GT627397

EST Overview
NameGT627397
Unique NameGT627397
TypeEST
OrganismLens culinaris (lentil)
Sequence length458
Unigenes
This EST is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Lens culinaris unigene v1Lens culinaris unigene v1EST
Libraries
Library NameType
LIBEST_025390 LCUSE1NGcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
Lens culinaris unigene v12010-12-27
Homology Analysis: Lens culinaris unigene v1 vs Trembl2010-12-28
Homology Analysis: Lens culinaris unigene v1 vs TAIR 10 peptide2011-02-03
InterProScan analysis for Lens culinaris unigene v12011-01-06
Homology
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BLAST of GT627397 vs. TrEMBL
Match: C6T570_SOYBN (Putative uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 7.829e-22
Identity = 60/118 (50.85%), Postives = 71/118 (60.17%), Query Frame = 3 
Query:   15 MRTGA---YDFTQKLFPRKTIATTTNPRLQTTSPHFFLQPNRMAESVGASNTPASHPIQPNPDSNTVXXXXXXXXXXXXXXX--CCGSGCVRCVWDVYYDQLEEYDKLYKHGETNPKP 353
            MRT A   + FTQKL P    +T T+  LQ T P +FLQ NRMAE+   ++ PA HPIQP PD  T                  CCGSGCVRCVWDVYYD+LEEY+K YK  + +PKP
Sbjct:    1 MRTTAPSDFIFTQKLHPFNITSTKTS--LQRTLP-YFLQLNRMAEAARTAHKPAPHPIQPKPDDKTPNPAKEIPPPPEKPEPGDCCGSGCVRCVWDVYYDELEEYNKRYKQVDPSPKP 115
[Close]
BLAST of GT627397 vs. TrEMBL
Match: B9HFC2_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_563235 PE=4 SV=1)

HSP 1 Score: 63.1586 bits (152), Expect = 9.926e-9
Identity = 24/26 (92.31%), Postives = 26/26 (100.00%), Query Frame = 3 
Query:  252 CCGSGCVRCVWDVYYDQLEEYDKLYK 329
            CCGSGCVRCVWDVYY++LEEYDKLYK
Sbjct:   43 CCGSGCVRCVWDVYYEELEEYDKLYK 68
[Close]
BLAST of GT627397 vs. TrEMBL
Match: A9P8F3_POPTR (Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1)

HSP 1 Score: 63.1586 bits (152), Expect = 9.926e-9
Identity = 24/26 (92.31%), Postives = 26/26 (100.00%), Query Frame = 3 
Query:  252 CCGSGCVRCVWDVYYDQLEEYDKLYK 329
            CCGSGCVRCVWDVYY++LEEYDKLYK
Sbjct:  111 CCGSGCVRCVWDVYYEELEEYDKLYK 136
[Close]
BLAST of GT627397 vs. TrEMBL
Match: B9T5Y8_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0415520 PE=4 SV=1)

HSP 1 Score: 61.6178 bits (148), Expect = 2.888e-8
Identity = 23/34 (67.65%), Postives = 29/34 (85.29%), Query Frame = 3 
Query:  252 CCGSGCVRCVWDVYYDQLEEYDKLYKHGETNPKP 353
            CCGSGCVRCVWDVYY++LEEY+KLY+    + +P
Sbjct:   39 CCGSGCVRCVWDVYYEELEEYNKLYQSHSDSKRP 72
[Close]
BLAST of GT627397 vs. TAIR peptide
Match: AT5G17280.1 (| Symbols: | CONTAINS InterPro DOMAIN/s: Oxidoreductase-like, N-terminal (InterPro:IPR019180); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:5686355-5686762 FORWARD LENGTH=135)

HSP 1 Score: 55.8398 bits (133), Expect = 1.184e-8
Identity = 23/30 (76.67%), Postives = 26/30 (86.67%), Query Frame = 3 
Query:  252 CCGSGCVRCVWDVYYDQLEEYDKLYKHGET 341
            CCGSGCVRCVWDVYYD+LE+Y+K    GET
Sbjct:  104 CCGSGCVRCVWDVYYDELEDYNKQLS-GET 132
The following BLAST results are available for this feature:
BLAST of GT627397 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Lens culinaris unigene v1 vs Trembl)
Total hits: 4
Match NameE-valueIdentityDescription
C6T570_SOYBN7.829e-2250.85Putative uncharacterized protein OS=Glycine max PE... [more]
B9HFC2_POPTR9.926e-992.31Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]
A9P8F3_POPTR9.926e-992.31Putative uncharacterized protein OS=Populus tricho... [more]
B9T5Y8_RICCO2.888e-867.65Putative uncharacterized protein OS=Ricinus commun... [more]
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BLAST of GT627397 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Lens culinaris unigene v1 vs TAIR 10 peptide)
Total hits: 1
Match NameE-valueIdentityDescription
AT5G17280.11.184e-876.67| Symbols: | CONTAINS InterPro DOMAIN/s: Oxidored... [more]
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InterPro
Analysis Name: InterProScan analysis for Lens culinaris unigene v1
Date Performed: 2011-01-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSEGsegsegcoord: 13..29
score
NoneNo IPR availableSEGsegsegcoord: 18..31
score
NoneNo IPR availableSEGsegsegcoord: 69..83
score
NoneNo IPR availableSEGsegsegcoord: 14..27
score
NoneNo IPR availableSEGsegsegcoord: 37..51
score: NAcoord: 58..67
score
IPR019180Oxidoreductase-like, N-terminalPFAMPF09791Oxidored-likecoord: 71..109
score: 6.9

Properties
Property NameValue
Singlet in analysisLens culinaris unigene v1
Sequences
The following sequences are available for this feature:

EST sequence

>GT627397 ID=GT627397; Name=GT627397; organism=Lens culinaris; type=EST; length=458bp
CGGCGCCATTCACCATGAGAACAGGCGCTTACGATTTCACACAAAAACTC
TTCCCTCGAAAGACCATAGCCACCACCACAAACCCTCGCCTTCAAACAAC
CTCACCCCATTTCTTTCTCCAACCCAATCGCATGGCCGAATCCGTAGGAG
CCTCCAACACACCCGCGTCGCACCCGATCCAACCTAATCCTGATTCCAAC
ACCGTTAAGAAGGAGATTCCTCCTCCGCCGGAGAAACCAGATCCCGACGA
CTGTTGTGGTAGCGGTTGCGTTAGATGTGTTTGGGATGTTTATTATGACC
AGCTTGAAGAATATGATAAGCTTTACAAACACGGGGAGACTAACCCTAAA
CCCTGATTTTAGGGTTTGTTGTAATTTTGTAATGTTAATATTCTCTGTTT
GTATCTACTTTTTGTTTAATACTCAACATTACCATAAATTAATTCATTTT
AATTATTA
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Annotated Terms
The following terms have been associated with this EST:
Vocabulary: INTERPRO
TermDefinition
IPR019180Oxidoreductase-like_N