GT623842

EST Overview
NameGT623842
Unique NameGT623842
TypeEST
OrganismLens culinaris (lentil)
Sequence length745
Unigenes
This EST is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Lens culinaris unigene v1Lens culinaris unigene v1EST
Libraries
Library NameType
LIBEST_025390 LCUSE1NGcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
Lens culinaris unigene v12010-12-27
Homology Analysis: Lens culinaris unigene v1 vs Trembl2010-12-28
KEGG analysis for Lens culinaris unigene v12011-01-05
Homology Analysis: Lens culinaris unigene v1 vs TAIR 10 peptide2011-02-03
InterProScan analysis for Lens culinaris unigene v12011-01-06
Homology
BLAST of GT623842 vs. TrEMBL
Match: B7FMI2_MEDTR (Putative uncharacterized protein OS=Medicago truncatula PE=2 SV=1)

HSP 1 Score: 234.958 bits (598), Expect = 5.168e-60
Identity = 112/122 (91.80%), Postives = 118/122 (96.72%), Query Frame = 1
Query:  106 MPPYDCMLLFKPHVKKEALIGLVARIGKHICKRNGVVTEVKSFGTIQLGYGVKKLDGRFFQGQLMQVSMMATPEINKELHYLNKEDKLLRWLLVKQRDTKFGLEFMGDEGRLEPSRFSQINK 471
            MPPYDCMLLFKP+VKKEALI LVARIGKH+CKRNGVVTEVKSFGT+QLGYGVKK DGRF+QGQ+MQVSMMATPEINKELHYLNKEDKLLRWLLVKQRDTKFGLEFM DEG LEPS+FSQINK
Sbjct:    1 MPPYDCMLLFKPNVKKEALISLVARIGKHVCKRNGVVTEVKSFGTVQLGYGVKKRDGRFYQGQMMQVSMMATPEINKELHYLNKEDKLLRWLLVKQRDTKFGLEFMSDEGGLEPSKFSQINK 122          
BLAST of GT623842 vs. TrEMBL
Match: C6SWD1_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 3.966e-52
Identity = 94/123 (76.42%), Postives = 111/123 (90.24%), Query Frame = 1
Query:  106 MPPYDCMLLFKPHVKKEALIGLVARIGKHICKRNGVVTEVKSFGTIQLGYGVKKLDGRFFQGQLMQVSMMATPEINKELHYLNKEDKLLRWLLVKQRDTKFGLEFMGDEGRLEPSRFSQINKH 474
            MPPYDCM LFKPH++KEA++ LV R+GKH+C+RNGVV ++KS G +QLGYGVKKLDGR++QG LMQ+SMMATPEINKELHYLNKED+LLRWLLVKQR+TKFGL+  GDEGR E S+FSQI KH
Sbjct:    1 MPPYDCMFLFKPHIRKEAVMDLVVRVGKHVCRRNGVVIDIKSLGRVQLGYGVKKLDGRYYQGLLMQMSMMATPEINKELHYLNKEDRLLRWLLVKQRNTKFGLDSYGDEGRYELSKFSQIGKH 123          
BLAST of GT623842 vs. TrEMBL
Match: C6T213_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 2.571e-51
Identity = 93/123 (75.61%), Postives = 110/123 (89.43%), Query Frame = 1
Query:  106 MPPYDCMLLFKPHVKKEALIGLVARIGKHICKRNGVVTEVKSFGTIQLGYGVKKLDGRFFQGQLMQVSMMATPEINKELHYLNKEDKLLRWLLVKQRDTKFGLEFMGDEGRLEPSRFSQINKH 474
            MPPYDCM LFKPH++KEA++ LV R+GKH+C+RNGVVT++KS G +QLGYGVKKLDGR++QG LMQ+SMMATPEINKELHYLNKED+LLRWLLVKQR+TKFGL+  GD GR E S+ SQI KH
Sbjct:    1 MPPYDCMFLFKPHIRKEAVMDLVVRVGKHVCRRNGVVTDIKSLGKVQLGYGVKKLDGRYYQGLLMQMSMMATPEINKELHYLNKEDRLLRWLLVKQRNTKFGLDSYGDGGRYELSKLSQIGKH 123          
BLAST of GT623842 vs. TrEMBL
Match: B9IMJ0_POPTR (Predicted protein (Fragment) OS=Populus trichocarpa GN=POPTRDRAFT_262842 PE=4 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 2.108e-45
Identity = 84/109 (77.06%), Postives = 99/109 (90.83%), Query Frame = 1
Query:  106 MPPYDCMLLFKPHVKKEALIGLVARIGKHICKRNGVVTEVKSFGTIQLGYGVKKLDGRFFQGQLMQVSMMATPEINKELHYLNKEDKLLRWLLVKQRDTKFGLEFMGDE 432
            MP YDCML+ KPHV+KEAL+ LVAR+GKH+  RNGVVT++KSFGT+QLGYG+KKLDGR +QGQLMQ++MMATP INKELHYLNKED+LLRWLLVK RD KFGLEFM ++
Sbjct:    1 MPLYDCMLMLKPHVRKEALMDLVARVGKHVYSRNGVVTDIKSFGTVQLGYGIKKLDGRHYQGQLMQITMMATPNINKELHYLNKEDRLLRWLLVKHRDIKFGLEFMDED 109          
BLAST of GT623842 vs. TrEMBL
Match: B9SC18_RICCO (Structural constituent of ribosome, putative OS=Ricinus communis GN=RCOM_0701550 PE=4 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 3.976e-44
Identity = 85/123 (69.11%), Postives = 104/123 (84.55%), Query Frame = 1
Query:  106 MPPYDCMLLFKPHVKKEALIGLVARIGKHICKRNGVVTEVKSFGTIQLGYGVKKLDGRFFQGQLMQVSMMATPEINKELHYLNKEDKLLRWLLVKQRDTKFGLEFM------GDEGRLEPSRF 456
            MP YDCMLL KPH+ KEA+I LVAR+GKH+  RNGV+T++KSFGTIQLGYG+KK + R+FQGQLMQ++MMATP INKELHYLNKED+LLRWLLVK RDTK+GL+FM      G+  +L PS++
Sbjct:    1 MPLYDCMLLLKPHIHKEAVIDLVARVGKHVQSRNGVLTDMKSFGTIQLGYGIKKRENRYFQGQLMQMTMMATPNINKELHYLNKEDRLLRWLLVKHRDTKYGLDFMDENDGKGELNKLSPSKY 123          
BLAST of GT623842 vs. TrEMBL
Match: D7T525_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_149.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00001041001 PE=4 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 1.563e-40
Identity = 79/112 (70.54%), Postives = 99/112 (88.39%), Query Frame = 1
Query:  124 MLLFKPHVKKEALIGLVARIGKHICKRNGVVTEVKSFGTIQLGYGVKKLDGRFFQGQLMQVSMMATPEINKELHYLNKEDKLLRWLLVKQRDTKFGLEFMG-DEGRLEPSRF 456
            MLL KPHV KE+L+ LVAR+GKH+ +RNGV+T++KSFG ++LGYG+KKLDGR++QGQLMQ+SMMATP  NKELHYLNKED+LLRWLLVK R+TK+GLEF+  D+ R E S+F
Sbjct:    1 MLLLKPHVNKESLMDLVARVGKHVYRRNGVLTDIKSFGIVRLGYGIKKLDGRYYQGQLMQMSMMATPNFNKELHYLNKEDRLLRWLLVKHRNTKYGLEFLNEDDVRSELSKF 112          
BLAST of GT623842 vs. TrEMBL
Match: D7L947_ARALY (Ribosomal protein S6 family protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_898249 PE=4 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 5.941e-40
Identity = 79/118 (66.95%), Postives = 96/118 (81.36%), Query Frame = 1
Query:  106 MPPYDCMLLFKPHVKKEALIGLVARIGKHICKRNGVVTEVKSFGTIQLGYGVKKLDGRFFQGQLMQVSMMATPEINKELHYLNKEDKLLRWLLVKQRDTKFGLEFMGDEGRLEPSRFS 459
            MP YDCMLLFKP ++KE LI LVARIGKH+  RNGV+TE+KSFG ++LGYG++KLDGR +QGQLMQ++MM TP +NKELHYLNKEDKLLRWLLVK RD K G +   +    EP+R +
Sbjct:    1 MPLYDCMLLFKPIIRKEGLIDLVARIGKHVYSRNGVLTEIKSFGKVELGYGIRKLDGRHYQGQLMQITMMTTPNMNKELHYLNKEDKLLRWLLVKHRDIKIG-QLEKEVSLTEPNRLT 117          
BLAST of GT623842 vs. TrEMBL
Match: Q9LSA1_ARATH (Genomic DNA, chromosome 3, P1 clone: MVE11 OS=Arabidopsis thaliana GN=At3g18760/MVE11_12 PE=2 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 1.013e-39
Identity = 76/102 (74.51%), Postives = 89/102 (87.25%), Query Frame = 1
Query:  106 MPPYDCMLLFKPHVKKEALIGLVARIGKHICKRNGVVTEVKSFGTIQLGYGVKKLDGRFFQGQLMQVSMMATPEINKELHYLNKEDKLLRWLLVKQRDTKFG 411
            MP YDCMLLFKP ++KE LI LVARIGKH+  RNGV+TE+KSFG ++LGYG++KLDGR +QGQLMQ++MM TP +NKELHYLNKEDKLLRWLLVK RD K G
Sbjct:    1 MPLYDCMLLFKPIIRKEGLIDLVARIGKHVYSRNGVLTEIKSFGKVELGYGIRKLDGRHYQGQLMQITMMTTPNMNKELHYLNKEDKLLRWLLVKHRDIKIG 102          
BLAST of GT623842 vs. TrEMBL
Match: C5XKE8_SORBI (Putative uncharacterized protein Sb03g001540 OS=Sorghum bicolor GN=Sb03g001540 PE=4 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 3.604e-37
Identity = 76/120 (63.33%), Postives = 93/120 (77.50%), Query Frame = 1
Query:  106 MPPYDCMLLFKPHVKKEALIGLVARIGKHICKRNGVVTEVKSFGTIQLGYGVKKLDGRFFQGQLMQVSMMATPEINKELHYLNKEDKLLRWLLVKQRDTKFGLEFMG-DEGRLEPSRFSQ 462
            MP YDCMLL KP V +E +  LV R+ +  C+RNGVVT+VKSFG + LGYG+KKLDGR FQGQLMQ++MM  P   +ELHYLNKED+LLRWL+VK RD  +GLEF+  D+GR E S +SQ
Sbjct:    1 MPLYDCMLLVKPTVTREVVADLVTRVARRACQRNGVVTDVKSFGKVNLGYGIKKLDGRHFQGQLMQMTMMVPPSFPQELHYLNKEDRLLRWLVVKHRDAVYGLEFINEDDGRNELSGYSQ 120          
BLAST of GT623842 vs. TrEMBL
Match: D5ADT1_PICSI (Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 3.985e-36
Identity = 70/108 (64.81%), Postives = 90/108 (83.33%), Query Frame = 1
Query:  106 MPPYDCMLLFKPHVKKEALIGLVARIGKHICKRNGVVTEVKSFGTIQLGYGVKKLDGRFFQGQLMQVSMMATPEINKELHYLNKEDKLLRWLLVKQRDTKFGLEFMGD 429
            MP YDCMLL KP V++ A+I LVAR+G+ +   NGVVT++KSFG + LGYG+KKLDGRF+QGQ+MQ++MM TP+  KEL YLNK+D+LLRWLLVK RDT +GLEF+ +
Sbjct:    1 MPLYDCMLLLKPKVERTAIIELVARLGRRVHSLNGVVTDIKSFGKVYLGYGIKKLDGRFYQGQMMQMTMMVTPKFPKELEYLNKDDRLLRWLLVKYRDTSYGLEFVNE 108          
BLAST of GT623842 vs. TAIR peptide
Match: AT3G18760.1 (| Symbols: | Translation elongation factor EF1B/ribosomal protein S6 family protein | chr3:6457930-6459558 REVERSE LENGTH=139)

HSP 1 Score: 167.548 bits (423), Expect = 6.714e-42
Identity = 76/102 (74.51%), Postives = 89/102 (87.25%), Query Frame = 1
Query:  106 MPPYDCMLLFKPHVKKEALIGLVARIGKHICKRNGVVTEVKSFGTIQLGYGVKKLDGRFFQGQLMQVSMMATPEINKELHYLNKEDKLLRWLLVKQRDTKFG 411
            MP YDCMLLFKP ++KE LI LVARIGKH+  RNGV+TE+KSFG ++LGYG++KLDGR +QGQLMQ++MM TP +NKELHYLNKEDKLLRWLLVK RD K G
Sbjct:    1 MPLYDCMLLFKPIIRKEGLIDLVARIGKHVYSRNGVLTEIKSFGKVELGYGIRKLDGRHYQGQLMQITMMTTPNMNKELHYLNKEDKLLRWLLVKHRDIKIG 102          
BLAST of GT623842 vs. TAIR peptide
Match: AT3G18760.2 (| Symbols: | Translation elongation factor EF1B/ribosomal protein S6 family protein | chr3:6457930-6459558 REVERSE LENGTH=134)

HSP 1 Score: 151.754 bits (382), Expect = 3.812e-37
Identity = 71/102 (69.61%), Postives = 84/102 (82.35%), Query Frame = 1
Query:  106 MPPYDCMLLFKPHVKKEALIGLVARIGKHICKRNGVVTEVKSFGTIQLGYGVKKLDGRFFQGQLMQVSMMATPEINKELHYLNKEDKLLRWLLVKQRDTKFG 411
            MP YDCMLLFKP ++KE LI LVARIGKH+  RNGV+TE+KSFG ++LGYG++KLDGR +     Q++MM TP +NKELHYLNKEDKLLRWLLVK RD K G
Sbjct:    1 MPLYDCMLLFKPIIRKEGLIDLVARIGKHVYSRNGVLTEIKSFGKVELGYGIRKLDGRHY-----QITMMTTPNMNKELHYLNKEDKLLRWLLVKHRDIKIG 97          
The following BLAST results are available for this feature:
BLAST of GT623842 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Lens culinaris unigene v1 vs Trembl)
Total hits: 10
Match NameE-valueIdentityDescription
B7FMI2_MEDTR5.168e-6091.80Putative uncharacterized protein OS=Medicago trunc... [more]
C6SWD1_SOYBN3.966e-5276.42Putative uncharacterized protein OS=Glycine max PE... [more]
C6T213_SOYBN2.571e-5175.61Putative uncharacterized protein OS=Glycine max PE... [more]
B9IMJ0_POPTR2.108e-4577.06Predicted protein (Fragment) OS=Populus trichocarp... [more]
B9SC18_RICCO3.976e-4469.11Structural constituent of ribosome, putative OS=Ri... [more]
D7T525_VITVI1.563e-4070.54Whole genome shotgun sequence of line PN40024, sca... [more]
D7L947_ARALY5.941e-4066.95Ribosomal protein S6 family protein OS=Arabidopsis... [more]
Q9LSA1_ARATH1.013e-3974.51Genomic DNA, chromosome 3, P1 clone: MVE11 OS=Arab... [more]
C5XKE8_SORBI3.604e-3763.33Putative uncharacterized protein Sb03g001540 OS=So... [more]
D5ADT1_PICSI3.985e-3664.81Putative uncharacterized protein OS=Picea sitchens... [more]
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BLAST of GT623842 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Lens culinaris unigene v1 vs TAIR 10 peptide)
Total hits: 2
Match NameE-valueIdentityDescription
AT3G18760.16.714e-4274.51| Symbols: | Translation elongation factor EF1B/... [more]
AT3G18760.23.812e-3769.61| Symbols: | Translation elongation factor EF1B/... [more]
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InterPro
Analysis Name: InterProScan analysis for Lens culinaris unigene v1
Date Performed: 2011-01-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000529Ribosomal protein S6PFAMPF01250Ribosomal_S6coord: 11..103
score: 1.8
IPR000529Ribosomal protein S6SUPERFAMILY54995Ribosomal protein S6coord: 8..115
score: 3.2
IPR014717Translation elongation factor EF1B/ribosomal protein S6GENE3D3.30.70.60no descriptioncoord: 8..105
score: 9.6
NoneNo IPR availableSEGsegsegcoord: 131..149
score
NoneNo IPR availableSEGsegsegcoord: 12..21
score

Properties
Property NameValue
Singlet in analysisLens culinaris unigene v1
Sequences
The following sequences are available for this feature:

EST sequence

>GT623842 ID=GT623842; Name=GT623842; organism=Lens culinaris; type=EST; length=745bp
CTCCCTCTAGCGGCCGCGCGTTGTCGCCGTCGTCGAGTCTCCTCCTCTTC
TTCATCTATCTCACTGACGCTTCCCAACCCGTAGGTAGGAGGAAGAAGCC
AAAAAATGCCTCCTTATGATTGCATGCTTCTATTCAAACCACATGTTAAA
AAAGAAGCCCTAATTGGTTTAGTTGCAAGGATTGGAAAACACATTTGTAA
AAGAAATGGGGTTGTCACTGAGGTTAAGAGTTTCGGAACTATTCAGTTGG
GCTATGGTGTCAAAAAGCTTGATGGAAGGTTTTTTCAGGGCCAACTGATG
CAAGTGAGCATGATGGCTACACCGGAAATCAACAAAGAGCTGCATTACCT
AAACAAGGAAGACAAGCTACTGCGTTGGCTTCTGGTTAAGCAGCGTGACA
CAAAGTTTGGGCTTGAGTTCATGGGAGATGAAGGTCGATTAGAGCCAAGC
AGATTCTCTCAAATAAATAAACATGATGACGACGATGATGAGGATGAAGA
CGATGAAGAATATGAAATCAACGAAGAAGAAAACAGAGTGAACTAAAATA
TGGTTGTATTTTGTTTGTTTCGATTAGGAGAAAGATAAAATCGTCGGGTG
CCAAACATATGCTTTTTAGCAGTGCTACATAACAATCAGACATGATCAAT
GGCTTTGAAGATTTTGATTAGTAGAAACAGCATCTTGTCTCTTGAATTTA
GACAATAATTGTTTGTAATTTGGTGAAATAATTTATTTACAAACG
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Annotated Terms
The following terms have been associated with this EST:
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
GO:0019843rRNA binding
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: INTERPRO
TermDefinition
IPR000529Ribosomal_S6
IPR014717Transl_elong_EF1B/ribosomal_S6