GT624404

EST Overview
NameGT624404
Unique NameGT624404
TypeEST
OrganismLens culinaris (lentil)
Sequence length709
Unigenes
This EST is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Lens culinaris unigene v1Lens culinaris unigene v1EST
Libraries
Library NameType
LIBEST_025390 LCUSE1NGcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
Lens culinaris unigene v12010-12-27
Homology Analysis: Lens culinaris unigene v1 vs Trembl2010-12-28
Homology Analysis: Lens culinaris unigene v1 vs TAIR 10 peptide2011-02-03
InterProScan analysis for Lens culinaris unigene v12011-01-06
Homology
BLAST of GT624404 vs. TrEMBL
Match: D7TUH8_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_17.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00015912001 PE=4 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 2.000e-10
Identity = 33/51 (64.71%), Postives = 41/51 (80.39%), Query Frame = 2
Query:    2 TTIQQLLYQLEESIRMGHMVDHCDKLKKMLHGSLLNHLKILKVDSDDTISA 154
            TTI++L  QLEE I  G+MVD CDKLKK+LH +LL HL +LKVDSDD +S+
Sbjct: 1451 TTIERLWCQLEEMISSGNMVDQCDKLKKLLHEALLRHLNLLKVDSDDALSS 1501          
BLAST of GT624404 vs. TrEMBL
Match: Q9C811_ARATH (Putative uncharacterized protein F10C21.8 OS=Arabidopsis thaliana GN=At1g33410 PE=1 SV=1)

HSP 1 Score: 64.3142 bits (155), Expect = 1.097e-8
Identity = 27/51 (52.94%), Postives = 42/51 (82.35%), Query Frame = 2
Query:    2 TTIQQLLYQLEESIRMGHMVDHCDKLKKMLHGSLLNHLKILKVDSDDTISA 154
            TT+++L ++LE+++  G MV+ C KLK+ LH +LLNHLK+LKVDS+D +S+
Sbjct: 1406 TTVERLWWELEKTMNSGRMVEQCHKLKEQLHHALLNHLKLLKVDSNDAVSS 1456          
BLAST of GT624404 vs. TrEMBL
Match: Q6YXW7_ORYSJ (Putative uncharacterized protein OSJNBa0064G16.1 OS=Oryza sativa subsp. japonica GN=OSJNBa0064G16.1 PE=4 SV=1)

HSP 1 Score: 63.5438 bits (153), Expect = 1.872e-8
Identity = 29/51 (56.86%), Postives = 39/51 (76.47%), Query Frame = 2
Query:    2 TTIQQLLYQLEESIRMGHMVDHCDKLKKMLHGSLLNHLKILKVDSDDTISA 154
            T I++L  QLEE    GH VD CD+LKK+LHGSL++HL+ + VDSDD +S+
Sbjct:  148 TAIERLWCQLEEMQNAGHSVDQCDRLKKLLHGSLMSHLQQVVVDSDDVLSS 198          
BLAST of GT624404 vs. TrEMBL
Match: Q6YWF9_ORYSJ (Nucleoporin-like protein OS=Oryza sativa subsp. japonica GN=OSJNBb0018G11.20 PE=4 SV=1)

HSP 1 Score: 63.5438 bits (153), Expect = 1.872e-8
Identity = 29/51 (56.86%), Postives = 39/51 (76.47%), Query Frame = 2
Query:    2 TTIQQLLYQLEESIRMGHMVDHCDKLKKMLHGSLLNHLKILKVDSDDTISA 154
            T I++L  QLEE    GH VD CD+LKK+LHGSL++HL+ + VDSDD +S+
Sbjct: 1326 TAIERLWCQLEEMQNAGHSVDQCDRLKKLLHGSLISHLQQVVVDSDDVLSS 1376          
BLAST of GT624404 vs. TrEMBL
Match: D7KII4_ARALY (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_473514 PE=4 SV=1)

HSP 1 Score: 63.5438 bits (153), Expect = 1.872e-8
Identity = 26/51 (50.98%), Postives = 42/51 (82.35%), Query Frame = 2
Query:    2 TTIQQLLYQLEESIRMGHMVDHCDKLKKMLHGSLLNHLKILKVDSDDTISA 154
            TT+++L ++LE+++  G M++ C KLK+ LH +LLNHLK+LKVDS+D +S+
Sbjct: 1404 TTVERLWWELEKTMNSGRMLEQCQKLKEQLHQALLNHLKLLKVDSNDAVSS 1454          
BLAST of GT624404 vs. TrEMBL
Match: A2X0T0_ORYSI (Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_05813 PE=4 SV=1)

HSP 1 Score: 63.5438 bits (153), Expect = 1.872e-8
Identity = 29/51 (56.86%), Postives = 39/51 (76.47%), Query Frame = 2
Query:    2 TTIQQLLYQLEESIRMGHMVDHCDKLKKMLHGSLLNHLKILKVDSDDTISA 154
            T I++L  QLEE    GH VD CD+LKK+LHGSL++HL+ + VDSDD +S+
Sbjct: 1326 TAIERLWCQLEEMQNAGHSVDQCDRLKKLLHGSLISHLQQVVVDSDDVLSS 1376          
BLAST of GT624404 vs. TrEMBL
Match: C0PNX3_MAIZE (Putative uncharacterized protein OS=Zea mays PE=2 SV=1)

HSP 1 Score: 61.2326 bits (147), Expect = 9.290e-8
Identity = 27/51 (52.94%), Postives = 39/51 (76.47%), Query Frame = 2
Query:    2 TTIQQLLYQLEESIRMGHMVDHCDKLKKMLHGSLLNHLKILKVDSDDTISA 154
            T +++L  QL E  R GH VD CD+LKK+LHG+L++HL+ + VDSDD +S+
Sbjct:  250 TAVERLWCQLGEMQRAGHSVDQCDRLKKLLHGALMSHLQQVVVDSDDVLSS 300          
BLAST of GT624404 vs. TrEMBL
Match: C5XUK4_SORBI (Putative uncharacterized protein Sb04g003290 OS=Sorghum bicolor GN=Sb04g003290 PE=4 SV=1)

HSP 1 Score: 58.5362 bits (140), Expect = 6.022e-7
Identity = 26/51 (50.98%), Postives = 38/51 (74.51%), Query Frame = 2
Query:    2 TTIQQLLYQLEESIRMGHMVDHCDKLKKMLHGSLLNHLKILKVDSDDTISA 154
            T +++L  QL E  R GH VD CD+LKK+LHG+L++HL+ + VDS D +S+
Sbjct:  542 TAVERLWCQLGEMQRAGHSVDQCDRLKKLLHGALMSHLQQVVVDSGDVLSS 592          
BLAST of GT624404 vs. TAIR peptide
Match: AT1G33410.2 (| Symbols: SAR1 | SUPPRESSOR OF AUXIN RESISTANCE1 | chr1:12109769-12118828 REVERSE LENGTH=1504)

HSP 1 Score: 64.3142 bits (155), Expect = 7.441e-11
Identity = 27/51 (52.94%), Postives = 42/51 (82.35%), Query Frame = 2
Query:    2 TTIQQLLYQLEESIRMGHMVDHCDKLKKMLHGSLLNHLKILKVDSDDTISA 154
            TT+++L ++LE+++  G MV+ C KLK+ LH +LLNHLK+LKVDS+D +S+
Sbjct: 1451 TTVERLWWELEKTMNSGRMVEQCHKLKEQLHHALLNHLKLLKVDSNDAVSS 1501          
BLAST of GT624404 vs. TAIR peptide
Match: AT1G33410.1 (| Symbols: SAR1, NUP160, ATNUP160 | SUPPRESSOR OF AUXIN RESISTANCE1 | chr1:12109769-12118828 REVERSE LENGTH=1504)

HSP 1 Score: 64.3142 bits (155), Expect = 7.441e-11
Identity = 27/51 (52.94%), Postives = 42/51 (82.35%), Query Frame = 2
Query:    2 TTIQQLLYQLEESIRMGHMVDHCDKLKKMLHGSLLNHLKILKVDSDDTISA 154
            TT+++L ++LE+++  G MV+ C KLK+ LH +LLNHLK+LKVDS+D +S+
Sbjct: 1451 TTVERLWWELEKTMNSGRMVEQCHKLKEQLHHALLNHLKLLKVDSNDAVSS 1501          
The following BLAST results are available for this feature:
BLAST of GT624404 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Lens culinaris unigene v1 vs Trembl)
Total hits: 8
Match NameE-valueIdentityDescription
D7TUH8_VITVI2.000e-1064.71Whole genome shotgun sequence of line PN40024, sca... [more]
Q9C811_ARATH1.097e-852.94Putative uncharacterized protein F10C21.8 OS=Arabi... [more]
Q6YXW7_ORYSJ1.872e-856.86Putative uncharacterized protein OSJNBa0064G16.1 O... [more]
Q6YWF9_ORYSJ1.872e-856.86Nucleoporin-like protein OS=Oryza sativa subsp. ja... [more]
D7KII4_ARALY1.872e-850.98Putative uncharacterized protein OS=Arabidopsis ly... [more]
A2X0T0_ORYSI1.872e-856.86Putative uncharacterized protein OS=Oryza sativa s... [more]
C0PNX3_MAIZE9.290e-852.94Putative uncharacterized protein OS=Zea mays PE=2 ... [more]
C5XUK4_SORBI6.022e-750.98Putative uncharacterized protein Sb04g003290 OS=So... [more]
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BLAST of GT624404 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Lens culinaris unigene v1 vs TAIR 10 peptide)
Total hits: 2
Match NameE-valueIdentityDescription
AT1G33410.27.441e-1152.94| Symbols: SAR1 | SUPPRESSOR OF AUXIN RESISTANCE1 ... [more]
AT1G33410.17.441e-1152.94| Symbols: SAR1, NUP160, ATNUP160 | SUPPRESSOR OF ... [more]
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InterPro
Analysis Name: InterProScan analysis for Lens culinaris unigene v1
Date Performed: 2011-01-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSEGsegsegcoord: 39..57
score

Properties
Property NameValue
Singlet in analysisLens culinaris unigene v1
Sequences
The following sequences are available for this feature:

EST sequence

>GT624404 ID=GT624404; Name=GT624404; organism=Lens culinaris; type=EST; length=709bp
CACAACTATTCAGCAGCTACTATACCAACTTGAAGAATCAATCAGAATGG
GTCACATGGTAGATCACTGTGACAAGCTCAAAAAGATGTTACATGGTTCT
TTGCTGAATCATCTGAAGATATTGAAGGTTGACTCAGATGATACAATATC
TGCAACTACTTGAACTCTACTTGAGGTAGTAAAGGTACAAGTGTATTCAC
ATTGCTCTTCATTACTGGATGTATTTAACAGTATAATTTCCGGTAAATAG
CGCAAATTATTGGATGGAAAATACAAGGCAGTGGAGGATTTTTAATTTTG
AAAAATGTTGGTAAATTAGTGGGTTATGTTAGGAATTGAACCCTGACCTT
CTGGTTAGAACTTCTCCAACCGATCAGCCTGCTTATGACACAATAGAGGA
TATTTTAATTAATCATTCTCTTACCACAAGAGCAACAACCAATGATGGCT
TCCACACCATCTTGTCCGGAACCAAAAAAAGGTACTACTAAGTGTAATAT
ACGTGAATAATGGTGTAAAATTTGTATATGCTTATAGAAATGAATATTTG
TTTTATAAAAATGTCAGCATTTTTCTGTATGGGTGCTGCTAGGCTTGAGT
GGAAAAATTGACAGGAAATTTTGTATAGAATGGGAATGTTTTTCCCTGAA
GTGACGGAAAGTATGATGGCATATATTTAAGTGAATGACATGGTTTTTTT
TTGGGTGAT
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