GT624551

EST Overview
NameGT624551
Unique NameGT624551
TypeEST
OrganismLens culinaris (lentil)
Sequence length383
Unigenes
This EST is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Lens culinaris unigene v1Lens culinaris unigene v1EST
Libraries
Library NameType
LIBEST_025390 LCUSE1NGcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
Lens culinaris unigene v12010-12-27
Homology Analysis: Lens culinaris unigene v1 vs Trembl2010-12-28
Homology Analysis: Lens culinaris unigene v1 vs TAIR 10 peptide2011-02-03
InterProScan analysis for Lens culinaris unigene v12011-01-06
Homology
BLAST of GT624551 vs. TrEMBL
Match: C6TFG3_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 1.450e-31
Identity = 60/76 (78.95%), Postives = 69/76 (90.79%), Query Frame = 2
Query:    2 DHGIQSVQPVLPEFNSPNFSFGGSMELMAVPKRKVSPHRRGIRNGPKALKPVPVLVLCKGCGRVRLPHFYCCSGKP 229
            D G++S QPVLPEF+ P+FS+G SMELMAVPKRKVSPH+RGIRNGPKALKP+PV+VLCK CGR RLPHF+CC GKP
Sbjct:   39 DLGVRSPQPVLPEFSPPSFSYGSSMELMAVPKRKVSPHKRGIRNGPKALKPIPVIVLCKSCGRARLPHFFCCGGKP 114          
BLAST of GT624551 vs. TrEMBL
Match: B9HIA0_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_820493 PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 7.705e-25
Identity = 49/61 (80.33%), Postives = 56/61 (91.80%), Query Frame = 2
Query:   41 FNSPNFSFGGSMELMAVPKRKVSPHRRGIRNGPKALKPVPVLVLCKGCGRVRLPHFYCCSG 223
            F  P FSFGGSMELMAVPKRKV+PH+RGIRNGPKALKP+PV++ CK CG+V+LPHFYCCSG
Sbjct:   68 FGLPGFSFGGSMELMAVPKRKVTPHKRGIRNGPKALKPIPVIIRCKSCGQVKLPHFYCCSG 128          
BLAST of GT624551 vs. TrEMBL
Match: B6EV28_POPAL (Ribosomal protein L32 OS=Populus alba GN=rpl32 PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 7.705e-25
Identity = 49/61 (80.33%), Postives = 56/61 (91.80%), Query Frame = 2
Query:   41 FNSPNFSFGGSMELMAVPKRKVSPHRRGIRNGPKALKPVPVLVLCKGCGRVRLPHFYCCSG 223
            F  P FSFGGSMELMAVPKRKV+PH+RGIRNGPKALKP+PV++ CK CG+V+LPHFYCCSG
Sbjct:   68 FTFPGFSFGGSMELMAVPKRKVTPHKRGIRNGPKALKPIPVIIRCKSCGQVKLPHFYCCSG 128          
BLAST of GT624551 vs. TrEMBL
Match: B9HXW1_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_659270 PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.314e-24
Identity = 55/89 (61.80%), Postives = 64/89 (71.91%), Query Frame = 2
Query:    2 DHGIQSVQPVLPEFNS---------------PNFSFGGSMELMAVPKRKVSPHRRGIRNGPKALKPVPVLVLCKGCGRVRLPHFYCCSG 223
            +  I S Q  LPEF++               P FSFGGSMELMAVPKRKV+PH+RGIRNGPKALKP PV++ CK CG+V+LPHFYCCSG
Sbjct:   40 ESSIASPQFTLPEFDANQDTSNNSSDFGFTFPGFSFGGSMELMAVPKRKVTPHKRGIRNGPKALKPTPVIIRCKSCGQVKLPHFYCCSG 128          
BLAST of GT624551 vs. TrEMBL
Match: B9S906_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0837620 PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 8.519e-24
Identity = 54/93 (58.06%), Postives = 65/93 (69.89%), Query Frame = 2
Query:    2 DHGIQSVQPVLPEFNS------------------PNFSFGGSMELMAVPKRKVSPHRRGIRNGPKALKPVPVLVLCKGCGRVRLPHFYCCSGK 226
            ++ I   Q VLPEFN                   P+FSFGGSM+LMAVPK+KVS H+RGIRNGPKALKP PV++ C+ CGRV+LPHFYCCSG+
Sbjct:   39 NNAIAPPQMVLPEFNPNHDNSNSSYDNNLEFGFLPSFSFGGSMDLMAVPKKKVSRHKRGIRNGPKALKPTPVIIRCRSCGRVKLPHFYCCSGE 131          
BLAST of GT624551 vs. TrEMBL
Match: D7KQM2_ARALY (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_472732 PE=4 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.113e-23
Identity = 52/90 (57.78%), Postives = 64/90 (71.11%), Query Frame = 2
Query:    2 DHGIQSVQPVLPEFNS---------------PNFSFGGSMELMAVPKRKVSPHRRGIRNGPKALKPVPVLVLCKGCGRVRLPHFYCCSGK 226
            D  I    PVLPEF+                P+F+F GSMELMAVPK+K+S H+RGIRNGPKALKPVPV++ C+ CGRV+LPHF+CCSG+
Sbjct:   39 DRPISMPPPVLPEFDQNQPGLIDEKSFGFGLPSFAFNGSMELMAVPKKKISKHKRGIRNGPKALKPVPVIIRCRSCGRVKLPHFFCCSGE 128          
BLAST of GT624551 vs. TrEMBL
Match: Q944L5_ARATH (At1g26740/T24P13_11 OS=Arabidopsis thaliana GN=At1g26740 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 9.419e-23
Identity = 45/62 (72.58%), Postives = 56/62 (90.32%), Query Frame = 2
Query:   41 FNSPNFSFGGSMELMAVPKRKVSPHRRGIRNGPKALKPVPVLVLCKGCGRVRLPHFYCCSGK 226
            F  P+F+F GSMELMAVPK+K+S H+RGIRNGPKALKPVPV++ C+ CGRV+LPHF+CCSG+
Sbjct:   67 FGLPSFAFNGSMELMAVPKKKISKHKRGIRNGPKALKPVPVIIRCRSCGRVKLPHFFCCSGE 128          
BLAST of GT624551 vs. TrEMBL
Match: Q8LG83_ARATH (Putative uncharacterized protein OS=Arabidopsis thaliana PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.230e-22
Identity = 45/62 (72.58%), Postives = 55/62 (88.71%), Query Frame = 2
Query:   41 FNSPNFSFGGSMELMAVPKRKVSPHRRGIRNGPKALKPVPVLVLCKGCGRVRLPHFYCCSGK 226
            F  P F+F GSMELMAVPK+K+S H+RGIRNGPKALKPVPV++ C+ CGRV+LPHF+CCSG+
Sbjct:   67 FGLPRFAFNGSMELMAVPKKKISKHKRGIRNGPKALKPVPVIIRCRSCGRVKLPHFFCCSGE 128          
BLAST of GT624551 vs. TrEMBL
Match: D7KX19_ARALY (Predicted protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_676457 PE=4 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.320e-21
Identity = 45/62 (72.58%), Postives = 53/62 (85.48%), Query Frame = 2
Query:   41 FNSPNFSFGGSMELMAVPKRKVSPHRRGIRNGPKALKPVPVLVLCKGCGRVRLPHFYCCSGK 226
            F  P   FGGSMELMAVPK+K+S H+RGIRNGPKALKP PV++ C+ CGRV+LPHFYCCSG+
Sbjct:   68 FCFPISFFGGSMELMAVPKKKISKHKRGIRNGPKALKPTPVIIRCRSCGRVKLPHFYCCSGE 129          
BLAST of GT624551 vs. TrEMBL
Match: A9NSJ5_PICSI (Putative uncharacterized protein OS=Picea sitchensis PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.273e-19
Identity = 44/65 (67.69%), Postives = 54/65 (83.08%), Query Frame = 2
Query:   35 PEFNSPNFSFG--GSMELMAVPKRKVSPHRRGIRNGPKALKPVPVLVLCKGCGRVRLPHFYCCSG 223
            P+  S    FG  GSM+LMAVPKRKV+PHR+GIRNGPKALKP P+++ CK CGRV+LPHF+CC+G
Sbjct:    9 PQQESGMEEFGPVGSMQLMAVPKRKVTPHRKGIRNGPKALKPAPLIMRCKSCGRVKLPHFFCCTG 73          
BLAST of GT624551 vs. TAIR peptide
Match: AT1G26740.1 (| Symbols: | Ribosomal L32p protein family | chr1:9245280-9246555 REVERSE LENGTH=134)

HSP 1 Score: 109.768 bits (273), Expect = 4.458e-25
Identity = 45/62 (72.58%), Postives = 56/62 (90.32%), Query Frame = 2
Query:   41 FNSPNFSFGGSMELMAVPKRKVSPHRRGIRNGPKALKPVPVLVLCKGCGRVRLPHFYCCSGK 226
            F  P+F+F GSMELMAVPK+K+S H+RGIRNGPKALKPVPV++ C+ CGRV+LPHF+CCSG+
Sbjct:   67 FGLPSFAFNGSMELMAVPKKKISKHKRGIRNGPKALKPVPVIIRCRSCGRVKLPHFFCCSGE 128          
BLAST of GT624551 vs. TAIR peptide
Match: AT1G69485.1 (| Symbols: | Ribosomal L32p protein family | chr1:26118533-26119342 REVERSE LENGTH=63)

HSP 1 Score: 94.7449 bits (234), Expect = 1.484e-20
Identity = 38/51 (74.51%), Postives = 46/51 (90.20%), Query Frame = 2
Query:   74 MELMAVPKRKVSPHRRGIRNGPKALKPVPVLVLCKGCGRVRLPHFYCCSGK 226
            MELMAVPK+K+S H+RGIRNGPKA KP PV++ C+ CGRV+LPHFYCCSG+
Sbjct:    1 MELMAVPKKKISKHKRGIRNGPKAFKPTPVIIRCRSCGRVKLPHFYCCSGE 51          
The following BLAST results are available for this feature:
BLAST of GT624551 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Lens culinaris unigene v1 vs Trembl)
Total hits: 10
Match NameE-valueIdentityDescription
C6TFG3_SOYBN1.450e-3178.95Putative uncharacterized protein OS=Glycine max PE... [more]
B9HIA0_POPTR7.705e-2580.33Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]
B6EV28_POPAL7.705e-2580.33Ribosomal protein L32 OS=Populus alba GN=rpl32 PE=... [more]
B9HXW1_POPTR1.314e-2461.80Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]
B9S906_RICCO8.519e-2458.06Putative uncharacterized protein OS=Ricinus commun... [more]
D7KQM2_ARALY1.113e-2357.78Putative uncharacterized protein OS=Arabidopsis ly... [more]
Q944L5_ARATH9.419e-2372.58At1g26740/T24P13_11 OS=Arabidopsis thaliana GN=At1... [more]
Q8LG83_ARATH1.230e-2272.58Putative uncharacterized protein OS=Arabidopsis th... [more]
D7KX19_ARALY2.320e-2172.58Predicted protein OS=Arabidopsis lyrata subsp. lyr... [more]
A9NSJ5_PICSI1.273e-1967.69Putative uncharacterized protein OS=Picea sitchens... [more]
back to top
BLAST of GT624551 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Lens culinaris unigene v1 vs TAIR 10 peptide)
Total hits: 2
Match NameE-valueIdentityDescription
AT1G26740.14.458e-2572.58| Symbols: | Ribosomal L32p protein family | chr1... [more]
AT1G69485.11.484e-2074.51| Symbols: | Ribosomal L32p protein family | chr1... [more]
back to top
InterPro
Analysis Name: InterProScan analysis for Lens culinaris unigene v1
Date Performed: 2011-01-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002677Ribosomal protein L32pHAMAPMF_00340Ribosomal_L32coord: 28..89
score: 10
IPR002677Ribosomal protein L32pPFAMPF01783Ribosomal_L32pcoord: 29..73
score: 1.1
IPR002677Ribosomal protein L32pTIGRFAMsTIGR01031rpmF_bact: ribosomal protein L32coord: 29..68
score: 2.1
IPR011332Ribosomal protein, zinc-binding domainSUPERFAMILY57829Zn-binding ribosomal proteinscoord: 29..74
score: 1.3
NoneNo IPR availableSEGsegsegcoord: 43..55
score

Properties
Property NameValue
Singlet in analysisLens culinaris unigene v1
Sequences
The following sequences are available for this feature:

EST sequence

>GT624551 ID=GT624551; Name=GT624551; organism=Lens culinaris; type=EST; length=383bp
TGACCATGGGATTCAGTCAGTGCAACCCGTTTTGCCTGAATTTAATTCCC
CAAATTTCTCTTTTGGTGGCTCCATGGAGCTCATGGCTGTTCCAAAGAGG
AAGGTTTCTCCTCATAGAAGAGGAATACGAAATGGACCAAAAGCTTTGAA
GCCAGTTCCTGTGCTTGTCCTGTGCAAGGGTTGTGGTCGTGTTAGGCTTC
CACATTTCTACTGTTGCAGTGGGAAACCAAATAGTGAAAATAATGGTGAA
GAGAATCGGGCACGTGAGTAAAGTTGACAGCGCGCACTAGAATAAAGTTG
ACGGGCAAATTTATTTTGATTGTTTTGTGGTAGTAATACATTGTAATGCA
TTACTTCCTTCTTCATTAAGAAATTTGATTTTT
back to top
Annotated Terms
The following terms have been associated with this EST:
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Cellular Component
TermDefinition
GO:0015934large ribosomal subunit
GO:0005622intracellular anatomical structure
GO:0005840ribosome
Vocabulary: INTERPRO
TermDefinition
IPR002677Ribosomal_L32p
IPR011332Ribosomal_zn-bd