GT620578

EST Overview
NameGT620578
Unique NameGT620578
TypeEST
OrganismLens culinaris (lentil)
Sequence length743
Unigenes
This EST is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Lens culinaris unigene v1Lens culinaris unigene v1EST
Libraries
Library NameType
LIBEST_025390 LCUSE1NGcdna_library
Homology
BLAST of GT620578 vs. TrEMBL
Match: C6SZ30_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 8.925e-36
Identity = 78/129 (60.47%), Postives = 89/129 (68.99%), Query Frame = 2
Query:   59 MASLNSHHF----SXXXXXXXXXXXXXHPASTSVH-QP----RELLYEEKNKLGSIPPSCHSKCHECHPCMAVQVPSVPSHDSLPPQLTKASPMEKLVAPSVQGSANNRYSNYKPLGWKCHCGDHFFNP 418
            MASLNS+H+    S               AS S H QP    RELL+EEKN+LGSIPPSCH+KC++CHPCMAVQVP++PSHDS PP LTK + M   + PS      NRYSNYKPLGWKCHCGDHFFNP
Sbjct:    1 MASLNSYHYYTNTSLLIILLLHNLFSLSLASASNHPQPAISTRELLFEEKNRLGSIPPSCHNKCNDCHPCMAVQVPTLPSHDSNPPDLTKTAAMATFLNPS--SPQGNRYSNYKPLGWKCHCGDHFFNP 127          
BLAST of GT620578 vs. TrEMBL
Match: B9T3Q4_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0038230 PE=4 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 9.890e-27
Identity = 53/83 (63.86%), Postives = 64/83 (77.11%), Query Frame = 2
Query:  170 YEEKNKLGSIPPSCHSKCHECHPCMAVQVPSVPSHDSLPPQLTKASPMEKLVAPSVQGSANNRYSNYKPLGWKCHCGDHFFNP 418
            +E+K +LGS PPSCH+KC+ CHPCMAVQVP+VPSH+ + P L K++  E L  P   G   NRYSNYKPLGWKCHCG HF+NP
Sbjct:    9 FEDKTRLGSTPPSCHNKCNGCHPCMAVQVPTVPSHNRVEPGLAKSATTEFLFDPYPSG---NRYSNYKPLGWKCHCGGHFYNP 88          
BLAST of GT620578 vs. TrEMBL
Match: B9HFE6_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_562574 PE=4 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 1.023e-23
Identity = 51/84 (60.71%), Postives = 62/84 (73.81%), Query Frame = 2
Query:  170 YEEKNKLGSIPPSCHSKCHECHPCMAVQVPSVPSHD-SLPPQLTKASPMEKLVAPSVQGSANNRYSNYKPLGWKCHCGDHFFNP 418
            +EEK +LGS PPSCH+KC+ CHPCMAVQVP++P+ +    P  TK S ++    P   G  NNRYSNYKPLGWKC CGDHF+NP
Sbjct:   43 FEEKARLGSTPPSCHNKCNGCHPCMAVQVPTLPNQNRPAQPVSTKTSIIDPFFDPYPAG--NNRYSNYKPLGWKCRCGDHFYNP 124          
BLAST of GT620578 vs. TrEMBL
Match: D7M2V8_ARALY (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_487859 PE=4 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 2.359e-20
Identity = 43/92 (46.74%), Postives = 63/92 (68.48%), Query Frame = 2
Query:  149 HQPRELLYEEKNKLGSIPPSCHSKCHECHPCMAVQVPSVPSHDSLPPQLTKASPMEK--LVAPSVQGSANNRYSNYKPLGWKCHCGDHFFNP 418
            + P+  L E+K +LGS PPSCH++C+ CHPCMA+QVP++P+      + T+ +P     +  PS   +  ++YSNYKP+GWKCHC  HF+NP
Sbjct:   31 NSPQVALIEDKARLGSTPPSCHNRCNNCHPCMAIQVPTLPTRS----RFTRVNPFSGGFVRPPSSLTTVLDQYSNYKPMGWKCHCNGHFYNP 118          
BLAST of GT620578 vs. TrEMBL
Match: B9H4S2_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_1077355 PE=4 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 8.966e-20
Identity = 45/90 (50.00%), Postives = 63/90 (70.00%), Query Frame = 2
Query:  155 PRELLYEEKNKLGSIPPSCHSKCHECHPCMAVQVPSVPSHDSLPPQL--TKASPMEKLVAPSVQGSANNRYSNYKPLGWKCHCGDHFFNP 418
            P+ + +EEK +LGS PPSCH+KC+ CHPC+AVQVP++PS +  P Q+   K S +++         A NR+ +Y+PLGWKC C DHF+NP
Sbjct:   41 PQGIAFEEKARLGSTPPSCHNKCNGCHPCIAVQVPALPSQNE-PVQMGSAKTSSIDEFFD---SYPAGNRFPDYRPLGWKCRCADHFYNP 126          
BLAST of GT620578 vs. TrEMBL
Match: Q4ABN9_BRARP (80A08_28 OS=Brassica rapa subsp. pekinensis GN=80A08_28 PE=4 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 3.407e-19
Identity = 43/92 (46.74%), Postives = 59/92 (64.13%), Query Frame = 2
Query:  149 HQPRELLYEEKNKLGSIPPSCHSKCHECHPCMAVQVPSVPSHDSLPPQLTKASPMEK--LVAPSVQGSANNRYSNYKPLGWKCHCGDHFFNP 418
            + P+  L E+K +LGS PPSCH+ C+ CHPCM  QVP++PS      + T+  P     +  PS   +  ++YSNYKP+GWKCHC  HF+NP
Sbjct:   33 NSPQVALVEDKARLGSTPPSCHNSCNGCHPCMPTQVPTLPSRS----RFTRVDPFSGGFVRPPSSLTTVLDQYSNYKPMGWKCHCNGHFYNP 120          
BLAST of GT620578 vs. TrEMBL
Match: D5ABF8_PICSI (Putative uncharacterized protein OS=Picea sitchensis PE=4 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 8.392e-18
Identity = 41/82 (50.00%), Postives = 56/82 (68.29%), Query Frame = 2
Query:  173 EEKNKLGSIPPSCHSKCHECHPCMAVQVPSVPSHDSLPPQLTKASPMEKLVAPSVQGSANNRYSNYKPLGWKCHCGDHFFNP 418
            E+  +LGSIPPSC +KC+ C+PC A+QVP++P+HD    Q+ K S       PS    A+ +Y+NYKP+GWKC CG+  FNP
Sbjct:   39 EDMTRLGSIPPSCRNKCNACNPCKAIQVPTLPNHD----QVHKVSQ-----RPSPSTEASKKYTNYKPIGWKCKCGNRLFNP 111          
BLAST of GT620578 vs. TrEMBL
Match: C5XYC0_SORBI (Putative uncharacterized protein Sb04g027410 OS=Sorghum bicolor GN=Sb04g027410 PE=4 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.481e-14
Identity = 39/93 (41.94%), Postives = 57/93 (61.29%), Query Frame = 2
Query:  140 TSVHQPRELLYEEKNKLGSIPPSCHSKCHECHPCMAVQVPSVPSHDSLPPQLTKASPMEKLVAPSVQGSANNRYSNYKPLGWKCHCGDHFFNP 418
            T+   P + L E+K++LGS PPSCH++C  C+PCM VQV + P        L +A+   ++   +V  +  +RYSNYKPLGWKC C    ++P
Sbjct:   29 TATFSPSQNLAEDKSRLGSTPPSCHNRCSACNPCMPVQVTTAPG-------LGRAA---RVADDTVTVAGFSRYSNYKPLGWKCRCDGRLYDP 111          
BLAST of GT620578 vs. TrEMBL
Match: D7TG21_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_391.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00006628001 PE=4 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 4.765e-13
Identity = 34/55 (61.82%), Postives = 41/55 (74.55%), Query Frame = 2
Query:  158 RELLYEEKNKLGSIPPSCHSKCHECHPCMAVQVPSVPSHDSLPPQLTKASPMEKL 322
            R LL+EEK +LGS PPSCH+KC+ECHPCMAVQVP++PSH      LT   P + L
Sbjct:   61 RGLLFEEKTRLGSTPPSCHNKCNECHPCMAVQVPTLPSHSGPRLGLTATGPWDSL 115          
BLAST of GT620578 vs. TrEMBL
Match: B6UFK7_MAIZE (Putative uncharacterized protein OS=Zea mays PE=4 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 6.224e-13
Identity = 40/95 (42.11%), Postives = 58/95 (61.05%), Query Frame = 2
Query:  134 ASTSVHQPRELLYEEKNKLGSIPPSCHSKCHECHPCMAVQVPSVPSHDSLPPQLTKASPMEKLVAPSVQGSANNRYSNYKPLGWKCHCGDHFFNP 418
            A+ S  Q +E L E+K++LGS PP C ++C  C+PCM VQV + P+       L +A+ +    A +V G   +RYS+YKPLGWKC C    ++P
Sbjct:   29 ATFSPSQAQENLAEDKSRLGSTPPICRNRCSACNPCMPVQVTTAPA------GLGRAARVTDADADAVAGF--SRYSDYKPLGWKCGCDGRLYDP 115          
BLAST of GT620578 vs. SwissProt
Match: EPFL1_ARATH (EPIDERMAL PATTERNING FACTOR-like protein 1 OS=Arabidopsis thaliana GN=EPFL1 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.028e-21
Identity = 43/90 (47.78%), Postives = 62/90 (68.89%), Query Frame = 2
Query:  155 PRELLYEEKNKLGSIPPSCHSKCHECHPCMAVQVPSVPSHDSLPPQLTKASPMEK--LVAPSVQGSANNRYSNYKPLGWKCHCGDHFFNP 418
            P+  L E+K +LGS PPSCH++C+ CHPCMA+QVP++P+      + T+ +P     +  PS   +  ++YSNYKP+GWKCHC  HF+NP
Sbjct:   37 PQVALIEDKARLGSTPPSCHNRCNNCHPCMAIQVPTLPTRS----RFTRVNPFSGGFVRPPSSLTTVLDQYSNYKPMGWKCHCNGHFYNP 122          
BLAST of GT620578 vs. SwissProt
Match: EPFL3_ARATH (EPIDERMAL PATTERNING FACTOR-like protein 3 OS=Arabidopsis thaliana GN=EPFL3 PE=3 SV=1)

HSP 1 Score: 63.1586 bits (152), Expect = 1.781e-9
Identity = 27/83 (32.53%), Postives = 42/83 (50.60%), Query Frame = 2
Query:  149 HQPRELLYEEKNKLGSIPPSCHSKCHECHPCMAVQVPSVPSHDSLPPQLTKASPMEKLVAPSVQGSANNRYSNYKPLGWKCHC 397
            ++ +E + + + ++GS PPSC  KC+ C PC A+Q P++ S   L P                       Y+NY+P GW+CHC
Sbjct:   44 NENKEEIVKRRRRIGSKPPSCEKKCYGCEPCEAIQFPTISSIPHLSP----------------------HYANYQPEGWRCHC 104          
BLAST of GT620578 vs. SwissProt
Match: EPFL2_ARATH (EPIDERMAL PATTERNING FACTOR-like protein 2 OS=Arabidopsis thaliana GN=EPFL2 PE=2 SV=1)

HSP 1 Score: 58.151 bits (139), Expect = 5.729e-8
Identity = 27/78 (34.62%), Postives = 41/78 (52.56%), Query Frame = 2
Query:  188 LGSIPPSCHS-KCHECHPCMAVQVPSVPSHDSLPPQLTKASPMEKLVAPSVQGSANNRYSNYKPLGWKCHCGDHFFNP 418
            +GS PP C   +C  C  C A+QVP+ P      P  T +S   + +   +  +  +  +NYKP+ WKC CG+  +NP
Sbjct:   53 IGSRPPRCERVRCRSCGHCEAIQVPTNPQTKLHSPLTTSSSSSSETI--HLDYTRGDDSTNYKPMSWKCKCGNSIYNP 128          
BLAST of GT620578 vs. TAIR peptide
Match: AT5G10310.1 (| Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G13898.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:3241666-3242127 REVERSE LENGTH=122)

HSP 1 Score: 102.834 bits (255), Expect = 2.017e-22
Identity = 43/90 (47.78%), Postives = 62/90 (68.89%), Query Frame = 2
Query:  155 PRELLYEEKNKLGSIPPSCHSKCHECHPCMAVQVPSVPSHDSLPPQLTKASPMEK--LVAPSVQGSANNRYSNYKPLGWKCHCGDHFFNP 418
            P+  L E+K +LGS PPSCH++C+ CHPCMA+QVP++P+      + T+ +P     +  PS   +  ++YSNYKP+GWKCHC  HF+NP
Sbjct:   37 PQVALIEDKARLGSTPPSCHNRCNNCHPCMAIQVPTLPTRS----RFTRVNPFSGGFVRPPSSLTTVLDQYSNYKPMGWKCHCNGHFYNP 122          
BLAST of GT620578 vs. TAIR peptide
Match: AT3G13898.1 (| Symbols: | unknown protein; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G10310.1). | chr3:4584011-4584334 FORWARD LENGTH=107)

HSP 1 Score: 63.1586 bits (152), Expect = 1.771e-10
Identity = 27/83 (32.53%), Postives = 42/83 (50.60%), Query Frame = 2
Query:  149 HQPRELLYEEKNKLGSIPPSCHSKCHECHPCMAVQVPSVPSHDSLPPQLTKASPMEKLVAPSVQGSANNRYSNYKPLGWKCHC 397
            ++ +E + + + ++GS PPSC  KC+ C PC A+Q P++ S   L P                       Y+NY+P GW+CHC
Sbjct:   44 NENKEEIVKRRRRIGSKPPSCEKKCYGCEPCEAIQFPTISSIPHLSP----------------------HYANYQPEGWRCHC 104          
BLAST of GT620578 vs. TAIR peptide
Match: AT4G37810.1 (| Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G10310.1); Has 149 Blast hits to 149 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 149; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:17780970-17781544 FORWARD LENGTH=128)

HSP 1 Score: 58.151 bits (139), Expect = 5.698e-9
Identity = 27/78 (34.62%), Postives = 41/78 (52.56%), Query Frame = 2
Query:  188 LGSIPPSCHS-KCHECHPCMAVQVPSVPSHDSLPPQLTKASPMEKLVAPSVQGSANNRYSNYKPLGWKCHCGDHFFNP 418
            +GS PP C   +C  C  C A+QVP+ P      P  T +S   + +   +  +  +  +NYKP+ WKC CG+  +NP
Sbjct:   53 IGSRPPRCERVRCRSCGHCEAIQVPTNPQTKLHSPLTTSSSSSSETI--HLDYTRGDDSTNYKPMSWKCKCGNSIYNP 128          
The following BLAST results are available for this feature:
BLAST of GT620578 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Lens culinaris unigene v1 vs Trembl)
Total hits: 10
Match NameE-valueIdentityDescription
C6SZ30_SOYBN8.925e-3660.47Putative uncharacterized protein OS=Glycine max PE... [more]
B9T3Q4_RICCO9.890e-2763.86Putative uncharacterized protein OS=Ricinus commun... [more]
B9HFE6_POPTR1.023e-2360.71Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]
D7M2V8_ARALY2.359e-2046.74Putative uncharacterized protein OS=Arabidopsis ly... [more]
B9H4S2_POPTR8.966e-2050.00Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]
Q4ABN9_BRARP3.407e-1946.7480A08_28 OS=Brassica rapa subsp. pekinensis GN=80A... [more]
D5ABF8_PICSI8.392e-1850.00Putative uncharacterized protein OS=Picea sitchens... [more]
C5XYC0_SORBI1.481e-1441.94Putative uncharacterized protein Sb04g027410 OS=So... [more]
D7TG21_VITVI4.765e-1361.82Whole genome shotgun sequence of line PN40024, sca... [more]
B6UFK7_MAIZE6.224e-1342.11Putative uncharacterized protein OS=Zea mays PE=4 ... [more]
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BLAST of GT620578 vs. SwissProt
Analysis Date: 2010-12-28 (Homology Analysis: Lens culinaris unigene v1 vs Swissprot)
Total hits: 3
Match NameE-valueIdentityDescription
EPFL1_ARATH2.028e-2147.78EPIDERMAL PATTERNING FACTOR-like protein 1 OS=Arab... [more]
EPFL3_ARATH1.781e-932.53EPIDERMAL PATTERNING FACTOR-like protein 3 OS=Arab... [more]
EPFL2_ARATH5.729e-834.62EPIDERMAL PATTERNING FACTOR-like protein 2 OS=Arab... [more]
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BLAST of GT620578 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Lens culinaris unigene v1 vs TAIR 10 peptide)
Total hits: 3
Match NameE-valueIdentityDescription
AT5G10310.12.017e-2247.78| Symbols: | unknown protein; FUNCTIONS IN: molec... [more]
AT3G13898.11.771e-1032.53| Symbols: | unknown protein; LOCATED IN: endomem... [more]
AT4G37810.15.698e-934.62| Symbols: | unknown protein; FUNCTIONS IN: molec... [more]
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InterPro
Analysis Name: InterProScan analysis for Lens culinaris unigene v1
Date Performed: 2011-01-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSEGsegsegcoord: 16..27
score
NoneNo IPR availableSEGsegsegcoord: 14..26
score

Properties
Property NameValue
Singlet in analysisLens culinaris unigene v1
Sequences
The following sequences are available for this feature:

EST sequence

>GT620578 ID=GT620578; Name=GT620578; organism=Lens culinaris; type=EST; length=743bp
TCATCACTCTTCTTCTTCTTTCTCACTTCAAAGGGTTGAACTAACCTAAT
ATGCATTCATGGCTTCACTTAATTCACATCACTTCTCCACAACCACCACT
ACCTTGTTTATCCTACTTCTTCTCCTTCATCCAGCTTCTACCTCAGTTCA
TCAACCAAGGGAATTGTTATACGAGGAGAAAAACAAACTAGGTTCAATTC
CACCAAGCTGTCACAGCAAATGCCACGAGTGTCATCCATGCATGGCAGTA
CAAGTTCCATCTGTACCAAGCCATGATTCTCTCCCTCCTCAACTCACCAA
AGCTTCTCCCATGGAAAAATTGGTTGCTCCATCTGTACAAGGTAGTGCTA
ATAACAGATACTCAAATTACAAACCATTAGGTTGGAAATGTCACTGCGGT
GACCACTTCTTCAACCCATAATCATCACAAGATCCAACATTTTGCTTGCT
CAATCTTTATTTATTTATTTTTGTTACTAAATTATTAATGAATACTGGTA
TTAATTTATGTGGTTAAAGCTTGCGTCAGCATTGGTCGTATACAAGTTTG
ATGATAGTAGTACTACACATGTACAAAAGTTTGTTATAGACCTGAATCGC
TAGTTTATGAGTAGCTGTATCTATATTTTTGAGAAAAGGTTTTGTGTGTG
TTGAATTTATGATAAGGGATGTGATTGGTGTCTATAGTCTCGACTTGTAA
TTGCAATTTACGATGATTATCTGGTAATTTTCTTGTCAGAAAA
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