GT626269

EST Overview
NameGT626269
Unique NameGT626269
TypeEST
OrganismLens culinaris (lentil)
Sequence length714
Unigenes
This EST is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Lens culinaris unigene v1Lens culinaris unigene v1EST
Libraries
Library NameType
LIBEST_025390 LCUSE1NGcdna_library
Homology
BLAST of GT626269 vs. TrEMBL
Match: D7T103_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_85.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00036698001 PE=4 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 2.233e-41
Identity = 87/146 (59.59%), Postives = 111/146 (76.03%), Query Frame = 1
Query:    4 ADVERQLSECSKSLQWNKDRVRELEMKLKSMQEQLISAKDAAAANEEQLSAELSTVNKLNELYKESSEEWSRKAADLEGAVKAMESHLKQVEDDYKDRLEKEFSIRKQFXXXXXXXXXXXXXXXXXXXTSKKMNELSILPLRTFST 441
            +DVER+L+ECS SL+WNK+RV+ELEMKL SMQ++L S+KDAAAANE++LSAE+ TVNKL ELYKESSEEWSRKA +LEG +KA+E+HL QVE+DYK+RLEKE   RK+                    TS++ NEL++LPL +  T
Sbjct:  226 SDVERRLNECSSSLKWNKERVKELEMKLTSMQQELCSSKDAAAANEQRLSAEIMTVNKLVELYKESSEEWSRKAGELEGVIKALETHLIQVENDYKERLEKEVFARKELEKEAADLKGKLEKCEAEMETSRRANELNLLPLSSLIT 371          
BLAST of GT626269 vs. TrEMBL
Match: B9RYK2_RICCO (Nucleoprotein TPR, putative OS=Ricinus communis GN=RCOM_1128370 PE=4 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 9.383e-40
Identity = 83/148 (56.08%), Postives = 109/148 (73.65%), Query Frame = 1
Query:    1 LADVERQLSECSKSLQWNKDRVRELEMKLKSMQEQLISAKDAAAANEEQLSAELSTVNKLNELYKESSEEWSRKAADLEGAVKAMESHLKQVEDDYKDRLEKEFSIRKQFXXXXXXXXXXXXXXXXXXXTSKKMNELSILPLRTFSTE 444
            LADV+R+ +ECS SL+WNK+RV+ELE+KL SMQE+L S +DAAAANEE+ SAE+ST+NKL ELYKESSEEWS+KA +LEG +KA+E+HL QVE+DYK+RL+KE   R Q                    + +K NEL++LPL + + E
Sbjct:  225 LADVKRRSNECSSSLKWNKERVKELEIKLASMQEELCSHRDAAAANEERFSAEISTINKLVELYKESSEEWSKKAGELEGVIKALETHLNQVENDYKERLDKEICARNQLQKEAADLKNKLANCEAEVESGRKANELNLLPLGSLTIE 372          
BLAST of GT626269 vs. TrEMBL
Match: B9HI19_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_820461 PE=4 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 1.225e-39
Identity = 86/151 (56.95%), Postives = 113/151 (74.83%), Query Frame = 1
Query:    1 LADVERQLSECSKSLQWNKDRVRELEMKLKSMQEQLISAKDAAAANEEQLSAELSTVNKLNELYKESSEEWSRKAADLEGAVKAMESHLKQVEDDYKDRLEKEFSIRKQFXXXXXXXXXXXXXXXXXXXTSKKMNELSILPLRTFSTEPYV 453
            LAD ER+ +E S S + + +RV+ELE+KL S+QE+L S++DAAAANEE+LSAELSTVNKL ELYKESSEEWS+KA +LEG +KA+E+HL QVE+DYK+RLEKE S RKQ                    +S+K NELS+LPL +++TE ++
Sbjct:  225 LADAERRFNESSSSSKRSMERVKELELKLTSVQEELCSSRDAAAANEERLSAELSTVNKLVELYKESSEEWSQKAGELEGVIKALETHLSQVENDYKERLEKEISARKQLEKEAGDLKDKLERCEADIESSRKTNELSLLPLNSYTTERWM 375          
BLAST of GT626269 vs. TrEMBL
Match: Q6Z7R9_ORYSJ (Os02g0741500 protein OS=Oryza sativa subsp. japonica GN=P0516G10.28 PE=4 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 3.574e-31
Identity = 71/142 (50.00%), Postives = 100/142 (70.42%), Query Frame = 1
Query:    1 LADVERQLSECSKSLQWNKDRVRELEMKLKSMQEQLISAKDAAAANEEQLSAELSTVNKLNELYKESSEEWSRKAADLEGAVKAMESHLKQVEDDYKDRLEKEFSIRKQFXXXXXXXXXXXXXXXXXXXTSKKMNELSILPL 426
            +A++ER+ SE S SL+ +K+RV ELE ++  M+++L S KDAAAANE++L+AELSTV KL EL+KESSEEWS+KA +LEG +KA+E+HL QVED+YK++LEKE S ++                      ++K +ELS  PL
Sbjct:  225 VAELERETSESSSSLRRSKERVSELEQRVSYMEKELCSTKDAAAANEQRLAAELSTVMKLAELHKESSEEWSKKAGELEGVIKALETHLTQVEDEYKEKLEKETSAKRDLEMEATYLKQKLEKCESDLENTRKSSELSFTPL 366          
BLAST of GT626269 vs. TrEMBL
Match: B9F2X6_ORYSJ (Putative uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_08332 PE=4 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 3.574e-31
Identity = 71/142 (50.00%), Postives = 100/142 (70.42%), Query Frame = 1
Query:    1 LADVERQLSECSKSLQWNKDRVRELEMKLKSMQEQLISAKDAAAANEEQLSAELSTVNKLNELYKESSEEWSRKAADLEGAVKAMESHLKQVEDDYKDRLEKEFSIRKQFXXXXXXXXXXXXXXXXXXXTSKKMNELSILPL 426
            +A++ER+ SE S SL+ +K+RV ELE ++  M+++L S KDAAAANE++L+AELSTV KL EL+KESSEEWS+KA +LEG +KA+E+HL QVED+YK++LEKE S ++                      ++K +ELS  PL
Sbjct:  215 VAELERETSESSSSLRRSKERVSELEQRVSYMEKELCSTKDAAAANEQRLAAELSTVMKLAELHKESSEEWSKKAGELEGVIKALETHLTQVEDEYKEKLEKETSAKRDLEMEATYLKQKLEKCESDLENTRKSSELSFTPL 356          
BLAST of GT626269 vs. TrEMBL
Match: B8AID9_ORYSI (Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_08886 PE=4 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 3.574e-31
Identity = 71/142 (50.00%), Postives = 100/142 (70.42%), Query Frame = 1
Query:    1 LADVERQLSECSKSLQWNKDRVRELEMKLKSMQEQLISAKDAAAANEEQLSAELSTVNKLNELYKESSEEWSRKAADLEGAVKAMESHLKQVEDDYKDRLEKEFSIRKQFXXXXXXXXXXXXXXXXXXXTSKKMNELSILPL 426
            +A++ER+ SE S SL+ +K+RV ELE ++  M+++L S KDAAAANE++L+AELSTV KL EL+KESSEEWS+KA +LEG +KA+E+HL QVED+YK++LEKE S ++                      ++K +ELS  PL
Sbjct:  225 VAELERETSESSSSLRRSKERVSELEQRVSYMEKELCSTKDAAAANEQRLAAELSTVMKLAELHKESSEEWSKKAGELEGVIKALETHLTQVEDEYKEKLEKETSAKRDLEMEATYLKQKLEKCESDLENTRKSSELSFTPL 366          
BLAST of GT626269 vs. TrEMBL
Match: C5XYX0_SORBI (Putative uncharacterized protein Sb04g028320 OS=Sorghum bicolor GN=Sb04g028320 PE=4 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 2.173e-20
Identity = 57/148 (38.51%), Postives = 85/148 (57.43%), Query Frame = 1
Query:    1 LADVERQLSECSKSLQWNKDRVRELEMKLKSMQEQLISAKDAAAANEEQLSAELSTVNKLNELYKESSEEWSRKAADLEGAVKAMESHLKQVEDDYKDRLEKEFSIRKQFXXXXXXXXXXXXXXXXXXXTSKKMNELSILPLRTFSTE 444
            +A++ER++SE S SL+ +KDR+ ELE +L  M++                      V KL EL+KESSEEWS+KA +LEG +KA+E+HL QVED+YK+RLEKE   R+                      ++K +ELS++PL + + +
Sbjct:  225 IAELEREISESSSSLRRSKDRISELEQRLSYMEK----------------------VMKLAELHKESSEEWSKKAGELEGVIKALETHLTQVEDEYKERLEKESLSRRDLEKEAVNLKQKLEKCELDLENTRKSSELSLIPLTSIAAD 350          
BLAST of GT626269 vs. TrEMBL
Match: A9RGQ8_PHYPA (Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_113891 PE=4 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.838e-20
Identity = 48/109 (44.04%), Postives = 80/109 (73.39%), Query Frame = 1
Query:    1 LADVERQLSECSKSLQWNKDRVRELEMKLKSMQEQLISAKDAAAANEEQLSAELSTVNKLNELYKESSEEWSRKAADLEGAVKAMESHLKQVEDDYKDRLEKEFSIRKQ 327
            L++ ER + + +++LQ  K+   ELE KL  ++E+L   K+ +A  EEQ +AE++T  KL ELYK+SS++WS+K+ +LEG +KA+E+HL Q+E DYK++L+ E + R++
Sbjct:  225 LSEAERSVKDTTQTLQRTKEYNLELESKLSQVREELKFLKEDSAVKEEQFAAEVATAAKLLELYKQSSDDWSKKSHELEGVIKALETHLNQIEADYKEKLKTEQNAREE 333          
BLAST of GT626269 vs. TrEMBL
Match: A5B0H5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_006234 PE=4 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.722e-17
Identity = 48/91 (52.75%), Postives = 60/91 (65.93%), Query Frame = 1
Query:  169 VNKLNELYKESSEEWSRKAADLEGAVKAMESHLKQVEDDYKDRLEKEFSIRKQFXXXXXXXXXXXXXXXXXXXTSKKMNELSILPLRTFST 441
            VNKL ELYKESSEEWSRKA +LEG +KA+E+HL QVE+DYK+RLEKE   RK+                    TS++ NEL++LPL +  T
Sbjct:    3 VNKLVELYKESSEEWSRKAGELEGVIKALETHLIQVENDYKERLEKEVFARKELEKEAADLKGKLEKCEAEMETSRRANELNLLPLSSLIT 93          
BLAST of GT626269 vs. TrEMBL
Match: A5B0H8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_006237 PE=4 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 2.249e-17
Identity = 50/95 (52.63%), Postives = 69/95 (72.63%), Query Frame = 1
Query:    4 ADVERQLSECSKSLQWNKDRVRELEMKLKSMQEQLISAKDAAAANEEQLSAELSTVNKLNE----LYKESSEEWSRKAADLEGAVKAMESHLKQV 276
            +DVER+L+ECS SL+WNK+RV+ELEMKL SMQ++L S+KDAAAANE++LSAE+ TV + +E        S   W  K  +L+  V A++S L +V
Sbjct:  157 SDVERRLNECSSSLKWNKERVKELEMKLTSMQQELCSSKDAAAANEQRLSAEIMTVTRGSEDLLRAKGGSKVLWREKGVELKSYVDAVKSSLGRV 251          
BLAST of GT626269 vs. SwissProt
Match: NUA_ARATH (Nuclear-pore anchor OS=Arabidopsis thaliana GN=NUA PE=1 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 6.266e-33
Identity = 71/146 (48.63%), Postives = 94/146 (64.38%), Query Frame = 1
Query:    1 LADVERQLSECSKSLQWNKDRVRELEMKLKSMQEQLISAKDAAAANEEQLSAELSTVNKLNELYKESSEEWSRKAADLEGAVKAMESHLKQVEDDYKDRLEKEFSIRKQFXXXXXXXXXXXXXXXXXXXTSKKMNELSILPLRTFS 438
            L DVE+   ECS SL W+K+R+RELE K+ S+QE L S KDAA   EEQ +AEL T NKL +LYKESSEEWSRKA +LEG +KA+E+ L QVE  YK+RL+KE S ++                      ++K +EL+++P   F+
Sbjct:  226 LVDVEKNYIECSSSLNWHKERLRELETKIGSLQEDLSSCKDAATTTEEQYTAELFTANKLVDLYKESSEEWSRKAGELEGVIKALEARLSQVESSYKERLDKEVSTKQLLEKENGDLKQKLEKCEAEIEKTRKTDELNLIPFSNFT 371          
BLAST of GT626269 vs. TAIR peptide
Match: AT1G79280.2 (| Symbols: NUA | nuclear pore anchor | chr1:29819176-29832809 REVERSE LENGTH=2115)

HSP 1 Score: 140.969 bits (354), Expect = 6.346e-34
Identity = 71/146 (48.63%), Postives = 94/146 (64.38%), Query Frame = 1
Query:    1 LADVERQLSECSKSLQWNKDRVRELEMKLKSMQEQLISAKDAAAANEEQLSAELSTVNKLNELYKESSEEWSRKAADLEGAVKAMESHLKQVEDDYKDRLEKEFSIRKQFXXXXXXXXXXXXXXXXXXXTSKKMNELSILPLRTFS 438
            L DVE+   ECS SL W+K+R+RELE K+ S+QE L S KDAA   EEQ +AEL T NKL +LYKESSEEWSRKA +LEG +KA+E+ L QVE  YK+RL+KE S ++                      ++K +EL+++P   F+
Sbjct:  226 LVDVEKNYIECSSSLNWHKERLRELETKIGSLQEDLSSCKDAATTTEEQYTAELFTANKLVDLYKESSEEWSRKAGELEGVIKALEARLSQVESSYKERLDKEVSTKQLLEKENGDLKQKLEKCEAEIEKTRKTDELNLIPFSNFT 371          
BLAST of GT626269 vs. TAIR peptide
Match: AT1G79280.3 (| Symbols: NUA | nuclear pore anchor | chr1:29819176-29832809 REVERSE LENGTH=2094)

HSP 1 Score: 140.969 bits (354), Expect = 6.346e-34
Identity = 71/146 (48.63%), Postives = 94/146 (64.38%), Query Frame = 1
Query:    1 LADVERQLSECSKSLQWNKDRVRELEMKLKSMQEQLISAKDAAAANEEQLSAELSTVNKLNELYKESSEEWSRKAADLEGAVKAMESHLKQVEDDYKDRLEKEFSIRKQFXXXXXXXXXXXXXXXXXXXTSKKMNELSILPLRTFS 438
            L DVE+   ECS SL W+K+R+RELE K+ S+QE L S KDAA   EEQ +AEL T NKL +LYKESSEEWSRKA +LEG +KA+E+ L QVE  YK+RL+KE S ++                      ++K +EL+++P   F+
Sbjct:  226 LVDVEKNYIECSSSLNWHKERLRELETKIGSLQEDLSSCKDAATTTEEQYTAELFTANKLVDLYKESSEEWSRKAGELEGVIKALEARLSQVESSYKERLDKEVSTKQLLEKENGDLKQKLEKCEAEIEKTRKTDELNLIPFSNFT 371          
BLAST of GT626269 vs. TAIR peptide
Match: AT1G79280.1 (| Symbols: NUA, AtTPR | nuclear pore anchor | chr1:29819176-29832809 REVERSE LENGTH=2093)

HSP 1 Score: 140.969 bits (354), Expect = 6.346e-34
Identity = 71/146 (48.63%), Postives = 94/146 (64.38%), Query Frame = 1
Query:    1 LADVERQLSECSKSLQWNKDRVRELEMKLKSMQEQLISAKDAAAANEEQLSAELSTVNKLNELYKESSEEWSRKAADLEGAVKAMESHLKQVEDDYKDRLEKEFSIRKQFXXXXXXXXXXXXXXXXXXXTSKKMNELSILPLRTFS 438
            L DVE+   ECS SL W+K+R+RELE K+ S+QE L S KDAA   EEQ +AEL T NKL +LYKESSEEWSRKA +LEG +KA+E+ L QVE  YK+RL+KE S ++                      ++K +EL+++P   F+
Sbjct:  226 LVDVEKNYIECSSSLNWHKERLRELETKIGSLQEDLSSCKDAATTTEEQYTAELFTANKLVDLYKESSEEWSRKAGELEGVIKALEARLSQVESSYKERLDKEVSTKQLLEKENGDLKQKLEKCEAEIEKTRKTDELNLIPFSNFT 371          
The following BLAST results are available for this feature:
BLAST of GT626269 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Lens culinaris unigene v1 vs Trembl)
Total hits: 10
Match NameE-valueIdentityDescription
D7T103_VITVI2.233e-4159.59Whole genome shotgun sequence of line PN40024, sca... [more]
B9RYK2_RICCO9.383e-4056.08Nucleoprotein TPR, putative OS=Ricinus communis GN... [more]
B9HI19_POPTR1.225e-3956.95Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]
Q6Z7R9_ORYSJ3.574e-3150.00Os02g0741500 protein OS=Oryza sativa subsp. japoni... [more]
B9F2X6_ORYSJ3.574e-3150.00Putative uncharacterized protein OS=Oryza sativa s... [more]
B8AID9_ORYSI3.574e-3150.00Putative uncharacterized protein OS=Oryza sativa s... [more]
C5XYX0_SORBI2.173e-2038.51Putative uncharacterized protein Sb04g028320 OS=So... [more]
A9RGQ8_PHYPA2.838e-2044.04Predicted protein OS=Physcomitrella patens subsp. ... [more]
A5B0H5_VITVI1.722e-1752.75Putative uncharacterized protein OS=Vitis vinifera... [more]
A5B0H8_VITVI2.249e-1752.63Putative uncharacterized protein OS=Vitis vinifera... [more]
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BLAST of GT626269 vs. SwissProt
Analysis Date: 2010-12-28 (Homology Analysis: Lens culinaris unigene v1 vs Swissprot)
Total hits: 1
Match NameE-valueIdentityDescription
NUA_ARATH6.266e-3348.63Nuclear-pore anchor OS=Arabidopsis thaliana GN=NUA... [more]
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BLAST of GT626269 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Lens culinaris unigene v1 vs TAIR 10 peptide)
Total hits: 3
Match NameE-valueIdentityDescription
AT1G79280.26.346e-3448.63| Symbols: NUA | nuclear pore anchor | chr1:298191... [more]
AT1G79280.36.346e-3448.63| Symbols: NUA | nuclear pore anchor | chr1:298191... [more]
AT1G79280.16.346e-3448.63| Symbols: NUA, AtTPR | nuclear pore anchor | chr1... [more]
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InterPro
Analysis Name: InterProScan analysis for Lens culinaris unigene v1
Date Performed: 2011-01-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSEGsegsegcoord: 111..129
score
NoneNo IPR availableSEGsegsegcoord: 28..55
score
NoneNo IPR availableSEGsegsegcoord: 10..30
score

Properties
Property NameValue
Singlet in analysisLens culinaris unigene v1
Sequences
The following sequences are available for this feature:

EST sequence

>GT626269 ID=GT626269; Name=GT626269; organism=Lens culinaris; type=EST; length=714bp
CTTGCAGATGTTGAAAGACAGTTGAGTGAATGCTCTAAATCTCTGCAATG
GAATAAGGATCGAGTAAGGGAGCTTGAAATGAAACTTAAATCTATGCAAG
AGCAATTAATATCAGCTAAAGATGCTGCTGCAGCCAACGAAGAGCAATTA
TCTGCTGAACTTTCAACTGTCAATAAGCTTAATGAGCTTTACAAAGAGAG
TTCCGAGGAATGGTCCAGAAAAGCAGCGGACCTAGAGGGTGCTGTAAAAG
CGATGGAGTCACACCTAAAGCAAGTTGAAGATGATTATAAAGACAGACTC
GAGAAGGAATTTTCTATTAGAAAGCAGTTTGAAAAGGAGGCTGCTGATTT
GAAAGAAAAGCTTGAGAAGTGTGAAGCTGAAATTGAGACAAGCAAAAAGA
TGAATGAACTAAGCATTCTACCACTAAGAACCTTCTCCACTGAACCGTAT
GTCTCTGTTGAACTTTTTTTCTGTTCTGAGGCACTTGAATATGCTCATCT
CCCATCTTATTCTTGTGTGTGCTGCTTTTCGCTTAAGTAGCTGGAAATGG
CAAGCCTTGGGGGGCATTGGAAATAGATAGAATTTCATTCTCATTTGTTT
GTTGAGAAACAGTGACTGAAGTATGCAAAAATCTGCCACTTTTGAAAAAT
GATGTAACTCTCAGTTTACTCATCTAACCTTGCCATGGTAAATAACATAG
TTTCCACTTCCCAC
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