Pisum_sativum_v1_Contig2714

Contig Overview
NamePisum_sativum_v1_Contig2714
Unique NamePisum_sativum_v1_Contig2714
Typecontig
OrganismPisum sativum (pea)
Sequence length405
Unigenes
This contig is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Pisum sativum unigene v1Pisum sativum unigene v1contig
Relationships

The following EST feature(s) are a part of this contig:

Feature NameUnique NameSpeciesType
AM161714AM161714Pisum sativumEST
FG531839FG531839Pisum sativumEST


Analyses
This contig is derived from or has results from the following analyses
Analysis NameDate Performed
Pisum sativum unigene v12010-12-27
Homology Analysis: Pisum sativum unigene v1 vs Trembl2010-12-28
InterProScan analysis for Pisum sativum unigene v12010-12-29
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
AM161714ESTAM161714:1..139 +
FG531839ESTFG531839:46..405 +
Homology
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BLAST of Pisum_sativum_v1_Contig2714 vs. TrEMBL
Match: A5BZB0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_010381 PE=4 SV=1)

HSP 1 Score: 61.6178 bits (148), Expect = 2.933e-8
Identity = 33/62 (53.23%), Postives = 37/62 (59.68%), Query Frame = 1 
Query:    4 EEKNKTAVSSSDDSEEQDKI------DGEGFVVVTNRRKNRQKITNGVTELYNQPSICASVR 171
            E K      SSD  + +  +      DGEGF VVT RR+NRQ  TNGV  LYNQ SICASVR
Sbjct: 1597 EGKTNLVSESSDSQQAKPDVNTSKNGDGEGFTVVTKRRRNRQHFTNGVNGLYNQQSICASVR 1658
[Close]
BLAST of Pisum_sativum_v1_Contig2714 vs. TrEMBL
Match: B9RVA6_RICCO (Eukaryotic translation initiation factor 3 subunit, putative OS=Ricinus communis GN=RCOM_0901430 PE=4 SV=1)

HSP 1 Score: 61.2326 bits (147), Expect = 3.831e-8
Identity = 35/63 (55.56%), Postives = 40/63 (63.49%), Query Frame = 1 
Query:    4 EEKNKTAVSSSD-------DSEEQDKIDGEGFVVVTNRRKNRQKITNGVTELYNQPSICASVR 171
            EEK K    S D       D  ++   D EGF+VV NRR+NRQ  +NGVTELYNQ SICASVR
Sbjct: 1393 EEKTKPVSQSGDNEQSKTTDVNKKKNGDNEGFIVVRNRRRNRQ-FSNGVTELYNQQSICASVR 1454
The following BLAST results are available for this feature:
BLAST of Pisum_sativum_v1_Contig2714 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Pisum sativum unigene v1 vs Trembl)
Total hits: 2
Match NameE-valueIdentityDescription
A5BZB0_VITVI2.933e-853.23Putative uncharacterized protein OS=Vitis vinifera... [more]
B9RVA6_RICCO3.831e-855.56Eukaryotic translation initiation factor 3 subunit... [more]
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InterPro
Analysis Name: InterProScan analysis for Pisum sativum unigene v1
Date Performed: 2010-12-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSEGsegsegcoord: 49..58
score: NAcoord: 61..75
score

Sequences
The following sequences are available for this feature:

contig sequence

>Pisum_sativum_v1_Contig2714 ID=Pisum_sativum_v1_Contig2714; Name=Pisum_sativum_v1_Contig2714; organism=Pisum sativum; type=contig; length=405bp
ACTGAAGAAAAGAATAAGACAGCGGTTAGTTCCAGTGATGACAGTGAAGA
GCAAGACAAAATAGATGGTGAAGGATTTGTAGTAGTCACAAACAGGAGAA
AAAACAGACAGAAAATCACAAATGGTGTCACAGAATTGTACAACCAACCA
TCAATCTGTGCTTCAGTTCGTTGATTAGAGTCTTGAAATGAGTCACCAAA
ATTATCCAAATTTGTTTGCTTTGTATGGCCAAAGCTCTTGACATCATTTT
GTTAATATTATATGACCTCTTTCCACTGAATTTTGGTCATTACATTCATT
TTTGTTTTATGTTTATATAATAAGGTTATTAAGGTATTTTTGCTTTCTCC
ATATAATAAGATACTTGGAAATTTTGTTGTCAATAAAAAGCTGATTGAGA
AGTTC
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