281:1..432 +
FG535641ESTFG535641:9..479 +
FG535639ESTFG535639:9..479 +
Homology
[Close]
BLAST of Pisum_sativum_v1_Contig1939 vs. SwissProt
Match: SF3BB_ARATH (Uncharacterized protein At4g14342 OS=Arabidopsis thaliana GN=At4g14342 PE=3 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 2.816e-43
Identity = 80/87 (91.95%), Postives = 86/87 (98.85%), Query Frame = 3 
Query:    3 MQASDRFNINSQLEHLQAKYVGTGHADMNRFEWAVNIQRDSYASYIGHYPLLSYFSIAENESIGRQRYTFMQKMLLPCGLPPEREED 263
            MQASDRFNINSQLEHLQAKYVGTGHAD++RFEWAVNIQRDSYASYIGHYP+LSYF+IAENESIGR+RY FMQKMLLPCGLPPEREE+
Sbjct:    1 MQASDRFNINSQLEHLQAKYVGTGHADLSRFEWAVNIQRDSYASYIGHYPMLSYFAIAENESIGRERYNFMQKMLLPCGLPPEREEE 87
[Close]
BLAST of Pisum_sativum_v1_Contig1939 vs. SwissProt
Match: SF3BA_ARATH (Uncharacterized protein At3g23325 OS=Arabidopsis thaliana GN=At3g23325 PE=2 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 1.825e-42
Identity = 78/87 (89.66%), Postives = 85/87 (97.70%), Query Frame = 3 
Query:    3 MQASDRFNINSQLEHLQAKYVGTGHADMNRFEWAVNIQRDSYASYIGHYPLLSYFSIAENESIGRQRYTFMQKMLLPCGLPPEREED 263
            MQASDRFNINSQLEHLQAKYVGTGHAD++RFEW VNIQRDSYASYIGHYP+LSYF+IAENESIGR+RY FMQKMLLPCGLPPERE++
Sbjct:    1 MQASDRFNINSQLEHLQAKYVGTGHADLSRFEWTVNIQRDSYASYIGHYPMLSYFAIAENESIGRERYNFMQKMLLPCGLPPEREDE 87
[Close]
BLAST of Pisum_sativum_v1_Contig1939 vs. SwissProt
Match: SF3B5_DROME (Probable splicing factor 3B subunit 5 OS=Drosophila melanogaster GN=CG11985 PE=1 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 2.166e-27
Identity = 53/83 (63.86%), Postives = 67/83 (80.72%), Query Frame = 3 
Query:   15 DRFNINSQLEHLQAKYVGTGHADMNRFEWAVNIQRDSYASYIGHYPLLSYFSIAENESIGRQRYTFMQKMLLPCGLPPEREED 263
            +R+NI+SQLEHLQ+KY+GTGHAD  +FEW  N  RDS ASY+GHY +L+YF+IAENES  R R+  M++ML PCG PPE+ ED
Sbjct:    3 ERYNIHSQLEHLQSKYIGTGHADTTKFEWLTNQHRDSLASYMGHYDILNYFAIAENESKARVRFNLMERMLQPCGPPPEKLED 85
[Close]
BLAST of Pisum_sativum_v1_Contig1939 vs. SwissProt
Match: SF3B5_HUMAN (Splicing factor 3B subunit 5 OS=Homo sapiens GN=SF3B5 PE=1 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 3.128e-26
Identity = 51/84 (60.71%), Postives = 67/84 (79.76%), Query Frame = 3 
Query:   12 SDRFNINSQLEHLQAKYVGTGHADMNRFEWAVNIQRDSYASYIGHYPLLSYFSIAENESIGRQRYTFMQKMLLPCGLPPEREED 263
            +DR+ I+SQLEHLQ+KY+GTGHAD  ++EW VN  RDSY SY+GH+ LL+YF+IAENES  R R+  M+KML PCG P ++ E+
Sbjct:    2 TDRYTIHSQLEHLQSKYIGTGHADTTKWEWLVNQHRDSYCSYMGHFDLLNYFAIAENESKARVRFNLMEKMLQPCGPPADKPEE 85
[Close]
BLAST of Pisum_sativum_v1_Contig1939 vs. SwissProt
Match: SF3B5_BOVIN (Splicing factor 3B subunit 5 OS=Bos taurus GN=SF3B5 PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 3.128e-26
Identity = 51/84 (60.71%), Postives = 67/84 (79.76%), Query Frame = 3 
Query:   12 SDRFNINSQLEHLQAKYVGTGHADMNRFEWAVNIQRDSYASYIGHYPLLSYFSIAENESIGRQRYTFMQKMLLPCGLPPEREED 263
            +DR+ I+SQLEHLQ+KY+GTGHAD  ++EW VN  RDSY SY+GH+ LL+YF+IAENES  R R+  M+KML PCG P ++ E+
Sbjct:    2 TDRYTIHSQLEHLQSKYIGTGHADTTKWEWLVNQHRDSYCSYMGHFDLLNYFAIAENESKARVRFNLMEKMLQPCGPPADKPEE 85
[Close]
BLAST of Pisum_sativum_v1_Contig1939 vs. SwissProt
Match: SF3B5_MOUSE (Splicing factor 3B subunit 5 OS=Mus musculus GN=Sf3b5 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 4.517e-25
Identity = 50/84 (59.52%), Postives = 66/84 (78.57%), Query Frame = 3 
Query:   12 SDRFNINSQLEHLQAKYVGTGHADMNRFEWAVNIQRDSYASYIGHYPLLSYFSIAENESIGRQRYTFMQKMLLPCGLPPEREED 263
            +DR+ I+SQLEHLQ+KY+GTGHAD  ++EW VN  RDSY SY+GH+ LL+YF+IAENES  R R+  M+KML P G P ++ E+
Sbjct:    2 TDRYTIHSQLEHLQSKYIGTGHADTTKWEWLVNQHRDSYCSYMGHFDLLNYFAIAENESKARVRFNLMEKMLQPSGPPADKPEE 85
[Close]
BLAST of Pisum_sativum_v1_Contig1939 vs. SwissProt
Match: SF3B5_DICDI (Splicing factor 3B subunit 5 OS=Dictyostelium discoideum GN=sf3b5 PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.230e-22
Identity = 48/84 (57.14%), Postives = 64/84 (76.19%), Query Frame = 3 
Query:   12 SDRFNINSQLEHLQAKYVGTGHADMNRFEWAVNIQRDSYASYIGHYPLLSYFSIAENESIGRQRYTFMQKMLLPCGLPPEREED 263
            S+R ++NSQLEHLQ +YVGTGHAD+++ EW  N  RDS +S+IGH   LS FSIAENES+GR RY  + KM+ PCG  P+ +++
Sbjct:    2 SERESLNSQLEHLQMRYVGTGHADISKHEWLTNQHRDSLSSFIGHSSFLSLFSIAENESVGRVRYNTLTKMISPCGPAPKIKDN 85
[Close]
BLAST of Pisum_sativum_v1_Contig1939 vs. SwissProt
Match: YHV5_SCHPO (Uncharacterized protein C211.05 OS=Schizosaccharomyces pombe GN=SPBC211.05 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.103e-14
Identity = 35/79 (44.30%), Postives = 52/79 (65.82%), Query Frame = 3 
Query:   12 SDRFNINSQLEHLQAKYVGTGHADMNRFEWAVNIQRDSYASYIGHYPLLSYFSIAENESIGRQRYTFMQKMLLPCGLPP 248
            +DR    ++LE LQA+YVG G+A   ++EW VN  RD+ +S +GH PLL+Y + A  E   + R   ++KM++PCG PP
Sbjct:    2 ADRLRSQAKLEQLQARYVGVGNAFTTKYEWMVNQHRDTLSSVVGHPPLLAYMATALGEPRVQVRKNLLEKMIMPCGPPP 80
[Close]
BLAST of Pisum_sativum_v1_Contig1939 vs. TrEMBL
Match: Q6Z8Q6_ORYSJ (Os08g0444100 protein OS=Oryza sativa subsp. japonica GN=P0708B04.23 PE=4 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 8.019e-43
Identity = 81/87 (93.10%), Postives = 86/87 (98.85%), Query Frame = 3 
Query:    3 MQASDRFNINSQLEHLQAKYVGTGHADMNRFEWAVNIQRDSYASYIGHYPLLSYFSIAENESIGRQRYTFMQKMLLPCGLPPEREED 263
            MQASDRFNINSQLEHLQAKYVGTGHAD+NRFEWAVNIQRDSYASYIGHYP+L+YFSIAENESIGR+RY FMQKMLLPCGLPPER+ED
Sbjct:    1 MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYIGHYPMLAYFSIAENESIGRERYNFMQKMLLPCGLPPERDED 87
[Close]
BLAST of Pisum_sativum_v1_Contig1939 vs. TrEMBL
Match: A9NKI0_PICSI (Putative uncharacterized protein OS=Picea sitchensis PE=4 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 8.019e-43
Identity = 80/87 (91.95%), Postives = 86/87 (98.85%), Query Frame = 3 
Query:    3 MQASDRFNINSQLEHLQAKYVGTGHADMNRFEWAVNIQRDSYASYIGHYPLLSYFSIAENESIGRQRYTFMQKMLLPCGLPPEREED 263
            MQASDRFNINSQLEHLQAKYVGTGHAD+NRFEWAVNIQRDSYASY+GHYPLL+YF++AENESIGR+RY FMQKMLLPCGLPPEREED
Sbjct:    1 MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPLLAYFAVAENESIGRERYNFMQKMLLPCGLPPEREED 87
[Close]
BLAST of Pisum_sativum_v1_Contig1939 vs. TrEMBL
Match: D7SZI2_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_49.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00027834001 PE=4 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 1.368e-42
Identity = 80/87 (91.95%), Postives = 86/87 (98.85%), Query Frame = 3 
Query:    3 MQASDRFNINSQLEHLQAKYVGTGHADMNRFEWAVNIQRDSYASYIGHYPLLSYFSIAENESIGRQRYTFMQKMLLPCGLPPEREED 263
            MQASDRFNINSQLEHLQAKYVGTGHAD+NRFEWAVNIQRDSYASY+GHYPLL+YF+IAENESIGR+RY FMQKMLLPCGLPPERE+D
Sbjct:    1 MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPLLAYFAIAENESIGRERYNFMQKMLLPCGLPPEREDD 87
[Close]
BLAST of Pisum_sativum_v1_Contig1939 vs. TrEMBL
Match: C7J5Z7_ORYSJ (Os08g0278966 protein OS=Oryza sativa subsp. japonica GN=Os08g0278966 PE=4 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 2.333e-42
Identity = 80/87 (91.95%), Postives = 86/87 (98.85%), Query Frame = 3 
Query:    3 MQASDRFNINSQLEHLQAKYVGTGHADMNRFEWAVNIQRDSYASYIGHYPLLSYFSIAENESIGRQRYTFMQKMLLPCGLPPEREED 263
            MQASDRFNINSQLEHLQAKYVGTGHAD+NRFEWA+NIQRDSYASYIGHYP+L+YF+IAENESIGR+RY FMQKMLLPCGLPPEREED
Sbjct:   31 MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWALNIQRDSYASYIGHYPVLAYFAIAENESIGRERYNFMQKMLLPCGLPPEREED 117
[Close]
BLAST of Pisum_sativum_v1_Contig1939 vs. TrEMBL
Match: C6SX24_SOYBN (Putative uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 3.047e-42
Identity = 80/87 (91.95%), Postives = 86/87 (98.85%), Query Frame = 3 
Query:    3 MQASDRFNINSQLEHLQAKYVGTGHADMNRFEWAVNIQRDSYASYIGHYPLLSYFSIAENESIGRQRYTFMQKMLLPCGLPPEREED 263
            MQASDRFNINSQLEHLQAKYVGTGHAD+N+FEWAVNIQRDSYASYIGHYPLL +F+IAENESIGR+RY+FMQKMLLPCGLPPEREED
Sbjct:    1 MQASDRFNINSQLEHLQAKYVGTGHADLNKFEWAVNIQRDSYASYIGHYPLLGFFAIAENESIGRERYSFMQKMLLPCGLPPEREED 87
[Close]
BLAST of Pisum_sativum_v1_Contig1939 vs. TrEMBL
Match: A9PBX5_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_832840 PE=4 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 3.047e-42
Identity = 79/87 (90.80%), Postives = 86/87 (98.85%), Query Frame = 3 
Query:    3 MQASDRFNINSQLEHLQAKYVGTGHADMNRFEWAVNIQRDSYASYIGHYPLLSYFSIAENESIGRQRYTFMQKMLLPCGLPPEREED 263
            MQASDRFNINSQLEHLQAKYVGTGHAD+NRFEWAVNIQRDSYASYIGHYP+L+YF++AENESIGR+RY FMQKMLLPCGLPPERE+D
Sbjct:    1 MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYIGHYPMLAYFALAENESIGRERYNFMQKMLLPCGLPPEREDD 87
[Close]
BLAST of Pisum_sativum_v1_Contig1939 vs. TrEMBL
Match: Q541W1_ARATH (Putative uncharacterized protein OS=Arabidopsis thaliana PE=4 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 3.980e-42
Identity = 80/87 (91.95%), Postives = 86/87 (98.85%), Query Frame = 3 
Query:    3 MQASDRFNINSQLEHLQAKYVGTGHADMNRFEWAVNIQRDSYASYIGHYPLLSYFSIAENESIGRQRYTFMQKMLLPCGLPPEREED 263
            MQASDRFNINSQLEHLQAKYVGTGHAD++RFEWAVNIQRDSYASYIGHYP+LSYF+IAENESIGR+RY FMQKMLLPCGLPPEREE+
Sbjct:    1 MQASDRFNINSQLEHLQAKYVGTGHADLSRFEWAVNIQRDSYASYIGHYPMLSYFAIAENESIGRERYNFMQKMLLPCGLPPEREEE 87
[Close]
BLAST of Pisum_sativum_v1_Contig1939 vs. TrEMBL
Match: B9SS71_RICCO (Splicing factor 3B subunit, putative OS=Ricinus communis GN=RCOM_1169610 PE=4 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 5.198e-42
Identity = 79/87 (90.80%), Postives = 86/87 (98.85%), Query Frame = 3 
Query:    3 MQASDRFNINSQLEHLQAKYVGTGHADMNRFEWAVNIQRDSYASYIGHYPLLSYFSIAENESIGRQRYTFMQKMLLPCGLPPEREED 263
            MQASDRFNINSQLEHLQAKYVGTGHAD+NRFEWAVNIQRDS+ASYIGHYP+L+YF+IAENESIGR+RY FMQKMLLPCGLPPERE+D
Sbjct:    1 MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSFASYIGHYPMLAYFAIAENESIGRERYNFMQKMLLPCGLPPEREDD 87
[Close]
BLAST of Pisum_sativum_v1_Contig1939 vs. TrEMBL
Match: C5XZL2_SORBI (Putative uncharacterized protein Sb04g009940 OS=Sorghum bicolor GN=Sb04g009940 PE=4 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 6.788e-42
Identity = 79/87 (90.80%), Postives = 86/87 (98.85%), Query Frame = 3 
Query:    3 MQASDRFNINSQLEHLQAKYVGTGHADMNRFEWAVNIQRDSYASYIGHYPLLSYFSIAENESIGRQRYTFMQKMLLPCGLPPEREED 263
            MQASDRFNINSQLEHLQAKYVGTGHAD++RFEWAVNIQRDSYASYIGHYP+L+YF+IAENESIGR+RY FMQKMLLPCGLPPER+ED
Sbjct:    1 MQASDRFNINSQLEHLQAKYVGTGHADLSRFEWAVNIQRDSYASYIGHYPMLAYFAIAENESIGRERYNFMQKMLLPCGLPPERDED 87
[Close]
BLAST of Pisum_sativum_v1_Contig1939 vs. TrEMBL
Match: B4FQ12_MAIZE (Putative uncharacterized protein OS=Zea mays PE=4 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 6.788e-42
Identity = 79/87 (90.80%), Postives = 86/87 (98.85%), Query Frame = 3 
Query:    3 MQASDRFNINSQLEHLQAKYVGTGHADMNRFEWAVNIQRDSYASYIGHYPLLSYFSIAENESIGRQRYTFMQKMLLPCGLPPEREED 263
            MQASDRFNINSQLEHLQAKYVGTGHAD++RFEWAVNIQRDSYASYIGHYP+L+YF+IAENESIGR+RY FMQKMLLPCGLPPER+ED
Sbjct:    1 MQASDRFNINSQLEHLQAKYVGTGHADLSRFEWAVNIQRDSYASYIGHYPMLAYFAIAENESIGRERYNFMQKMLLPCGLPPERDED 87
[Close]
BLAST of Pisum_sativum_v1_Contig1939 vs. TAIR peptide
Match: AT4G14342.1 (| Symbols: | Splicing factor 3B subunit 5/RDS3 complex subunit 10 | chr4:8253789-8255405 REVERSE LENGTH=87)

HSP 1 Score: 174.096 bits (440), Expect = 3.266e-44
Identity = 80/87 (91.95%), Postives = 86/87 (98.85%), Query Frame = 3 
Query:    3 MQASDRFNINSQLEHLQAKYVGTGHADMNRFEWAVNIQRDSYASYIGHYPLLSYFSIAENESIGRQRYTFMQKMLLPCGLPPEREED 263
            MQASDRFNINSQLEHLQAKYVGTGHAD++RFEWAVNIQRDSYASYIGHYP+LSYF+IAENESIGR+RY FMQKMLLPCGLPPEREE+
Sbjct:    1 MQASDRFNINSQLEHLQAKYVGTGHADLSRFEWAVNIQRDSYASYIGHYPMLSYFAIAENESIGRERYNFMQKMLLPCGLPPEREEE 87
[Close]
BLAST of Pisum_sativum_v1_Contig1939 vs. TAIR peptide
Match: AT3G23325.1 (| Symbols: | Splicing factor 3B subunit 5/RDS3 complex subunit 10 | chr3:8345808-8346856 FORWARD LENGTH=87)

HSP 1 Score: 171.4 bits (433), Expect = 2.117e-43
Identity = 78/87 (89.66%), Postives = 85/87 (97.70%), Query Frame = 3 
Query:    3 MQASDRFNINSQLEHLQAKYVGTGHADMNRFEWAVNIQRDSYASYIGHYPLLSYFSIAENESIGRQRYTFMQKMLLPCGLPPEREED 263
            MQASDRFNINSQLEHLQAKYVGTGHAD++RFEW VNIQRDSYASYIGHYP+LSYF+IAENESIGR+RY FMQKMLLPCGLPPERE++
Sbjct:    1 MQASDRFNINSQLEHLQAKYVGTGHADLSRFEWTVNIQRDSYASYIGHYPMLSYFAIAENESIGRERYNFMQKMLLPCGLPPEREDE 87
The following BLAST results are available for this feature:
BLAST of Pisum_sativum_v1_Contig1939 vs. SwissProt
Analysis Date: 2010-12-28 (Homology Analysis: Pisum sativum unigene v1 vs Swissprot)
Total hits: 8
Match NameE-valueIdentityDescription
SF3BB_ARATH2.816e-4391.95Uncharacterized protein At4g14342 OS=Arabidopsis t... [more]
SF3BA_ARATH1.825e-4289.66Uncharacterized protein At3g23325 OS=Arabidopsis t... [more]
SF3B5_DROME2.166e-2763.86Probable splicing factor 3B subunit 5 OS=Drosophil... [more]
SF3B5_HUMAN3.128e-2660.71Splicing factor 3B subunit 5 OS=Homo sapiens GN=SF... [more]
SF3B5_BOVIN3.128e-2660.71Splicing factor 3B subunit 5 OS=Bos taurus GN=SF3B... [more]
SF3B5_MOUSE4.517e-2559.52Splicing factor 3B subunit 5 OS=Mus musculus GN=Sf... [more]
SF3B5_DICDI1.230e-2257.14Splicing factor 3B subunit 5 OS=Dictyostelium disc... [more]
YHV5_SCHPO2.103e-1444.30Uncharacterized protein C211.05 OS=Schizosaccharom... [more]
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BLAST of Pisum_sativum_v1_Contig1939 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Pisum sativum unigene v1 vs Trembl)
Total hits: 10
Match NameE-valueIdentityDescription
Q6Z8Q6_ORYSJ8.019e-4393.10Os08g0444100 protein OS=Oryza sativa subsp. japoni... [more]
A9NKI0_PICSI8.019e-4391.95Putative uncharacterized protein OS=Picea sitchens... [more]
D7SZI2_VITVI1.368e-4291.95Whole genome shotgun sequence of line PN40024, sca... [more]
C7J5Z7_ORYSJ2.333e-4291.95Os08g0278966 protein OS=Oryza sativa subsp. japoni... [more]
C6SX24_SOYBN3.047e-4291.95Putative uncharacterized protein OS=Glycine max PE... [more]
A9PBX5_POPTR3.047e-4290.80Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]
Q541W1_ARATH3.980e-4291.95Putative uncharacterized protein OS=Arabidopsis th... [more]
B9SS71_RICCO5.198e-4290.80Splicing factor 3B subunit, putative OS=Ricinus co... [more]
C5XZL2_SORBI6.788e-4290.80Putative uncharacterized protein Sb04g009940 OS=So... [more]
B4FQ12_MAIZE6.788e-4290.80Putative uncharacterized protein OS=Zea mays PE=4 ... [more]
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BLAST of Pisum_sativum_v1_Contig1939 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Pisum sativum unigene v1 vs TAIR 10 peptide)
Total hits: 2
Match NameE-valueIdentityDescription
AT4G14342.13.266e-4491.95| Symbols: | Splicing factor 3B subunit 5/RDS3 co... [more]
AT3G23325.12.117e-4389.66| Symbols: | Splicing factor 3B subunit 5/RDS3 co... [more]
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InterPro
Analysis Name: InterProScan analysis for Pisum sativum unigene v1
Date Performed: 2010-12-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009846Splicing factor 3B subunit 5/RDS3 complex subunit 10PANTHERPTHR20978FAMILY NOT NAMEDcoord: 2..87
score: 1.8
IPR009846Splicing factor 3B subunit 5/RDS3 complex subunit 10PFAMPF07189SF3b10coord: 5..83
score: 3.1
IPR017089Splicing factor 3B, subunit 5PIRPIRSF037010Splicing factor 3B, subunit 5coord: 1..87
score: 2.6

Sequences
The following sequences are available for this feature:

contig sequence

>Pisum_sativum_v1_Contig1939 ID=Pisum_sativum_v1_Contig1939; Name=Pisum_sativum_v1_Contig1939; organism=Pisum sativum; type=contig; length=479bp
ATATGCAAGCGAGCGATAGGTTTAACATCAATTCCCAACTTGAGCATCTT
CAAGCTAAATATGTTGGAACTGGCCATGCTGATATGAACCGATTTGAATG
GGCAGTGAACATTCAGCGTGATAGTTATGCATCATATATTGGGCATTATC
CTTTACTTTCATACTTTTCTATTGCTGAAAATGAATCTATTGGTAGACAA
CGCTACACTTTTATGCAGAAAATGCTCCTCCCTTGCGGCCTGCCTCCCGA
AAGAGAAGAAGACTAGAATTATCGTTGGGATTACAAAAGGATCATCAAAG
GAGAGTTTAAAGGCTTTTGGCTGTTTGTTGTACTGTATAATCTAATTGGA
GAAACAGATATTGTGTTTGTTTAGAGATTGTTCCATCATTTTTCTTCGGT
TTGTAGTTGCTTAAGTTTCGCTGTTATTATGGTATGGAGCTCTAGTACAA
TATGTATATAATTTAAACCTTGTTTGTTT
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR009846SF3b5/RDS3-10
IPR017089Splicing_factor_3B_subunit_5