Pisum_sativum_v1_Contig2728

Contig Overview


Name	Pisum_sativum_v1_Contig2728
Unique Name	Pisum_sativum_v1_Contig2728
Type	contig
Organism	Pisum sativum (pea)
Sequence length	478

Unigenes

This contig is part of the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
Pisum sativum unigene v1	Pisum sativum unigene v1	contig

Relationships

The following EST feature(s) are a part of this contig:


Feature Name	Unique Name	Species	Type
FG532042	FG532042	Pisum sativum	EST
CD861303	CD861303	Pisum sativum	EST

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Pisum sativum unigene v1	2010-12-27
Homology Analysis: Pisum sativum unigene v1 vs Trembl	2010-12-28
Homology Analysis: Pisum sativum unigene v1 vs TAIR 10 peptide	2011-02-03
InterProScan analysis for Pisum sativum unigene v1	2010-12-29

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
FG532042	EST	FG532042:190..330 +
CD861303	EST	CD861303:1..478 +

Homology

[Close]

BLAST of Pisum_sativum_v1_Contig2728 vs. TrEMBL
Match: B9I5C7_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_661529 PE=4 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.871e-15
Identity = 38/49 (77.55%), Postives = 45/49 (91.84%), Query Frame = 3

Query:    3 LAGEDWTFDPERKEMKTRRKGHKVDRIAAEKRANTARLMEKMPDMLLDY 149
            LAGEDW +DPERKEM+T+ KGHK DRIAAE+RANTA+LME+MP+MLL Y
Sbjct:   63 LAGEDWPYDPERKEMRTKMKGHKCDRIAAERRANTAKLMEQMPEMLLAY 111

[Close]

BLAST of Pisum_sativum_v1_Contig2728 vs. TrEMBL
Match: C5YYM0_SORBI (Putative uncharacterized protein Sb09g001580 OS=Sorghum bicolor GN=Sb09g001580 PE=4 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.443e-15
Identity = 38/49 (77.55%), Postives = 43/49 (87.76%), Query Frame = 3

Query:    3 LAGEDWTFDPERKEMKTRRKGHKVDRIAAEKRANTARLMEKMPDMLLDY 149
            LAGEDWT+DP R EM+T+RKGHK DRI+AEKRANT  LM+KMP MLLDY
Sbjct:   62 LAGEDWTYDPPRGEMRTKRKGHKCDRISAEKRANTVELMKKMPQMLLDY 110

[Close]

BLAST of Pisum_sativum_v1_Contig2728 vs. TrEMBL
Match: B9FKC1_ORYSJ (Putative uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_16884 PE=4 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.443e-15
Identity = 38/49 (77.55%), Postives = 43/49 (87.76%), Query Frame = 3

Query:    3 LAGEDWTFDPERKEMKTRRKGHKVDRIAAEKRANTARLMEKMPDMLLDY 149
            LAGEDWT+DP R EM+T+RKGHK DRI+AEKRANT  LM+KMP MLLDY
Sbjct:   63 LAGEDWTYDPPRGEMRTKRKGHKCDRISAEKRANTVELMKKMPQMLLDY 111

[Close]

BLAST of Pisum_sativum_v1_Contig2728 vs. TrEMBL
Match: A2XZN7_ORYSI (Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_18196 PE=4 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.443e-15
Identity = 38/49 (77.55%), Postives = 43/49 (87.76%), Query Frame = 3

Query:    3 LAGEDWTFDPERKEMKTRRKGHKVDRIAAEKRANTARLMEKMPDMLLDY 149
            LAGEDWT+DP R EM+T+RKGHK DRI+AEKRANT  LM+KMP MLLDY
Sbjct:   63 LAGEDWTYDPPRGEMRTKRKGHKCDRISAEKRANTVELMKKMPQMLLDY 111

[Close]

BLAST of Pisum_sativum_v1_Contig2728 vs. TrEMBL
Match: B6TKW3_MAIZE (Putative uncharacterized protein OS=Zea mays PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 7.109e-15
Identity = 37/49 (75.51%), Postives = 43/49 (87.76%), Query Frame = 3

Query:    3 LAGEDWTFDPERKEMKTRRKGHKVDRIAAEKRANTARLMEKMPDMLLDY 149
            LAGEDW++DP R EM+T+RKGHK DRI+AEKRANT  LM+KMP MLLDY
Sbjct:   62 LAGEDWSYDPPRGEMRTKRKGHKCDRISAEKRANTVELMKKMPQMLLDY 110

[Close]

BLAST of Pisum_sativum_v1_Contig2728 vs. TrEMBL
Match: B6T337_MAIZE (Putative uncharacterized protein OS=Zea mays PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 7.109e-15
Identity = 37/49 (75.51%), Postives = 43/49 (87.76%), Query Frame = 3

Query:    3 LAGEDWTFDPERKEMKTRRKGHKVDRIAAEKRANTARLMEKMPDMLLDY 149
            LAGEDW++DP R EM+T+RKGHK DRI+AEKRANT  LM+KMP MLLDY
Sbjct:   62 LAGEDWSYDPPRGEMRTKRKGHKCDRISAEKRANTVELMKKMPQMLLDY 110

[Close]

BLAST of Pisum_sativum_v1_Contig2728 vs. TrEMBL
Match: A9NRG8_PICSI (Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 7.109e-15
Identity = 37/49 (75.51%), Postives = 42/49 (85.71%), Query Frame = 3

Query:    3 LAGEDWTFDPERKEMKTRRKGHKVDRIAAEKRANTARLMEKMPDMLLDY 149
            LAGEDW +DP RKEM+ + KGHK DR+AAEKRANTA LM+KMP MLLDY
Sbjct:   62 LAGEDWPYDPPRKEMRNKMKGHKCDRVAAEKRANTAELMKKMPQMLLDY 110

[Close]

BLAST of Pisum_sativum_v1_Contig2728 vs. TrEMBL
Match: B9IDQ5_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_824527 PE=4 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 9.284e-15
Identity = 37/49 (75.51%), Postives = 44/49 (89.80%), Query Frame = 3

Query:    3 LAGEDWTFDPERKEMKTRRKGHKVDRIAAEKRANTARLMEKMPDMLLDY 149
            LAGEDW +DPERKEM+T+ KGHK DRIAAE+RA TA+LME+MP+MLL Y
Sbjct:   63 LAGEDWPYDPERKEMRTKMKGHKCDRIAAERRAKTAKLMEQMPEMLLAY 111

[Close]

BLAST of Pisum_sativum_v1_Contig2728 vs. TrEMBL
Match: A5BBC3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_040451 PE=4 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 9.284e-15
Identity = 37/49 (75.51%), Postives = 43/49 (87.76%), Query Frame = 3

Query:    3 LAGEDWTFDPERKEMKTRRKGHKVDRIAAEKRANTARLMEKMPDMLLDY 149
            LAGEDW +DPERKEM+T+RKGHK DRI+AEKRA+TA LM+ MP  LLDY
Sbjct:   63 LAGEDWPYDPERKEMRTKRKGHKCDRISAEKRAHTAELMKSMPQKLLDY 111

[Close]

BLAST of Pisum_sativum_v1_Contig2728 vs. TrEMBL
Match: O65448_ARATH (At4g22000 OS=Arabidopsis thaliana GN=At4g22000/F1N20.100 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.528e-14
Identity = 36/47 (76.60%), Postives = 41/47 (87.23%), Query Frame = 3

Query:    9 GEDWTFDPERKEMKTRRKGHKVDRIAAEKRANTARLMEKMPDMLLDY 149
            GEDW +DPERK M+T+RKGHK DRI+AEKR NTA+LM KMP MLLDY
Sbjct:   65 GEDWPYDPERKAMRTKRKGHKCDRISAEKRENTAKLMLKMPQMLLDY 111

[Close]

BLAST of Pisum_sativum_v1_Contig2728 vs. TAIR peptide
Match: AT4G22000.1 (| Symbols: | unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:11659810-11660202 REVERSE LENGTH=130)

HSP 1 Score: 81.2629 bits (199), Expect = 2.838e-16
Identity = 36/47 (76.60%), Postives = 41/47 (87.23%), Query Frame = 3

Query:    9 GEDWTFDPERKEMKTRRKGHKVDRIAAEKRANTARLMEKMPDMLLDY 149
            GEDW +DPERK M+T+RKGHK DRI+AEKR NTA+LM KMP MLLDY
Sbjct:   65 GEDWPYDPERKAMRTKRKGHKCDRISAEKRENTAKLMLKMPQMLLDY 111

The following BLAST results are available for this feature:

BLAST of Pisum_sativum_v1_Contig2728 vs. TrEMBL
BLAST of Pisum_sativum_v1_Contig2728 vs. TAIR peptide

BLAST of Pisum_sativum_v1_Contig2728 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Pisum sativum unigene v1 vs Trembl)
Total hits: 10


Match Name	E-value	Identity	Description
B9I5C7_POPTR	1.871e-15	77.55	Predicted protein OS=Populus trichocarpa GN=POPTRD...	[more]
C5YYM0_SORBI	2.443e-15	77.55	Putative uncharacterized protein Sb09g001580 OS=So...	[more]
B9FKC1_ORYSJ	2.443e-15	77.55	Putative uncharacterized protein OS=Oryza sativa s...	[more]
A2XZN7_ORYSI	2.443e-15	77.55	Putative uncharacterized protein OS=Oryza sativa s...	[more]
B6TKW3_MAIZE	7.109e-15	75.51	Putative uncharacterized protein OS=Zea mays PE=2 ...	[more]
B6T337_MAIZE	7.109e-15	75.51	Putative uncharacterized protein OS=Zea mays PE=2 ...	[more]
A9NRG8_PICSI	7.109e-15	75.51	Putative uncharacterized protein OS=Picea sitchens...	[more]
B9IDQ5_POPTR	9.284e-15	75.51	Predicted protein OS=Populus trichocarpa GN=POPTRD...	[more]
A5BBC3_VITVI	9.284e-15	75.51	Putative uncharacterized protein OS=Vitis vinifera...	[more]
O65448_ARATH	3.528e-14	76.60	At4g22000 OS=Arabidopsis thaliana GN=At4g22000/F1N...	[more]

BLAST of Pisum_sativum_v1_Contig2728 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Pisum sativum unigene v1 vs TAIR 10 peptide)
Total hits: 1


Match Name	E-value	Identity	Description
AT4G22000.1	2.838e-16	76.60	\| Symbols: \| unknown protein; Has 30201 Blast hit...	[more]

InterPro

Analysis Name: InterProScan analysis for Pisum sativum unigene v1
Date Performed: 2010-12-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	SEG	seg	seg	coord: 50..65 score
None	No IPR available	SEG	seg	seg	coord: 31..46 score
None	No IPR available	SEG	seg	seg	coord: 30..45 score

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>Pisum_sativum_v1_Contig2728 ID=Pisum_sativum_v1_Contig2728; Name=Pisum_sativum_v1_Contig2728; organism=Pisum sativum; type=contig; length=478bp
TTCTTGCTGGGGAAGATTGGACTTTTGATCCTGAAAGGAAGGAGATGAAG
ACGAGGCGAAAAGGTCATAAGGTTGATAGGATAGCAGCTGAGAAGAGGGC
AAATACTGCTAGGTTGATGGAGAAGATGCCAGATATGTTGCTTGATTACA
AGAAGAAAAAGTGGCAGAAGAAGATGAAGGAAGAAGACAAAGGCAAAGTT
TGATCGGATATGCCTTTCTTTGTGCTTCATGTATTCCGTTAGTTTGAAAG
GATTTGTCACTAACTTTGTCATGATAAAATGGATTTACTCATGCAATGTT
GCACTTGTTTATTTTGGTTTTGTTATAATGAGTTTTTTGGCTTGATGGAT
GATTAATTTTTTGTTGTGTATTTCACTCTATCCATAATAACACCTTTCAA
GAGTTTGGCTTTGTGATTATCAGAGGGGGAAAAGGCATAGTCCATGAAAT
TTTCTTTTGAATGTATGTTGGAAATTGT

Search form

Pisum_sativum_v1_Contig2728