GT627181

EST Overview
NameGT627181
Unique NameGT627181
TypeEST
OrganismLens culinaris (lentil)
Sequence length716
Unigenes
This EST is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Lens culinaris unigene v1Lens culinaris unigene v1EST
Libraries
Library NameType
LIBEST_025390 LCUSE1NGcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
Lens culinaris unigene v12010-12-27
Homology Analysis: Lens culinaris unigene v1 vs Trembl2010-12-28
Homology Analysis: Lens culinaris unigene v1 vs TAIR 10 peptide2011-02-03
InterProScan analysis for Lens culinaris unigene v12011-01-06
Homology
BLAST of GT627181 vs. TrEMBL
Match: Q4U6G1_PEA (LITAF-domain-containing protein OS=Pisum sativum GN=LITAF PE=4 SV=1)

HSP 1 Score: 275.018 bits (702), Expect = 4.173e-72
Identity = 123/129 (95.35%), Postives = 127/129 (98.45%), Query Frame = -2
Query:  113 RNEEEEVAVGVPVYERNGIPPNALIGDPKGIPIQQTIFRDTPAPFNCPHCGHTALTTVRSKISLAAFVGCLMPMMIGVCFLCPSMDCLWHKYHYCPDCQQKVADFEKSDICAVMDPPNWTQESFALARY 499
            R EEEEVAVGVPVYERNGIPPNALIGDPKGIPIQQTI+RDTPAPFNCPHCGHT+LT+VRSKISLAAFVGCLMPMM+GVCFLCPSMDCLWHKYHYCPDC QKVADFEKSDICAVMDPPNWTQESFALARY
Sbjct:    3 RKEEEEVAVGVPVYERNGIPPNALIGDPKGIPIQQTIYRDTPAPFNCPHCGHTSLTSVRSKISLAAFVGCLMPMMLGVCFLCPSMDCLWHKYHYCPDCHQKVADFEKSDICAVMDPPNWTQESFALARY 131          
BLAST of GT627181 vs. TrEMBL
Match: Q4U6G2_PEA (LITAF-domain-containing protein OS=Pisum sativum GN=LITAF PE=2 SV=1)

HSP 1 Score: 271.552 bits (693), Expect = 4.614e-71
Identity = 122/129 (94.57%), Postives = 126/129 (97.67%), Query Frame = -2
Query:  113 RNEEEEVAVGVPVYERNGIPPNALIGDPKGIPIQQTIFRDTPAPFNCPHCGHTALTTVRSKISLAAFVGCLMPMMIGVCFLCPSMDCLWHKYHYCPDCQQKVADFEKSDICAVMDPPNWTQESFALARY 499
            R EEEEVAVGVPVYERNGIPPNALIGDPKGIPIQQTI+RDTPAPFNCPHCGHT+LT+VRSKISLAAFVGCLMPMM+GVCFLCPSMDCLWHKYHYCPDC QKVADFEKSDICAVMDP NWTQESFALARY
Sbjct:    3 RKEEEEVAVGVPVYERNGIPPNALIGDPKGIPIQQTIYRDTPAPFNCPHCGHTSLTSVRSKISLAAFVGCLMPMMLGVCFLCPSMDCLWHKYHYCPDCHQKVADFEKSDICAVMDPRNWTQESFALARY 131          
BLAST of GT627181 vs. TrEMBL
Match: B7FMI0_MEDTR (Putative uncharacterized protein OS=Medicago truncatula PE=2 SV=1)

HSP 1 Score: 248.054 bits (632), Expect = 5.463e-64
Identity = 113/130 (86.92%), Postives = 121/130 (93.08%), Query Frame = -2
Query:  113 RNEEEEV-AVGVPVYERNGIPPNALIGDPKGIPIQQTIFRDTPAPFNCPHCGHTALTTVRSKISLAAFVGCLMPMMIGVCFLCPSMDCLWHKYHYCPDCQQKVADFEKSDICAVMDPPNWTQESFALARY 499
            R EE+EV AVGVPVYERNGIPPNA+IGDPKGIPIQQTI+RDTPAPFNCPHC +T+LTT+RSKISLAAFVGCLMPMM+GVCFLCPSMDCLWHKYHYCP C QKVADFEKSD   VMDPP+WTQESFALA Y
Sbjct:    3 RKEEKEVMAVGVPVYERNGIPPNAIIGDPKGIPIQQTIYRDTPAPFNCPHCANTSLTTIRSKISLAAFVGCLMPMMLGVCFLCPSMDCLWHKYHYCPQCHQKVADFEKSDPRIVMDPPSWTQESFALAGY 132          
BLAST of GT627181 vs. TrEMBL
Match: C6SYT8_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 230.72 bits (587), Expect = 9.025e-59
Identity = 105/134 (78.36%), Postives = 116/134 (86.57%), Query Frame = -2
Query:  119 EEEEVAVGVPV---------YERNGIPPNALIGDPKGIPIQQTIFRDTPAPFNCPHCGHTALTTVRSKISLAAFVGCLMPMMIGVCFLCPSMDCLWHKYHYCPDCQQKVADFEKSDICAVMDPPNWTQESFALA 493
            +EE+V VGVPV         Y+R  IPPNA+ GDPKGIPIQQTI+RDTPAPFNCP+C HTALTTVRSK SLAAFVGCLMPMM+GVCFLCPSMDCLWHKYHYCP CQ+KVADFE+SD C VMDPP+WTQESFAL+
Sbjct:    4 KEEKVVVGVPVPVYYGGENEYQRGIIPPNAVFGDPKGIPIQQTIYRDTPAPFNCPYCAHTALTTVRSKPSLAAFVGCLMPMMLGVCFLCPSMDCLWHKYHYCPKCQEKVADFEESDPCVVMDPPHWTQESFALS 137          
BLAST of GT627181 vs. TrEMBL
Match: C6SVS5_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 229.565 bits (584), Expect = 2.011e-58
Identity = 105/133 (78.95%), Postives = 115/133 (86.47%), Query Frame = -2
Query:  119 EEEVAVGVPV---------YERNGIPPNALIGDPKGIPIQQTIFRDTPAPFNCPHCGHTALTTVRSKISLAAFVGCLMPMMIGVCFLCPSMDCLWHKYHYCPDCQQKVADFEKSDICAVMDPPNWTQESFALA 490
            EE+VAVGVPV         Y+R  IPPN + GDPKGIPIQQTI+RDTPAPFNCP+CG TALTTVRSK SLAAFVGC +PMM+GVCFLCPSMDCLWHKYHYCP CQ+KVADFEKSD CAVMDPP+WTQESFAL+
Sbjct:    5 EEKVAVGVPVQLYYGGENEYQRGMIPPNTVFGDPKGIPIQQTIYRDTPAPFNCPYCGDTALTTVRSKPSLAAFVGCFVPMMLGVCFLCPSMDCLWHKYHYCPKCQEKVADFEKSDPCAVMDPPHWTQESFALS 137          
BLAST of GT627181 vs. TrEMBL
Match: A5ACU3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_005113 PE=4 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 1.262e-52
Identity = 92/134 (68.66%), Postives = 108/134 (80.60%), Query Frame = -2
Query:  122 EEEEVAVGVPV----------YERNGIPPNALIGDPKGIPIQQTIFRDTPAPFNCPHCGHTALTTVRSKISLAAFVGCLMPMMIGVCFLCPSMDCLWHKYHYCPDCQQKVADFEKSDICAVMDPPNWTQESFAL 493
            +EEE  +G+P           Y+   IPPNA +GDPKG+PIQQTIFRDTPAPFNC +CG + +TTV+SK SLAA VGC+MPMM+G+CFLCPSMDCLWHKYHYCP C++KVADFEKSD C VMDPP WTQ+SFAL
Sbjct:    4 KEEEPVMGIPYPAVYHPNQNPYQAGVIPPNAFVGDPKGVPIQQTIFRDTPAPFNCVYCGSSGVTTVKSKPSLAAVVGCMMPMMLGICFLCPSMDCLWHKYHYCPSCKEKVADFEKSDPCVVMDPPQWTQQSFAL 137          
BLAST of GT627181 vs. TrEMBL
Match: B9GMQ9_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_640083 PE=4 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 4.797e-52
Identity = 89/130 (68.46%), Postives = 110/130 (84.62%), Query Frame = -2
Query:  122 EEEEVAVGVPVY------ERNGIPPNALIGDPKGIPIQQTIFRDTPAPFNCPHCGHTALTTVRSKISLAAFVGCLMPMMIGVCFLCPSMDCLWHKYHYCPDCQQKVADFEKSDICAVMDPPNWTQESFAL 493
            +++E  +GVP Y      +   IPPNA++GDP+GIPIQQT++RDTPAPFNC +CG++ +T VRSK SLAA VGC+MP+M+G CFLCPSMDCLWHK+HYCP C++KVADFEKSD CAVMDPP+WTQESFAL
Sbjct:    3 QKDEPVIGVPYYAGQNPYQAGAIPPNAIVGDPRGIPIQQTMYRDTPAPFNCVYCGNSGVTVVRSKPSLAAVVGCMMPLMVGFCFLCPSMDCLWHKHHYCPSCKEKVADFEKSDPCAVMDPPHWTQESFAL 132          
BLAST of GT627181 vs. TrEMBL
Match: A9P9Z3_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_554722 PE=2 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 6.265e-52
Identity = 90/130 (69.23%), Postives = 110/130 (84.62%), Query Frame = -2
Query:  122 EEEEVAVGVPVY------ERNGIPPNALIGDPKGIPIQQTIFRDTPAPFNCPHCGHTALTTVRSKISLAAFVGCLMPMMIGVCFLCPSMDCLWHKYHYCPDCQQKVADFEKSDICAVMDPPNWTQESFAL 493
            ++++  VGVP Y      +   IPPNA++GDPKGIPIQQT++RDTPAPF+C +CG++ +T VRSK SLAA VGC+MP+M+G CFLCPSMDCLWHKYHYCP C++KVADFEKSD CAVMDPP+WTQESFAL
Sbjct:    3 QQDQPVVGVPYYAGQNPYQAGAIPPNAIVGDPKGIPIQQTMYRDTPAPFSCVYCGNSGVTFVRSKPSLAAVVGCMMPLMLGFCFLCPSMDCLWHKYHYCPSCKEKVADFEKSDPCAVMDPPHWTQESFAL 132          
BLAST of GT627181 vs. TrEMBL
Match: D7U609_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_146.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00000954001 PE=4 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 1.396e-51
Identity = 87/113 (76.99%), Postives = 100/113 (88.50%), Query Frame = -2
Query:  122 YERNGIPPNALIGDPKGIPIQQTIFRDTPAPFNCPHCGHTALTTVRSKISLAAFVGCLMPMMIGVCFLCPSMDCLWHKYHYCPDCQQKVADFEKSDICAVMDPPNWTQESFAL 460
            Y+   IPPNA +GDPKG+PIQQTIFRDTPAPFNC +CG + +TTV+SK SLAA VGC+MPMM+G+CFLCPSMDCLWHKYHYCP C++KVADFEKSD C VMDPP WTQ+SFAL
Sbjct:   16 YQAGVIPPNAFVGDPKGVPIQQTIFRDTPAPFNCVYCGSSGVTTVKSKPSLAAVVGCMMPMMLGICFLCPSMDCLWHKYHYCPSCKEKVADFEKSDPCVVMDPPQWTQQSFAL 128          
BLAST of GT627181 vs. TrEMBL
Match: B9RFX0_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1437770 PE=4 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 1.396e-51
Identity = 91/130 (70.00%), Postives = 107/130 (82.31%), Query Frame = -2
Query:  122 EEEEVAVGVPVY------ERNGIPPNALIGDPKGIPIQQTIFRDTPAPFNCPHCGHTALTTVRSKISLAAFVGCLMPMMIGVCFLCPSMDCLWHKYHYCPDCQQKVADFEKSDICAVMDPPNWTQESFAL 493
            +++E A+GVP Y      +   IPPNA+ GDPKGIPIQQT++RDTPAPFNC  CG++ LT VRSK SLAA VGC+MP M+G CFLCPSMDCLWHKYHYCP+C++KVADFEKSD C VMDPP WTQ+SFAL
Sbjct:    3 QKDEPAIGVPYYVGQNPYQAGAIPPNAVFGDPKGIPIQQTMYRDTPAPFNCVFCGNSGLTLVRSKPSLAAVVGCMMPFMLGFCFLCPSMDCLWHKYHYCPNCKEKVADFEKSDPCLVMDPPQWTQQSFAL 132          
BLAST of GT627181 vs. TAIR peptide
Match: AT5G13190.1 (| Symbols: | CONTAINS InterPro DOMAIN/s: LPS-induced tumor necrosis factor alpha factor (InterPro:IPR006629); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:4204987-4206205 REVERSE LENGTH=134)

HSP 1 Score: 181.03 bits (458), Expect = 5.534e-46
Identity = 81/130 (62.31%), Postives = 94/130 (72.31%), Query Frame = -2
Query:  122 EEEEVAVGVPVYERNG------IPPNALIGDPKGIPIQQTIFRDTPAPFNCPHCGHTALTTVRSKISLAAFVGCLMPMMIGVCFLCPSMDCLWHKYHYCPDCQQKVADFEKSDICAVMDPPNWTQESFAL 493
            +E    +GVP Y          +PPNA+ GDP G PIQQTI+RDTPAPFNC +CG+T LT +RSK  +AA V C+MP M+G CFLCPSMDCLW+K H+CP C  KVADFEKSD C VMDPP W Q SFAL
Sbjct:    3 KEGTTVIGVPYYAGQNPYQAGIVPPNAIYGDPLGAPIQQTIYRDTPAPFNCLYCGNTGLTNLRSKPGVAAVVACMMPFMLGFCFLCPSMDCLWNKQHHCPQCGNKVADFEKSDPCLVMDPPQWKQPSFAL 132          
BLAST of GT627181 vs. TAIR peptide
Match: AT4G24380.2 (| Symbols: | CONTAINS InterPro DOMAIN/s: Serine hydrolase (InterPro:IPR005645); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT5G65400.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr4:12612554-12613310 FORWARD LENGTH=171)

HSP 1 Score: 52.7582 bits (125), Expect = 2.273e-7
Identity = 23/48 (47.92%), Postives = 29/48 (60.42%), Query Frame = 3
Query:  573 KKMKILCLHGFRTSGSFIKKQISKWDPSIFSLFHMEFPDGKFPAGGKS 716
            +K + LCLHGFRTSG  +K Q+ KW  S+     + F D  FP  GKS
Sbjct:   10 RKPRFLCLHGFRTSGEIMKIQLHKWPKSVIDRLDLVFLDAPFPCQGKS 57          
BLAST of GT627181 vs. TAIR peptide
Match: AT4G24380.1 (| Symbols: | INVOLVED IN: 10-formyltetrahydrofolate biosynthetic process, folic acid and derivative biosynthetic process; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Serine hydrolase (InterPro:IPR005645); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT5G65400.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:12612554-12613586 FORWARD LENGTH=234)

HSP 1 Score: 52.7582 bits (125), Expect = 2.273e-7
Identity = 23/48 (47.92%), Postives = 29/48 (60.42%), Query Frame = 3
Query:  573 KKMKILCLHGFRTSGSFIKKQISKWDPSIFSLFHMEFPDGKFPAGGKS 716
            +K + LCLHGFRTSG  +K Q+ KW  S+     + F D  FP  GKS
Sbjct:   10 RKPRFLCLHGFRTSGEIMKIQLHKWPKSVIDRLDLVFLDAPFPCQGKS 57          
BLAST of GT627181 vs. TAIR peptide
Match: AT5G65400.1 (| Symbols: | alpha/beta-Hydrolases superfamily protein | chr5:26131448-26133062 FORWARD LENGTH=252)

HSP 1 Score: 52.373 bits (124), Expect = 2.968e-7
Identity = 24/48 (50.00%), Postives = 30/48 (62.50%), Query Frame = 3
Query:  573 KKMKILCLHGFRTSGSFIKKQISKWDPSIFSLFHMEFPDGKFPAGGKS 716
            K  +ILCLHGFRTSG  ++  I KW  +I     ++F D  FPA GKS
Sbjct:   28 KNPRILCLHGFRTSGRILQAGIGKWPDTILRDLDLDFLDAPFPATGKS 75          
The following BLAST results are available for this feature:
BLAST of GT627181 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Lens culinaris unigene v1 vs Trembl)
Total hits: 10
Match NameE-valueIdentityDescription
Q4U6G1_PEA4.173e-7295.35LITAF-domain-containing protein OS=Pisum sativum G... [more]
Q4U6G2_PEA4.614e-7194.57LITAF-domain-containing protein OS=Pisum sativum G... [more]
B7FMI0_MEDTR5.463e-6486.92Putative uncharacterized protein OS=Medicago trunc... [more]
C6SYT8_SOYBN9.025e-5978.36Putative uncharacterized protein OS=Glycine max PE... [more]
C6SVS5_SOYBN2.011e-5878.95Putative uncharacterized protein OS=Glycine max PE... [more]
A5ACU3_VITVI1.262e-5268.66Putative uncharacterized protein OS=Vitis vinifera... [more]
B9GMQ9_POPTR4.797e-5268.46Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]
A9P9Z3_POPTR6.265e-5269.23Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]
D7U609_VITVI1.396e-5176.99Whole genome shotgun sequence of line PN40024, sca... [more]
B9RFX0_RICCO1.396e-5170.00Putative uncharacterized protein OS=Ricinus commun... [more]
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BLAST of GT627181 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Lens culinaris unigene v1 vs TAIR 10 peptide)
Total hits: 4
Match NameE-valueIdentityDescription
AT5G13190.15.534e-4662.31| Symbols: | CONTAINS InterPro DOMAIN/s: LPS-indu... [more]
AT4G24380.22.273e-747.92| Symbols: | CONTAINS InterPro DOMAIN/s: Serine h... [more]
AT4G24380.12.273e-747.92| Symbols: | INVOLVED IN: 10-formyltetrahydrofola... [more]
AT5G65400.12.968e-750.00| Symbols: | alpha/beta-Hydrolases superfamily pr... [more]
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InterPro
Analysis Name: InterProScan analysis for Lens culinaris unigene v1
Date Performed: 2011-01-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSEGsegsegcoord: 5..16
score
NoneNo IPR availablePANTHERPTHR22778OVARIAN CANCER GENE-2 PROTEIN-RELATEDcoord: 35..85
score: 2
NoneNo IPR availableSEGsegsegcoord: 7..24
score
NoneNo IPR availableSEGsegsegcoord: 28..42
score
NoneNo IPR availablePANTHERPTHR23292LIPOPOLYSACCHARIDE-INDUCED TRANSCRIPTION FACTOR REGULATING TUMOR NECROSIS FACTOR ALPHAcoord: 33..107
score: 1.5
IPR005645Serine hydrolasePFAMPF03959FSH1coord: 38..81
score: 6.5
IPR006629LPS-induced tumor necrosis factor alpha factorPFAMPF10601zf-LITAF-likecoord: 38..106
score: 2.6
IPR006629LPS-induced tumor necrosis factor alpha factorSMARTSM00714no descriptioncoord: 42..107
score: 5.4

Properties
Property NameValue
Singlet in analysisLens culinaris unigene v1
Sequences
The following sequences are available for this feature:

EST sequence

>GT627181 ID=GT627181; Name=GT627181; organism=Lens culinaris; type=EST; length=716bp
GTACAACTGAGTAATTAAATTAAAGTAGCAAACAAGCATTTTCATCCATT
GTACACACATATAAGAGCAATGAAGAACAACATTTACAACTCATAATAGA
AATATCATACTAGTATCTCGCCAATGCAAAGCTCTCCTGCGTCCAGTTTG
GCGGATCCATCACAGCACAGATATCTGATTTCTCAAAATCAGCAACCTTT
TGTTGGCAATCAGGACAGTAGTGGTATTTATGCCAGAGGCAGTCCATTGA
AGGACAAAGAAAGCAAACTCCAATCATCATTGGCATCAAGCATCCAACAA
ATGCCGCCAGACTAATCTTCGATCTAACGGTGGTGAGGGCGGTGTGGCCA
CAGTGAGGGCAATTGAAGGGAGCAGGAGTGTCTCTGAAAATAGTCTGTTG
GATGGGAATACCTTTGGGATCTCCGATCAACGCGTTAGGTGGGATGCCGT
TTCTTTCATAAACGGGTACTCCAACCGCCACTTCTTCTTCTTCATTTCTT
TACAAAAAGTCCAACTTTGTGACCATTGAATTAAACATAGAAACAAAAAT
GGTAGGAGGAGGAGAAAATGAAAAGAAGATGAAAATACTGTGCCTCCATG
GATTCAGAACCAGTGGCAGTTTCATCAAAAAACAAATCAGCAAATGGGAT
CCTTCTATTTTCTCTCTATTTCACATGGAATTCCCGGATGGAAAATTTCC
TGCTGGAGGCAAATCT
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Annotated Terms
The following terms have been associated with this EST:
Vocabulary: INTERPRO
TermDefinition
IPR005645FSH_dom
IPR006629LITAF