GT620258

EST Overview
NameGT620258
Unique NameGT620258
TypeEST
OrganismLens culinaris (lentil)
Sequence length288
Unigenes
This EST is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Lens culinaris unigene v1Lens culinaris unigene v1EST
Libraries
Library NameType
LIBEST_025390 LCUSE1NGcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
Lens culinaris unigene v12010-12-27
Homology Analysis: Lens culinaris unigene v1 vs Trembl2010-12-28
Homology Analysis: Lens culinaris unigene v1 vs TAIR 10 peptide2011-02-03
InterProScan analysis for Lens culinaris unigene v12011-01-06
Homology
BLAST of GT620258 vs. TrEMBL
Match: B9RNG2_RICCO (Heat shock protein binding protein, putative OS=Ricinus communis GN=RCOM_1347440 PE=4 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.340e-12
Identity = 35/52 (67.31%), Postives = 39/52 (75.00%), Query Frame = 1
Query:    1 ENDQSQSLISSCTVNPAVFQGVFCRDLAVVGNLLTQVGFNRPIPVKYEALSC 156
            EN  +     S T N +VFQGVFCRDLA VGNLL+Q GFNRP+PVKYEAL C
Sbjct:  536 ENKPAAVKTPSGTTNQSVFQGVFCRDLATVGNLLSQAGFNRPVPVKYEALRC 587          
BLAST of GT620258 vs. TrEMBL
Match: D7U2G8_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_5.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00028103001 PE=4 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 6.267e-11
Identity = 33/40 (82.50%), Postives = 35/40 (87.50%), Query Frame = 1
Query:   37 TVNPAVFQGVFCRDLAVVGNLLTQVGFNRPIPVKYEALSC 156
            T   +VFQGVFCRDLAVVGNLL+Q GFNR IPVKYEALSC
Sbjct:  519 TSTASVFQGVFCRDLAVVGNLLSQAGFNRQIPVKYEALSC 558          
BLAST of GT620258 vs. TrEMBL
Match: B9I9K7_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_774720 PE=4 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 6.267e-11
Identity = 34/51 (66.67%), Postives = 39/51 (76.47%), Query Frame = 1
Query:    4 NDQSQSLISSCTVNPAVFQGVFCRDLAVVGNLLTQVGFNRPIPVKYEALSC 156
            ND   S  S+ +    VFQGVFCRDLA VGNLL+Q GF+RPIP+KYEALSC
Sbjct:  484 NDNKVSSASAGSTAAPVFQGVFCRDLAAVGNLLSQGGFSRPIPMKYEALSC 534          
BLAST of GT620258 vs. TrEMBL
Match: A5C448_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_036192 PE=4 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 6.267e-11
Identity = 33/40 (82.50%), Postives = 35/40 (87.50%), Query Frame = 1
Query:   37 TVNPAVFQGVFCRDLAVVGNLLTQVGFNRPIPVKYEALSC 156
            T   +VFQGVFCRDLAVVGNLL+Q GFNR IPVKYEALSC
Sbjct:  503 TSTASVFQGVFCRDLAVVGNLLSQAGFNRQIPVKYEALSC 542          
BLAST of GT620258 vs. TrEMBL
Match: B9GSH4_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_552515 PE=4 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.110e-10
Identity = 32/51 (62.75%), Postives = 39/51 (76.47%), Query Frame = 1
Query:    4 NDQSQSLISSCTVNPAVFQGVFCRDLAVVGNLLTQVGFNRPIPVKYEALSC 156
            N+   +  SS +   +VFQGVFCRDLA VGNLL+Q GFNRP+ VK+EALSC
Sbjct:  519 NENKVASASSGSNTASVFQGVFCRDLAAVGNLLSQAGFNRPLAVKFEALSC 569          
BLAST of GT620258 vs. TrEMBL
Match: O22266_ARATH (Putative uncharacterized protein At2g47440 OS=Arabidopsis thaliana GN=At2g47440 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.062e-10
Identity = 30/39 (76.92%), Postives = 33/39 (84.62%), Query Frame = 1
Query:   40 VNPAVFQGVFCRDLAVVGNLLTQVGFNRPIPVKYEALSC 156
            VN   +QGVFCRDLA VGNLLT+ GFN PIPVKYEAL+C
Sbjct:  488 VNSNAYQGVFCRDLAAVGNLLTRAGFNHPIPVKYEALTC 526          
BLAST of GT620258 vs. TrEMBL
Match: D7LGN0_ARALY (DNAJ heat shock N-terminal domain-containing protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_483921 PE=4 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.062e-10
Identity = 30/39 (76.92%), Postives = 33/39 (84.62%), Query Frame = 1
Query:   40 VNPAVFQGVFCRDLAVVGNLLTQVGFNRPIPVKYEALSC 156
            VN   +QGVFCRDLA VGNLLT+ GFN PIPVKYEAL+C
Sbjct:  487 VNSNAYQGVFCRDLAAVGNLLTRAGFNHPIPVKYEALTC 525          
BLAST of GT620258 vs. TrEMBL
Match: D7LT73_ARALY (DNAJ heat shock N-terminal domain-containing protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_486757 PE=4 SV=1)

HSP 1 Score: 62.3882 bits (150), Expect = 1.707e-8
Identity = 26/38 (68.42%), Postives = 33/38 (86.84%), Query Frame = 1
Query:   43 NPAVFQGVFCRDLAVVGNLLTQVGFNRPIPVKYEALSC 156
            N   FQGVFCRDLA VG+LL++ GFN+PIP+KY+A+SC
Sbjct:  514 NSNAFQGVFCRDLAAVGSLLSRTGFNQPIPMKYDAISC 551          
BLAST of GT620258 vs. TrEMBL
Match: D7M452_ARALY (DNAJ heat shock N-terminal domain-containing protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_490370 PE=4 SV=1)

HSP 1 Score: 62.003 bits (149), Expect = 2.229e-8
Identity = 28/43 (65.12%), Postives = 34/43 (79.07%), Query Frame = 1
Query:   28 SSCTVNPAVFQGVFCRDLAVVGNLLTQVGFNRPIPVKYEALSC 156
            +S   N  V +GVFCRDL VVG+L+ + GFN+PIPVKYEALSC
Sbjct:  502 NSTNNNTNVVKGVFCRDLTVVGSLIARTGFNQPIPVKYEALSC 544          
BLAST of GT620258 vs. TrEMBL
Match: Q84VX5_ARATH (At4g02100 OS=Arabidopsis thaliana GN=At4g02100 PE=2 SV=1)

HSP 1 Score: 61.6178 bits (148), Expect = 2.911e-8
Identity = 27/38 (71.05%), Postives = 32/38 (84.21%), Query Frame = 1
Query:   43 NPAVFQGVFCRDLAVVGNLLTQVGFNRPIPVKYEALSC 156
            N  V +GVFCRDL VVG+L+ + GFN+PIPVKYEALSC
Sbjct:  509 NTNVVKGVFCRDLTVVGSLIARTGFNQPIPVKYEALSC 546          
BLAST of GT620258 vs. TAIR peptide
Match: AT2G47440.1 (| Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr2:19469912-19471660 FORWARD LENGTH=526)

HSP 1 Score: 67.781 bits (164), Expect = 1.597e-12
Identity = 30/39 (76.92%), Postives = 33/39 (84.62%), Query Frame = 1
Query:   40 VNPAVFQGVFCRDLAVVGNLLTQVGFNRPIPVKYEALSC 156
            VN   +QGVFCRDLA VGNLLT+ GFN PIPVKYEAL+C
Sbjct:  488 VNSNAYQGVFCRDLAAVGNLLTRAGFNHPIPVKYEALTC 526          
BLAST of GT620258 vs. TAIR peptide
Match: AT4G02100.1 (| Symbols: | Heat shock protein DnaJ with tetratricopeptide repeat | chr4:930228-932049 FORWARD LENGTH=546)

HSP 1 Score: 61.6178 bits (148), Expect = 1.144e-10
Identity = 27/38 (71.05%), Postives = 32/38 (84.21%), Query Frame = 1
Query:   43 NPAVFQGVFCRDLAVVGNLLTQVGFNRPIPVKYEALSC 156
            N  V +GVFCRDL VVG+L+ + GFN+PIPVKYEALSC
Sbjct:  509 NTNVVKGVFCRDLTVVGSLIARTGFNQPIPVKYEALSC 546          
BLAST of GT620258 vs. TAIR peptide
Match: AT3G62570.1 (| Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr3:23142616-23144563 FORWARD LENGTH=552)

HSP 1 Score: 61.2326 bits (147), Expect = 1.495e-10
Identity = 25/38 (65.79%), Postives = 33/38 (86.84%), Query Frame = 1
Query:   43 NPAVFQGVFCRDLAVVGNLLTQVGFNRPIPVKYEALSC 156
            N   +QGVFCRDLA VG+LL++ GFN+PIP+KY+A+SC
Sbjct:  515 NSNAYQGVFCRDLAAVGSLLSRTGFNQPIPMKYDAISC 552          
The following BLAST results are available for this feature:
BLAST of GT620258 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Lens culinaris unigene v1 vs Trembl)
Total hits: 10
Match NameE-valueIdentityDescription
B9RNG2_RICCO4.340e-1267.31Heat shock protein binding protein, putative OS=Ri... [more]
D7U2G8_VITVI6.267e-1182.50Whole genome shotgun sequence of line PN40024, sca... [more]
B9I9K7_POPTR6.267e-1166.67Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]
A5C448_VITVI6.267e-1182.50Putative uncharacterized protein OS=Vitis vinifera... [more]
B9GSH4_POPTR3.110e-1062.75Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]
O22266_ARATH4.062e-1076.92Putative uncharacterized protein At2g47440 OS=Arab... [more]
D7LGN0_ARALY4.062e-1076.92DNAJ heat shock N-terminal domain-containing prote... [more]
D7LT73_ARALY1.707e-868.42DNAJ heat shock N-terminal domain-containing prote... [more]
D7M452_ARALY2.229e-865.12DNAJ heat shock N-terminal domain-containing prote... [more]
Q84VX5_ARATH2.911e-871.05At4g02100 OS=Arabidopsis thaliana GN=At4g02100 PE=... [more]
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BLAST of GT620258 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Lens culinaris unigene v1 vs TAIR 10 peptide)
Total hits: 3
Match NameE-valueIdentityDescription
AT2G47440.11.597e-1276.92| Symbols: | Tetratricopeptide repeat (TPR)-like ... [more]
AT4G02100.11.144e-1071.05| Symbols: | Heat shock protein DnaJ with tetratr... [more]
AT3G62570.11.495e-1065.79| Symbols: | Tetratricopeptide repeat (TPR)-like ... [more]
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InterPro
Analysis Name: InterProScan analysis for Lens culinaris unigene v1
Date Performed: 2011-01-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR22904TPR REPEAT CONTAINING PROTEINcoord: 14..43
score: 7
NoneNo IPR availablePANTHERPTHR22904:SF7SGT-1-RELATEDcoord: 14..43
score: 7

Properties
Property NameValue
Singlet in analysisLens culinaris unigene v1
Sequences
The following sequences are available for this feature:

EST sequence

>GT620258 ID=GT620258; Name=GT620258; organism=Lens culinaris; type=EST; length=288bp
GAAAATGATCAGTCTCAGTCACTGATATCTTCCTGTACTGTGAATCCGGC
GGTGTTTCAAGGTGTGTTTTGCCGCGATCTTGCGGTGGTCGGAAACTTGT
TGACGCAGGTGGGATTTAATCGTCCGATACCGGTGAAGTACGAAGCATTG
AGCTGCTAAGAAAGTTTTGATGAGAAAAATTGGTGGGAGGGGCTGTTGGA
GATGTTACCGGCAGAGGGAATCTCTGGTTCATATTCACTTTATGATTGTA
CAAACAAAATGCAAAGGGTAAAAAACTTTAGACTGCCG
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