Pisum_sativum_v1_Contig2190

Contig Overview
NamePisum_sativum_v1_Contig2190
Unique NamePisum_sativum_v1_Contig2190
Typecontig
OrganismPisum sativum (pea)
Sequence length646
Unigenes
This contig is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Pisum sativum unigene v2Pisum sativum unigene v2contig
Pisum sativum unigene v1Pisum sativum unigene v1contig
Relationships

The following EST feature(s) are a part of this contig:

Feature NameUnique NameSpeciesType
GH720175GH720175Pisum sativumEST
GH720086GH720086Pisum sativumEST
CD860352CD860352Pisum sativumEST
CD860342CD860342Pisum sativumEST
GH720058GH720058Pisum sativumEST
GH720167GH720167Pisum sativumEST


Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
GH720175ESTGH720175:13..299 +
GH720086ESTGH720086:13..425 +
CD860352ESTCD860352:13..472 -
CD860342ESTCD860342:13..599 +
GH720058ESTGH720058:1..650 +
GH720167ESTGH720167:13..648 -
Homology
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BLAST of Pisum_sativum_v1_Contig2190 vs. TrEMBL
Match: Q0E7L3_PEA (Putative glycine rich protein OS=Pisum sativum GN=grp1 PE=2 SV=1)

HSP 1 Score: 60.077 bits (144), Expect = 1.685e-7
Identity = 30/40 (75.00%), Postives = 35/40 (87.50%), Query Frame = -3 
Query:  525 GLLSMFFLISSEVSAWDLAETSTNTKEEVVEKSDEINDAK 644
            GLL+M  +ISSEVSA +LAETSTN KEEV EKS+E+NDAK
Sbjct:   11 GLLAMVLVISSEVSARELAETSTNAKEEVAEKSNEVNDAK 50
[Close]
BLAST of Pisum_sativum_v1_Contig2190 vs. TrEMBL
Match: Q0E7L3_PEA (Putative glycine rich protein OS=Pisum sativum GN=grp1 PE=2 SV=1)

HSP 1 Score: 60.077 bits (144), Expect = 2.035e-7
Identity = 30/40 (75.00%), Postives = 35/40 (87.50%), Query Frame = -3 
Query:  525 GLLSMFFLISSEVSAWDLAETSTNTKEEVVEKSDEINDAK 644
            GLL+M  +ISSEVSA +LAETSTN KEEV EKS+E+NDAK
Sbjct:   11 GLLAMVLVISSEVSARELAETSTNAKEEVAEKSNEVNDAK 50
[Close]
BLAST of Pisum_sativum_v1_Contig2190 vs. Medicago proteins
Match: IMGA|Medtr5g084570.1 (Cold and drought-regulated protein CORA (AHRD V1 *-*- Q07202) chr05_pseudomolecule_IMGAG_V3.5 35482078-35480956 E EGN_Mt100125 20100825)

HSP 1 Score: 56.6102 bits (135), Expect = 1.145e-8
Identity = 28/40 (70.00%), Postives = 35/40 (87.50%), Query Frame = -3 
Query:  525 GLLSMFFLISSEVSAWDLAETSTNTKEEVVEKSDEINDAK 644
            GLL+M  LISSEVSA DL ETS++ K+EVVEK++E+NDAK
Sbjct:   11 GLLAMVLLISSEVSARDLTETSSDAKKEVVEKTNEVNDAK 50
[Close]
BLAST of Pisum_sativum_v1_Contig2190 vs. Medicago proteins
Match: IMGA|Medtr5g084540.1 (Cold and drought-regulated protein CORA (AHRD V1 *-*- Q07202) chr05_pseudomolecule_IMGAG_V3.5 35465017-35463999 E EGN_Mt100125 20100825)

HSP 1 Score: 55.4546 bits (132), Expect = 2.552e-8
Identity = 27/40 (67.50%), Postives = 35/40 (87.50%), Query Frame = -3 
Query:  525 GLLSMFFLISSEVSAWDLAETSTNTKEEVVEKSDEINDAK 644
            GLL+M  LISSEVSA DL ET+++ K+EVVEK++E+NDAK
Sbjct:   11 GLLAMVLLISSEVSARDLTETTSDAKKEVVEKTNEVNDAK 50
[Close]
BLAST of Pisum_sativum_v1_Contig2190 vs. Medicago proteins
Match: IMGA|Medtr5g084460.1 (Cold and drought-regulated protein CORA (AHRD V1 *-*- Q07202) chr05_pseudomolecule_IMGAG_V3.5 35425319-35423828 E EGN_Mt100125 20100825)

HSP 1 Score: 51.2174 bits (121), Expect = 4.812e-7
Identity = 28/40 (70.00%), Postives = 35/40 (87.50%), Query Frame = -3 
Query:  525 GLLSMFFLISSEVSAWDLAETSTNTKEEVVEKSDEINDAK 644
            GLL+M  LISS +SA DL ETST+TK+EVVEK++E+NDAK
Sbjct:   11 GLLAMA-LISSVMSARDLTETSTDTKKEVVEKTNEVNDAK 49
The following BLAST results are available for this feature:
BLAST of Pisum_sativum_v1_Contig2190 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Pisum sativum unigene v1 vs Trembl)
Total hits: 1
Match NameE-valueIdentityDescription
Q0E7L3_PEA1.685e-775.00Putative glycine rich protein OS=Pisum sativum GN=... [more]
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BLAST of Pisum_sativum_v1_Contig2190 vs. TrEMBL
Analysis Date: 2011-04-27 (Homology Analysis: Pisum sativum unigene v2 vs Trembl)
Total hits: 1
Match NameE-valueIdentityDescription
Q0E7L3_PEA2.035e-775.00Putative glycine rich protein OS=Pisum sativum GN=... [more]
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BLAST of Pisum_sativum_v1_Contig2190 vs. Medicago proteins
Analysis Date: 2011-04-21 (Homology Analysis: Pisum sativum unigene v2 vs Medicago proteins)
Total hits: 3
Match NameE-valueIdentityDescription
IMGA|Medtr5g084570.11.145e-870.00Cold and drought-regulated protein CORA (AHRD V1 *... [more]
IMGA|Medtr5g084540.12.552e-867.50Cold and drought-regulated protein CORA (AHRD V1 *... [more]
IMGA|Medtr5g084460.14.812e-770.00Cold and drought-regulated protein CORA (AHRD V1 *... [more]
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InterPro
Analysis Name: InterProScan analysis for Pisum sativum unigene v2
Date Performed: 2011-04-27
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSEGsegsegcoord: 43..111
score: NAcoord: 116..136
score
NoneNo IPR availableSEGsegsegcoord: 1..46
score: NAcoord: 49..104
score
NoneNo IPR availableSEGsegsegcoord: 4..100
score
NoneNo IPR availableSEGsegsegcoord: 6..60
score: NAcoord: 63..107
score
NoneNo IPR availableSEGsegsegcoord: 41..138
score

Analysis Name: InterProScan analysis for Pisum sativum unigene v1
Date Performed: 2010-12-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSEGsegsegcoord: 43..111
score: NAcoord: 116..136
score
NoneNo IPR availableSEGsegsegcoord: 1..46
score: NAcoord: 49..104
score
NoneNo IPR availableSEGsegsegcoord: 4..100
score
NoneNo IPR availableSEGsegsegcoord: 6..60
score: NAcoord: 63..107
score
NoneNo IPR availableSEGsegsegcoord: 41..138
score

Properties
Property NameValue
Singlet in analysisPisum sativum unigene v2
Sequences
The following sequences are available for this feature:

contig sequence

>Pisum_sativum_v1_Contig2190 ID=Pisum_sativum_v1_Contig2190; Name=Pisum_sativum_v1_Contig2190; organism=Pisum sativum; type=contig; length=646bp
GGAGACAAAATTCCAACAACTAACCCTTTATTTGATATATTACACATGAC
AGACACTGATTTATAGAGTCGTAAAATATGTATACTATAGACTCGTGAGA
TAGATAATACATAACCAGAAAGGATGTCTATCTATACCTCTTTTCTTCAA
CCCCAACATTATTTACTTCATGAAATTTATTACACTTACTACCTGCATGC
ATCATGATATAATCAGTTACGATCGTCAAAACCACCACCATTGTAACCAC
CTCCACCATGACTGTAACCTCCTCCACCACCATTGTAACCACCTCCACCA
TGACCGTAACCTCCTCCACCACCATTGTAACCACCACCATGATGACCGTA
GCCTTCTCCATAACCACCTCCACCACCATGATAACCACCGTAACCACCAT
GGTAACCACCACCACCATGGTAACCACCATAGCCATTGTGGTAACCTCCG
CCATGGTAACCACCGTAGCCATTGTGGTAACCACCATAGCCATTGTGGTA
ACCACCGTAGCCTCCACCATAATATTTGGCATCATTTATTTCATCTGACT
TTTCAACAACCTCCTCTTTGGTATTAGTGGAAGTCTCTGCTAAGTCCCAA
GCTGACACCTCTGATGAAATAAGAAAAAACATGGACAATAGGCCAA
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