GT624380
EST Overview
Unigenes
This EST is part of the following unigenes:
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of GT624380 vs. TrEMBL
Match: A9PCR1_POPTR (Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1) HSP 1 Score: 399.053 bits (1024), Expect = 2.419e-109 Identity = 176/223 (78.92%), Postives = 198/223 (88.79%), Query Frame = 3 Query: 141 SPCKTSCGTIPINYPFALEDGCGSPQFRQMFNCTTTDLFFQTPSGSYKVQSIDYTKKTMTLYDPSMSTCSILQPHHDFIMTDIQSAIIPPSQDTVFVLLNCSIDSPVLNHYKYLCFNFEGHTCDELYGGCNAFRVFHLLTNSSPPCCFTSYNTVKFMSMNILDCTHYTSVFNSDKLRGVGPLDWVYGIKLSFSVPDIGCESCKQSGGTCGFDTDTQGLLCLCS 809 +PC+TSCG+I INYPF ++DGCG+PQFR M NC+T DLFF TPSG YKVQ IDY KKTMT+YDP+MSTCSILQPHHDFIMTDIQS IPP+ DTVF LLNCSIDSPVLNHYK LCF+F GH+CDELYG CNAFRVFHLLTNSSPPCCFT Y+TVKFM MNILDCTHYT+V N+D LRG+GPLDWVYGIKLSF+VP+ GCE C QSGGTCG+DT+T+ + CLCS Sbjct: 29 TPCRTSCGSIAINYPFGIDDGCGAPQFRSMLNCST-DLFFLTPSGGYKVQHIDYDKKTMTIYDPAMSTCSILQPHHDFIMTDIQSVTIPPTPDTVFALLNCSIDSPVLNHYKNLCFDFSGHSCDELYGACNAFRVFHLLTNSSPPCCFTGYDTVKFMRMNILDCTHYTTVINTDNLRGIGPLDWVYGIKLSFTVPETGCERCSQSGGTCGYDTETEVMTCLCS 250
BLAST of GT624380 vs. TrEMBL
Match: B9HII5_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_564336 PE=4 SV=1) HSP 1 Score: 394.43 bits (1012), Expect = 5.959e-108 Identity = 174/223 (78.03%), Postives = 197/223 (88.34%), Query Frame = 3 Query: 141 SPCKTSCGTIPINYPFALEDGCGSPQFRQMFNCTTTDLFFQTPSGSYKVQSIDYTKKTMTLYDPSMSTCSILQPHHDFIMTDIQSAIIPPSQDTVFVLLNCSIDSPVLNHYKYLCFNFEGHTCDELYGGCNAFRVFHLLTNSSPPCCFTSYNTVKFMSMNILDCTHYTSVFNSDKLRGVGPLDWVYGIKLSFSVPDIGCESCKQSGGTCGFDTDTQGLLCLCS 809 +PC+TSCG+I INYPF ++DGCG+PQFR M NC+T DLFF TPSG YKVQ IDY KKTMT+YDP+MSTCSILQPHHDFIMTDIQS I P+ DTVF LLNCSIDSPVLNHYK LCF+F GH+CDELYG CNAFRVFHLLTNSSPPCCFT Y+TVKFMSMNILDCTHYT+V N+D L G+ P DWVYGIKLS+SVP+ GCE C QSGGTCG+DT+T+G++CLCS Sbjct: 26 TPCRTSCGSIAINYPFGIDDGCGAPQFRHMLNCST-DLFFLTPSGDYKVQHIDYDKKTMTIYDPAMSTCSILQPHHDFIMTDIQSVTISPTPDTVFALLNCSIDSPVLNHYKNLCFSFSGHSCDELYGACNAFRVFHLLTNSSPPCCFTGYDTVKFMSMNILDCTHYTTVINTDSLMGIVPSDWVYGIKLSYSVPETGCERCSQSGGTCGYDTETEGMMCLCS 247
BLAST of GT624380 vs. TrEMBL
Match: B9RZX9_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1002880 PE=4 SV=1) HSP 1 Score: 393.66 bits (1010), Expect = 1.016e-107 Identity = 172/221 (77.83%), Postives = 198/221 (89.59%), Query Frame = 3 Query: 147 CKTSCGTIPINYPFALEDGCGSPQFRQMFNCTTTDLFFQTPSGSYKVQSIDYTKKTMTLYDPSMSTCSILQPHHDFIMTDIQSAIIPPSQDTVFVLLNCSIDSPVLNHYKYLCFNFEGHTCDELYGGCNAFRVFHLLTNSSPPCCFTSYNTVKFMSMNILDCTHYTSVFNSDKLRGVGPLDWVYGIKLSFSVPDIGCESCKQSGGTCGFDTDTQGLLCLCS 809 C+TSCG + I YPF ++DGCG+PQFR MFNC+ DLFF TPSGSYKVQ IDY KKT+ +YDP+MSTCSILQPHHDF+M+DIQS++IPP+ DTVF LLNCSIDSPVLNHYK LCFNF GH+CDELYG CNAFRVFHLLTNSSPPCCFT Y+TV++MSMNILDCTHYT+V N+D L+G+GPLDWVYGIKLS+S+PD GCE C QSGGTCGFDT+T G+LCLCS Sbjct: 33 CRTSCGRVDIRYPFGVDDGCGAPQFRGMFNCSN-DLFFITPSGSYKVQQIDYEKKTIEVYDPAMSTCSILQPHHDFVMSDIQSSMIPPTPDTVFALLNCSIDSPVLNHYKNLCFNFSGHSCDELYGSCNAFRVFHLLTNSSPPCCFTGYDTVRYMSMNILDCTHYTTVVNTDNLKGIGPLDWVYGIKLSYSMPDTGCERCSQSGGTCGFDTETGGMLCLCS 252
BLAST of GT624380 vs. TrEMBL
Match: D7T675_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_20.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00017668001 PE=4 SV=1) HSP 1 Score: 382.104 bits (980), Expect = 3.061e-104 Identity = 162/222 (72.97%), Postives = 199/222 (89.64%), Query Frame = 3 Query: 144 PCKTSCGTIPINYPFALEDGCGSPQFRQMFNCTTTDLFFQTPSGSYKVQSIDYTKKTMTLYDPSMSTCSILQPHHDFIMTDIQSAIIPPSQDTVFVLLNCSIDSPVLNHYKYLCFNFEGHTCDELYGGCNAFRVFHLLTNSSPPCCFTSYNTVKFMSMNILDCTHYTSVFNSDKLRGVGPLDWVYGIKLSFSVPDIGCESCKQSGGTCGFDTDTQGLLCLCS 809 PC++ CGTIP+ YPF +++GCG+PQ++ M NC+T DLFF TPSG+YKVQ+IDY KKTM +YDP+MSTCSILQPHHDF+M+DIQSA+IPP+ DTVFVLLNCSIDSPVLNHYK LCFNF GH+CDELY C +F++FHLL+NSSPPCCFT Y+TVK+MSMNILDC+HYTSV+++D L+G+GPLDW YGIKLS+++PD GCE C +SGGTCGFDT T+G LC+CS Sbjct: 30 PCRSFCGTIPVKYPFGVDEGCGAPQYKGMLNCST-DLFFLTPSGNYKVQAIDYDKKTMVVYDPAMSTCSILQPHHDFLMSDIQSAMIPPASDTVFVLLNCSIDSPVLNHYKSLCFNFSGHSCDELYSACTSFKLFHLLSNSSPPCCFTGYDTVKYMSMNILDCSHYTSVYDTDGLKGIGPLDWSYGIKLSYAIPDTGCERCTRSGGTCGFDTQTEGTLCICS 250
BLAST of GT624380 vs. TrEMBL
Match: C6TFA5_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1) HSP 1 Score: 347.051 bits (889), Expect = 1.469e-94 Identity = 163/204 (79.90%), Postives = 175/204 (85.78%), Query Frame = 3 Query: 60 LPPPFTIIKLVXXXXXXXXXXXXXXXXSPCKTSCGTIPINYPFALEDGCGSPQFRQMFNCTTTDLFFQTPSGSYKVQSIDYTKKTMTLYDPSMSTCSILQPHHDFIMTDIQSAIIPPSQDTVFVLLNCSIDSPVLNHYKYLCFNFEGHTCDELYGGCNAFRVFHLLTNSSPPCCFTSYNTVKFMSMNILDCTHYTSVFNSDKLR 671 L PFTI KL+ SPCKT+CG+IPINYPF LEDGCG+PQFR M NC+T DLFFQTPSGSYKVQSIDY KKTM +YDPS+STCSILQPHHDF MTD+QSAIIPPSQDTVFVLLNCSIDSPVLNHYKYLCFNF GHTCDELYG CNAFRVFHLLTNSSPPCCFTSY+TVKFMSMNILDCTHYTS+FN+D L+ Sbjct: 6 LSSPFTIFKLLILTLLLQVIPTLTL--SPCKTTCGSIPINYPFGLEDGCGAPQFRHMLNCST-DLFFQTPSGSYKVQSIDYDKKTMVIYDPSLSTCSILQPHHDFQMTDVQSAIIPPSQDTVFVLLNCSIDSPVLNHYKYLCFNFAGHTCDELYGSCNAFRVFHLLTNSSPPCCFTSYSTVKFMSMNILDCTHYTSMFNTDNLK 206 HSP 2 Score: 25.409 bits (54), Expect = 1.469e-94 Identity = 11/15 (73.33%), Postives = 12/15 (80.00%), Query Frame = 1 Query: 691 GFMGLNFLLVCPILD 735 GFMG +FL VC ILD Sbjct: 213 GFMGSSFLSVCLILD 227
BLAST of GT624380 vs. TrEMBL
Match: B9HX90_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_822247 PE=4 SV=1) HSP 1 Score: 348.206 bits (892), Expect = 4.898e-94 Identity = 156/194 (80.41%), Postives = 172/194 (88.66%), Query Frame = 3 Query: 228 MFNCTTTDLFFQTPSGSYKVQSIDYTKKTMTLYDPSMSTCSILQPHHDFIMTDIQSAIIPPSQDTVFVLLNCSIDSPVLNHYKYLCFNFEGHTCDELYGGCNAFRVFHLLTNSSPPCCFTSYNTVKFMSMNILDCTHYTSVFNSDKLRGVGPLDWVYGIKLSFSVPDIGCESCKQSGGTCGFDTDTQGLLCLCS 809 M NC+T DLFF TPSG YKVQ IDY KKTMT+YDP+MSTCSILQPHHDFIMTDIQS IPP+ DTVF LLNCSIDSPVLNHYK LCF+F GH+CDELYG CNAFRVFHLLTNSSPPCCFT Y+TVKFM MNILDCTHYT+V N+D LRG+GPLDWVYGIKLSF+VP+ GCE C QSGGTCG+DT+T+ + CLCS Sbjct: 1 MLNCST-DLFFLTPSGGYKVQHIDYDKKTMTIYDPAMSTCSILQPHHDFIMTDIQSVTIPPTPDTVFALLNCSIDSPVLNHYKNLCFDFSGHSCDELYGACNAFRVFHLLTNSSPPCCFTGYDTVKFMRMNILDCTHYTTVINTDNLRGIGPLDWVYGIKLSFTVPETGCERCSQSGGTCGYDTETEVMTCLCS 193
BLAST of GT624380 vs. TrEMBL
Match: A9P8X3_POPTR (Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1) HSP 1 Score: 343.584 bits (880), Expect = 1.206e-92 Identity = 154/194 (79.38%), Postives = 171/194 (88.14%), Query Frame = 3 Query: 228 MFNCTTTDLFFQTPSGSYKVQSIDYTKKTMTLYDPSMSTCSILQPHHDFIMTDIQSAIIPPSQDTVFVLLNCSIDSPVLNHYKYLCFNFEGHTCDELYGGCNAFRVFHLLTNSSPPCCFTSYNTVKFMSMNILDCTHYTSVFNSDKLRGVGPLDWVYGIKLSFSVPDIGCESCKQSGGTCGFDTDTQGLLCLCS 809 M NC+T DLFF TPSG YKVQ IDY KKTMT+YDP+MSTCSILQPHHDFIMTDIQS I P+ DTVF LLNCSIDSPVLNHYK LCF+F GH+CDELYG CNAFRVFHLLTNSSPPCCFT Y+TVKFMSMNILDCTHYT+V N+D L G+ P DWVYGIKLS+SVP+ GCE C QSGGTCG+DT+T+G++CLCS Sbjct: 1 MLNCST-DLFFLTPSGDYKVQHIDYDKKTMTIYDPAMSTCSILQPHHDFIMTDIQSVTISPTPDTVFALLNCSIDSPVLNHYKNLCFSFSGHSCDELYGACNAFRVFHLLTNSSPPCCFTGYDTVKFMSMNILDCTHYTTVINTDSLMGIVPSDWVYGIKLSYSVPETGCERCSQSGGTCGYDTETEGMMCLCS 193
BLAST of GT624380 vs. TrEMBL
Match: D7L6R5_ARALY (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_341872 PE=4 SV=1) HSP 1 Score: 335.88 bits (860), Expect = 2.515e-90 Identity = 151/228 (66.23%), Postives = 184/228 (80.70%), Query Frame = 3 Query: 147 CKTSCGTIPINYPFALEDGCGSPQFRQMFNCTTTDLFFQTPSGSYKVQSIDYTKKTMTLYDPSMSTCSILQPHHDFIMTDIQSAIIPPSQDTVFVLLNCSIDSPVLNHYKYLCFNFEGHTCDELYGGCNAFRVFHLLT-------NSSPPCCFTSYNTVKFMSMNILDCTHYTSVFNSDKLRGVGPLDWVYGIKLSFSVPDIGCESCKQSGGTCGFDTDTQGLLCLCS 809 C+T CG IPINYPF ++ GCGSPQF+ MFNC+T DLFF TPSGSYKVQSIDY KKTM ++DP+MSTCSILQPHHDF M DIQ+A+I PS DTVF L NCS DSPV N Y+ LCFN GH+CDELY C +FR+F+ + +++P CCFTSY+TV+ MSMNILDC+HYT+V ++ K+RGV PLDW YGI+LSFSVP+IGC+ C++SGGTCGFD +T+ LC CS Sbjct: 30 CRTLCGNIPINYPFGIDGGCGSPQFKGMFNCST-DLFFTTPSGSYKVQSIDYEKKTMVIFDPAMSTCSILQPHHDFKMADIQNALIRPSYDTVFALFNCSNDSPVHNRYRNLCFNAAGHSCDELYSSCTSFRIFNTTSPSGNSTIHTTPYCCFTSYDTVRVMSMNILDCSHYTTVIDNGKMRGVAPLDWSYGIELSFSVPEIGCDRCRKSGGTCGFDAETEIFLCQCS 256
BLAST of GT624380 vs. TrEMBL
Match: Q9LUT6_ARATH (Gb|AAD32889.1 OS=Arabidopsis thaliana GN=At3g17350 PE=4 SV=1) HSP 1 Score: 329.717 bits (844), Expect = 1.803e-88 Identity = 147/229 (64.19%), Postives = 183/229 (79.91%), Query Frame = 3 Query: 147 CKTSCGTIPINYPFALEDGCGSPQFRQMFNCTTTDLFFQTPSGSYKVQSIDYTKKTMTLYDPSMSTCSILQPHHDFIMTDIQSAIIPPSQDTVFVLLNCSIDSPVLNHYKYLCFNFEGHTCDELYGGCNAFRVFHLLT--------NSSPPCCFTSYNTVKFMSMNILDCTHYTSVFNSDKLRGVGPLDWVYGIKLSFSVPDIGCESCKQSGGTCGFDTDTQGLLCLCS 809 C+T CG IPINYPF ++ GCGSPQ+R MFNC+T DL+F TPSGSYKVQSIDY KKTM ++DP+MSTCSILQPHHDF M DIQ+ +I PS DTVF L NCS DSPV N Y+ LCFN GH+CDELY C +FR+F+ + +++P CCFT+Y+TV+ MSMNILDC+HYT+V ++ K+RGVGPLDW YGI+LS+SV +IGC+ C++SGGTCGFD +T+ LC CS Sbjct: 31 CRTLCGNIPINYPFGIDGGCGSPQYRGMFNCST-DLYFTTPSGSYKVQSIDYEKKTMVIFDPAMSTCSILQPHHDFKMADIQNTLIRPSYDTVFALFNCSNDSPVHNRYRNLCFNAAGHSCDELYSSCTSFRIFNTTSPYGNNSTVHTTPYCCFTNYDTVRVMSMNILDCSHYTTVIDNGKMRGVGPLDWSYGIELSYSVTEIGCDRCRKSGGTCGFDAETEIFLCQCS 258
BLAST of GT624380 vs. TrEMBL
Match: B3VWZ0_POPTN (Expressed protein (Fragment) OS=Populus tremula PE=4 SV=1) HSP 1 Score: 257.299 bits (656), Expect = 1.137e-66 Identity = 114/133 (85.71%), Postives = 124/133 (93.23%), Query Frame = 3 Query: 315 MTLYDPSMSTCSILQPHHDFIMTDIQSAIIPPSQDTVFVLLNCSIDSPVLNHYKYLCFNFEGHTCDELYGGCNAFRVFHLLTNSSPPCCFTSYNTVKFMSMNILDCTHYTSVFNSDKLRGVGPLDWVYGIKLS 713 MT+YDP+MSTCSILQPHHDFIMTDIQS IPP+ DTVF LLNCSIDSPVLNHYK LCF+F GH+CDELYG CNAFRVFHLLTNSSPPCCFT+Y+TVKFMSMNILDCTHYT+V N+D LRG+GPLDWVYGIKLS Sbjct: 1 MTIYDPAMSTCSILQPHHDFIMTDIQSVTIPPTPDTVFALLNCSIDSPVLNHYKNLCFDFSGHSCDELYGACNAFRVFHLLTNSSPPCCFTAYDTVKFMSMNILDCTHYTTVINTDNLRGIGPLDWVYGIKLS 133
BLAST of GT624380 vs. TAIR peptide
Match: AT3G17350.1 (| Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G50290.1); Has 203 Blast hits to 203 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 203; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:5934111-5935276 FORWARD LENGTH=301) HSP 1 Score: 329.717 bits (844), Expect = 1.154e-90 Identity = 147/229 (64.19%), Postives = 183/229 (79.91%), Query Frame = 3 Query: 147 CKTSCGTIPINYPFALEDGCGSPQFRQMFNCTTTDLFFQTPSGSYKVQSIDYTKKTMTLYDPSMSTCSILQPHHDFIMTDIQSAIIPPSQDTVFVLLNCSIDSPVLNHYKYLCFNFEGHTCDELYGGCNAFRVFHLLT--------NSSPPCCFTSYNTVKFMSMNILDCTHYTSVFNSDKLRGVGPLDWVYGIKLSFSVPDIGCESCKQSGGTCGFDTDTQGLLCLCS 809 C+T CG IPINYPF ++ GCGSPQ+R MFNC+T DL+F TPSGSYKVQSIDY KKTM ++DP+MSTCSILQPHHDF M DIQ+ +I PS DTVF L NCS DSPV N Y+ LCFN GH+CDELY C +FR+F+ + +++P CCFT+Y+TV+ MSMNILDC+HYT+V ++ K+RGVGPLDW YGI+LS+SV +IGC+ C++SGGTCGFD +T+ LC CS Sbjct: 31 CRTLCGNIPINYPFGIDGGCGSPQYRGMFNCST-DLYFTTPSGSYKVQSIDYEKKTMVIFDPAMSTCSILQPHHDFKMADIQNTLIRPSYDTVFALFNCSNDSPVHNRYRNLCFNAAGHSCDELYSSCTSFRIFNTTSPYGNNSTVHTTPYCCFTNYDTVRVMSMNILDCSHYTTVIDNGKMRGVGPLDWSYGIELSYSVTEIGCDRCRKSGGTCGFDAETEIFLCQCS 258
BLAST of GT624380 vs. TAIR peptide
Match: AT5G50290.1 (| Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G17350.1); Has 300 Blast hits to 300 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 300; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr5:20461814-20463896 FORWARD LENGTH=303) HSP 1 Score: 153.295 bits (386), Expect = 1.480e-37 Identity = 83/237 (35.02%), Postives = 130/237 (54.85%), Query Frame = 3 Query: 147 CKTSCGTIPINYPFALEDGCGSPQFRQMFNCTTTDLFFQTPSGSYKVQSIDYTKKTMTLYDPSMSTCSIL---QPHHDFIMTDIQSAIIPPSQDTVFVLLNCSIDSPVLNHY---KYLCFNFEGHTCDELYGGCNA-----FRVFHLLTNSSPP-CCFTSYNTVKFMSMNILDCTHYTSVFNSDKLRGVGPLDWVYGIKLSFSV--PDIGCESCKQSGGTCGFD-TDTQGL--LCLC 806 C++ CG I ++YPF + +GCG P +R + C L F SGSY+V IDY +++TL+DP MS C + + F D ++ P+ D VF+L+ CS SP+ + K C N G +C+E Y C A +R + + S PP CC + +VK ++++ L+C Y+S +N L+ GP DW YGI++ + + D C +C + GTCG++ D GL +C+C Sbjct: 22 CRSYCGNITVDYPFGIRNGCGHPGYRDLLFCMNDVLMFHISSGSYRVLDIDYAYQSITLHDPHMSNCETIVLGGKGNGFEAEDWRTPYFNPTSDNVFMLIGCSPKSPIFQGFPEKKVPCRNISGMSCEE-YMSCPAWDMVGYRQPGIHSGSGPPMCCGVGFESVKAINLSKLECEGYSSAYNLAPLKLRGPSDWAYGIRVKYELQGSDAFCRACVATSGTCGYEPADGGGLRHVCMC 257
BLAST of GT624380 vs. TAIR peptide
Match: AT1G10380.1 (| Symbols: | Putative membrane lipoprotein | chr1:3400706-3402110 FORWARD LENGTH=305) HSP 1 Score: 129.798 bits (325), Expect = 1.753e-30 Identity = 80/238 (33.61%), Postives = 112/238 (47.06%), Query Frame = 3 Query: 147 CKTSCGTIPINYPFALEDGCGSPQFRQMFNCTTTD--LFFQTPSGSYKVQSIDYTKKTMTLYDPSMSTCSILQPHHDFIMTDIQSAIIPPSQDTVFVLLNCSID-SPVLNHYK------YLCFNFEGHTCDELYGGCNAFRVFHLLTNSSPPCCF---TSYNTVKFMSMNILDCTHYTSVFNSDKLRGVGPLDWVYGIKLSF------SVPDIGCESCKQSGGTCGFDTDTQGLLCLC 806 C+ +CG IPI YP GCG P+F + C L T +GSY + S+DY K+ + + DPSMSTC+ +P H F + A DTVF LL+CS+D SPV LC C LY C A + +L ++ CC M +N L C+ Y+ +N + P +W YGI L + P + C SC++S G CGF+T + +C C Sbjct: 29 CQKTCGQIPIKYPLGTGSGCGDPRFTRYITCDPDQQTLTLTTHTGSYPITSVDYAKQEIYVTDPSMSTCACTRPSHGFGLD--WDAPFSFHDDTVFTLLDCSVDESPVFTPLSNGSGRVSLCDRQSSSICTFLYSNCRAISLINLQVST---CCVYVPLDLGPSFEMDLNKLKCSSYSGFYNLGPGQESHPENWNYGIALKYKFNVFDEYPGV-CGSCERSNGACGFNTQSSSFVCNC 260
BLAST of GT624380 vs. TAIR peptide
Match: AT1G11915.1 (| Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: root; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G17350.1); Has 261 Blast hits to 261 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 261; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:4021830-4023084 FORWARD LENGTH=329) HSP 1 Score: 124.405 bits (311), Expect = 7.363e-29 Identity = 75/234 (32.05%), Postives = 108/234 (46.15%), Query Frame = 3 Query: 147 CKTSCGTIPINYPFALEDGCGSPQFRQMFNCTTTD--LFFQTPSGSYKVQSIDYTKKTMTLYDPSMSTC---SILQPHHDFIMTDIQSAIIPPSQDTVFVLLNCSIDSPVLNHYKYLCFNFEGH---TCDELYGGCNAFRVFHLLTNSSPPCCFTSYNTVKFMSMNILDCTHYTSVFNSDKLRGVGPLDWV--YGIKLSFSVP----DIGCESCKQSGGTCGFDTDTQGLLCLC 806 C++SCG IPINYPF+++DGCGSP +R M C+ D L +TPSG Y V+SI Y+ + + DP M C +P F + + P D +F NC+ D ++ C F +CD C S CC + + + + DC YTSV+ P D YGI++ + P + C+ + GG CGF+T T+ LCLC Sbjct: 31 CRSSCGNIPINYPFSIDDGCGSPYYRHMLICSDNDTKLELRTPSGKYPVKSISYSDPHLLVSDPFMWNCQDRDNFRPTRSFSIDSSTHFTVSPQNDYLF--FNCNTDKVIVEPKPLFCERFPDRCDSSCDSSSYLCRHLPECGSALGSRVSCCSYYPKATQSLRLMLQDCATYTSVYWRSTGVENAPYDQFPEYGIRVDYEFPVTMKCLLCQETTKGGGVCGFNTRTRDFLCLC 262 The following BLAST results are available for this feature:
BLAST of GT624380 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Lens culinaris unigene v1 vs Trembl) Total hits: 10
BLAST of GT624380 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Lens culinaris unigene v1 vs TAIR 10 peptide) Total hits: 4
InterPro
Analysis Name: InterProScan analysis for Lens culinaris unigene v1
Date Performed: 2011-01-06
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >GT624380 ID=GT624380; Name=GT624380; organism=Lens culinaris; type=EST; length=810bpback to top |