Pisum_sativum_v1_Contig383

Contig Overview


Name	Pisum_sativum_v1_Contig383
Unique Name	Pisum_sativum_v1_Contig383
Type	contig
Organism	Pisum sativum (pea)
Sequence length	733

Unigenes

This contig is part of the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
Pisum sativum unigene v1	Pisum sativum unigene v1	contig

Relationships

The following EST feature(s) are a part of this contig:


Feature Name	Unique Name	Species	Type
FG531122	FG531122	Pisum sativum	EST
FG533090	FG533090	Pisum sativum	EST
FG532327	FG532327	Pisum sativum	EST

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Pisum sativum unigene v1	2010-12-27
Homology Analysis: Pisum sativum unigene v1 vs Trembl	2010-12-28
InterProScan analysis for Pisum sativum unigene v1	2010-12-29

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
FG531122	EST	FG531122:1..445 +
FG533090	EST	FG533090:1..540 +
FG532327	EST	FG532327:284..733 +

Homology

[Close]

BLAST of Pisum_sativum_v1_Contig383 vs. TrEMBL
Match: A2Q504_MEDTR (DDT; Homeodomain-related OS=Medicago truncatula GN=MtrDRAFT_AC158497g5v2 PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 6.901e-25
Identity = 75/172 (43.60%), Postives = 90/172 (52.33%), Query Frame = 1

Query:    4 TVRKRREESRAVEDLLLSSRAAINSPNFSREPSRIMDEDWSDEKASP-------ILRXXXXXXXXXXXD-----EYDDNIQAMESDDNVEAVEYGQGNWEIGFNG-TPNRWNRDLVGMSDEEQHLEAFXXXXXXXXXXXXXXXXXXXXXXXXXXADVIMSDGSDGMANRVVN 480
            TVRKRR E RAVEDLLL   AA +S    REP R +DE+W  EK SP       +             D     E DD+  A+ESDD+ +AVEY  GNWEIG+NG +PNRW+RDLVGMSDE+                                 + +MS+GSDGM NRVVN
Sbjct: 1615 TVRKRRVEKRAVEDLLLGHAAASHSSKGGREPLRNLDEEWDLEKLSPMTPVHIGVAENSNSAEEVESDDNAQAVESDDDALAVESDDDAQAVEYDHGNWEIGYNGVSPNRWDRDLVGMSDED-----VDNFEDEDNGNDNDIGIGIEENEEEDSEEDVMSEGSDGMLNRVVN 1781

[Close]

BLAST of Pisum_sativum_v1_Contig383 vs. TrEMBL
Match: B9N3J4_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_671019 PE=4 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 7.408e-11
Identity = 57/170 (33.53%), Postives = 80/170 (47.06%), Query Frame = 1

Query:    4 TVRKRR-EESRAVEDLL------------LSSRAAINSPNFSREPSRIMDEDWSDEKASPILRXXXXXXXXXXXDEYDDNIQAMESDDNVEAVEYGQGNWEIGFNGTPNRWNRDLVGMSDEEQHLEAFXXXXXXXXXXXXXXXXXXXXXXXXXXADVIMSDGSDGMANRV 474
            TVRKRR E+ +  E LL            LS ++A+++ N+ +    I DEDWS +K                 D+  + ++  ESDDNVE V YGQGNWE GF+G  N WNR+ + +SD++ ++                              D+ MSDGSD  ANRV
Sbjct:  107 TVRKRRVEKMQPKEPLLGRITDKVASTSYLSKKSAVHN-NYVKSFGNIGDEDWSVKKGR------------MNGDDNSNIMEEAESDDNVEEV-YGQGNWEPGFSGISNGWNRNPMEVSDDDANVS----------------NGIEAMGDDDSEGDMEMSDGSDRAANRV 246

[Close]

BLAST of Pisum_sativum_v1_Contig383 vs. TrEMBL
Match: B9RB95_RICCO (Homeobox protein, putative OS=Ricinus communis GN=RCOM_1673230 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 6.271e-10
Identity = 41/112 (36.61%), Postives = 60/112 (53.57%), Query Frame = 1

Query:    4 TVRKRREESRAVEDLLLSSRAAINSP-NFSREPSRIMDEDWSDEKASPILRXXXXXXXXXXXDEYDDN--IQAMESDDNVEAVEYGQGNWEIGFNGTPNRWNRDLVGMSDEE 330
            TVRKRR E    E+ L++  +    P ++      + +EDW DEK                 D+ D++  ++A ESDDNVEA E+ QGNWE  F+   N WNR+ + MSD++
Sbjct: 1580 TVRKRRAEVMVAEETLINRLSDTVVPRSYGGSLRSLAEEDWGDEKIG------------MDVDDADNSNSVEAAESDDNVEAEEFEQGNWEQSFSRGFNGWNRNSIEMSDDD 1679

The following BLAST results are available for this feature:

BLAST of Pisum_sativum_v1_Contig383 vs. TrEMBL

BLAST of Pisum_sativum_v1_Contig383 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Pisum sativum unigene v1 vs Trembl)
Total hits: 3


Match Name	E-value	Identity	Description
A2Q504_MEDTR	6.901e-25	43.60	DDT; Homeodomain-related OS=Medicago truncatula GN...	[more]
B9N3J4_POPTR	7.408e-11	33.53	Predicted protein OS=Populus trichocarpa GN=POPTRD...	[more]
B9RB95_RICCO	6.271e-10	36.61	Homeobox protein, putative OS=Ricinus communis GN=...	[more]

InterPro

Analysis Name: InterProScan analysis for Pisum sativum unigene v1
Date Performed: 2010-12-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	SEG	seg	seg	coord: 52..62 score: NAcoord: 117..142 score: NAcoord: 161..174 score
None	No IPR available	SEG	seg	seg	coord: 12..24 score
None	No IPR available	SEG	seg	seg	coord: 1..16 score: NAcoord: 23..65 score
None	No IPR available	SEG	seg	seg	coord: 17..34 score: NAcoord: 50..81 score

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>Pisum_sativum_v1_Contig383 ID=Pisum_sativum_v1_Contig383; Name=Pisum_sativum_v1_Contig383; organism=Pisum sativum; type=contig; length=733bp
TGGACAGTTAGGAAAAGGAGAGAGGAGAGTAGGGCTGTTGAAGATTTGTT
GCTGAGCAGTAGGGCTGCCATTAATAGCCCCAATTTTAGTAGAGAACCAT
CGAGAATCATGGATGAGGACTGGAGTGATGAGAAGGCAAGTCCCATCCTA
AGGGAAGCTGCTGAGATGAGTAGCAGCAGTGAAGAGGATGAATATGATGA
CAACATCCAGGCAATGGAATCCGATGACAATGTTGAAGCAGTTGAATATG
GTCAAGGAAACTGGGAGATAGGTTTTAACGGTACCCCCAACAGATGGAAT
AGGGATTTGGTTGGAATGAGTGATGAAGAACAACACTTGGAGGCTTTTGA
AGATGACAATGACAATGTCATTGAAGGGAATGAAGAGGAAGAAGAGGAGG
ATGAGGAGGAAGAGGAGGGTTCTGAAGCTGATGTTATTATGAGTGATGGT
TCAGATGGGATGGCAAATAGAGTTGTAAATGAAGAAAGCTCAGACTCGAG
TGACTCGGAAGATTATTCTGATTAGAACGTTACTACTTTTTATTTGATCA
GCTAGAAAAGATTGCATTTCATGGCTGCGTTACTTTTTTTGACATTGCAG
CTTTTTACAAGGTAAGGGAGGGGGGTACTTGTGCAGTTGTGCTCCACATC
ATGTCATGGCTGGCTCCAAAGGTTTTATAGGTTAATAGAATTATAGTGTA
TATTATCCATATTCTTGTACTTTTAGGCATTTT

Search form

Pisum_sativum_v1_Contig383