GT626719

EST Overview
NameGT626719
Unique NameGT626719
TypeEST
OrganismLens culinaris (lentil)
Sequence length692
Unigenes
This EST is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Lens culinaris unigene v1Lens culinaris unigene v1EST
Libraries
Library NameType
LIBEST_025390 LCUSE1NGcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
Lens culinaris unigene v12010-12-27
Homology Analysis: Lens culinaris unigene v1 vs Trembl2010-12-28
Homology Analysis: Lens culinaris unigene v1 vs TAIR 10 peptide2011-02-03
Homology
BLAST of GT626719 vs. TrEMBL
Match: Q8GTE6_CICAR (Transportin-like protein (Fragment) OS=Cicer arietinum GN=trn PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 2.839e-30
Identity = 70/99 (70.71%), Postives = 70/99 (70.71%), Query Frame = 2
Query:  185 CFQVKVNPSGALSSLVYMCKAIASWHVCCQHFLKCQSDLRFL*YNFFC*HV*EIRSEDLHNEVCQVLHGYKQMLRNGAWDQCMSALEPPIKEKLSKYQV 481
            C  VK NPSGALSSLVYMCKAIASWH                          EIRSEDLHNEVCQVLHGYKQMLRNGAWDQCMSALEPPIKEKLSKYQV
Sbjct:  355 CAMVKANPSGALSSLVYMCKAIASWH--------------------------EIRSEDLHNEVCQVLHGYKQMLRNGAWDQCMSALEPPIKEKLSKYQV 427          
BLAST of GT626719 vs. TrEMBL
Match: D7U509_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_38.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00023974001 PE=4 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 5.354e-29
Identity = 66/99 (66.67%), Postives = 70/99 (70.71%), Query Frame = 2
Query:  185 CFQVKVNPSGALSSLVYMCKAIASWHVCCQHFLKCQSDLRFL*YNFFC*HV*EIRSEDLHNEVCQVLHGYKQMLRNGAWDQCMSALEPPIKEKLSKYQV 481
            C  V+ NPSGALSSLVYMCKAIASWH                          EIRSEDLHNEVCQVLHGYKQMLRNGAW+QCMSALEPP+K+KLSKYQV
Sbjct:  818 CAMVRANPSGALSSLVYMCKAIASWH--------------------------EIRSEDLHNEVCQVLHGYKQMLRNGAWEQCMSALEPPVKDKLSKYQV 890          
BLAST of GT626719 vs. TrEMBL
Match: A5BTV3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_033561 PE=4 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 3.470e-28
Identity = 65/96 (67.71%), Postives = 69/96 (71.88%), Query Frame = 2
Query:  194 VKVNPSGALSSLVYMCKAIASWHVCCQHFLKCQSDLRFL*YNFFC*HV*EIRSEDLHNEVCQVLHGYKQMLRNGAWDQCMSALEPPIKEKLSKYQV 481
            V+ NPSGALSSLVYMCKAIASWH                          EIRSEDLHNEVCQVLHGYKQMLRNGAW+QCMSALEPP+K+KLSKYQV
Sbjct:  459 VRANPSGALSSLVYMCKAIASWH--------------------------EIRSEDLHNEVCQVLHGYKQMLRNGAWEQCMSALEPPVKDKLSKYQV 528          
BLAST of GT626719 vs. TrEMBL
Match: B9HR27_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_804102 PE=4 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.458e-26
Identity = 64/99 (64.65%), Postives = 68/99 (68.69%), Query Frame = 2
Query:  185 CFQVKVNPSGALSSLVYMCKAIASWHVCCQHFLKCQSDLRFL*YNFFC*HV*EIRSEDLHNEVCQVLHGYKQMLRNGAWDQCMSALEPPIKEKLSKYQV 481
            C  V+ NPSGALSSLV+MCKAIASWH                          EIRSE+LHNEVCQVLHGYKQMLRNGAWDQ MSALEPP+KEKL KYQV
Sbjct:  814 CAMVRRNPSGALSSLVFMCKAIASWH--------------------------EIRSEELHNEVCQVLHGYKQMLRNGAWDQYMSALEPPVKEKLLKYQV 886          
BLAST of GT626719 vs. TrEMBL
Match: B9H1L0_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_818217 PE=4 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 3.248e-26
Identity = 63/99 (63.64%), Postives = 67/99 (67.68%), Query Frame = 2
Query:  185 CFQVKVNPSGALSSLVYMCKAIASWHVCCQHFLKCQSDLRFL*YNFFC*HV*EIRSEDLHNEVCQVLHGYKQMLRNGAWDQCMSALEPPIKEKLSKYQV 481
            C  V+ NPSGALSSLV+MCKAIASWH                          EIRS +LHNEVCQVLHGYKQMLRNGAWDQ MSALEPP+KEKL KYQV
Sbjct:  816 CAMVRTNPSGALSSLVFMCKAIASWH--------------------------EIRSAELHNEVCQVLHGYKQMLRNGAWDQYMSALEPPVKEKLLKYQV 888          
BLAST of GT626719 vs. TrEMBL
Match: D7L890_ARALY (Protein transporter OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_900019 PE=4 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 9.472e-18
Identity = 50/99 (50.51%), Postives = 63/99 (63.64%), Query Frame = 2
Query:  185 CFQVKVNPSGALSSLVYMCKAIASWHVCCQHFLKCQSDLRFL*YNFFC*HV*EIRSEDLHNEVCQVLHGYKQMLRNGAWDQCMSALEPPIKEKLSKYQV 481
            C  VKVNPSG +SSLV++C+AIASWH                          EIRSED+ NEV QVL+GYK ML N +W +C+SAL+PP+KE L++YQV
Sbjct:  820 CAVVKVNPSGGVSSLVFICQAIASWH--------------------------EIRSEDVQNEVSQVLNGYKHMLGN-SWAECLSALDPPVKEMLARYQV 891          
BLAST of GT626719 vs. TrEMBL
Match: Q8H2D6_ARATH (Transportin OS=Arabidopsis thaliana GN=TRN1 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 2.110e-17
Identity = 49/99 (49.49%), Postives = 63/99 (63.64%), Query Frame = 2
Query:  185 CFQVKVNPSGALSSLVYMCKAIASWHVCCQHFLKCQSDLRFL*YNFFC*HV*EIRSEDLHNEVCQVLHGYKQMLRNGAWDQCMSALEPPIKEKLSKYQV 481
            C  VKVNPSG +SSLV++C+AIASWH                          EIRSED+  EV QVL+GYK ML N +W +C+SAL+PP+KE+L++YQV
Sbjct:  823 CAVVKVNPSGGVSSLVFICQAIASWH--------------------------EIRSEDVQTEVSQVLNGYKHMLGN-SWAECLSALDPPVKERLARYQV 894          
BLAST of GT626719 vs. TrEMBL
Match: Q8H0U4_ARATH (At2g16950 OS=Arabidopsis thaliana GN=At2g16950 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 2.110e-17
Identity = 49/99 (49.49%), Postives = 63/99 (63.64%), Query Frame = 2
Query:  185 CFQVKVNPSGALSSLVYMCKAIASWHVCCQHFLKCQSDLRFL*YNFFC*HV*EIRSEDLHNEVCQVLHGYKQMLRNGAWDQCMSALEPPIKEKLSKYQV 481
            C  VKVNPSG +SSLV++C+AIASWH                          EIRSED+  EV QVL+GYK ML N +W +C+SAL+PP+KE+L++YQV
Sbjct:  820 CAVVKVNPSGGVSSLVFICQAIASWH--------------------------EIRSEDVQTEVSQVLNGYKHMLGN-SWAECLSALDPPVKERLARYQV 891          
BLAST of GT626719 vs. TrEMBL
Match: Q8H0P3_ORYSA (Transportin (Fragment) OS=Oryza sativa GN=trn1 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.333e-16
Identity = 54/159 (33.96%), Postives = 75/159 (47.17%), Query Frame = 2
Query:   38 KSNSTLQTNLQGGGCLSLRGLCAMVGSPFNTNNSILVDHSCNQCFTISD-----------CFQVKVNPSGALSSLVYMCKAIASWHVCCQHFLKCQSDLRFL*YNFFC*HV*EIRSEDLHNEVCQVLHGYKQMLRNGAWDQCMSALEPPIKEKLSKYQV 481
            KS   L  +L     ++L  LC +       +    +   CN    I D           C  V  NP+GA+ SL ++C+A ASW+                          EI+SE LHNEVCQ+L+GYKQML +G W+QCMS LEP + ++L +Y V
Sbjct:  247 KSPEGLNKSLLENSAITLGRLCWVCPDIVAPHMDHFMQAWCNALCMIRDDFEKEDAFHGLCAMVAANPTGAVGSLTFICQACASWN--------------------------EIKSEGLHNEVCQILNGYKQMLGSGGWEQCMSTLEPAVVQRLGRYGV 379          
BLAST of GT626719 vs. TrEMBL
Match: B9FDR3_ORYSJ (Putative uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_16737 PE=4 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.333e-16
Identity = 54/159 (33.96%), Postives = 75/159 (47.17%), Query Frame = 2
Query:   38 KSNSTLQTNLQGGGCLSLRGLCAMVGSPFNTNNSILVDHSCNQCFTISD-----------CFQVKVNPSGALSSLVYMCKAIASWHVCCQHFLKCQSDLRFL*YNFFC*HV*EIRSEDLHNEVCQVLHGYKQMLRNGAWDQCMSALEPPIKEKLSKYQV 481
            KS   L  +L     ++L  LC +       +    +   CN    I D           C  V  NP+GA+ SL ++C+A ASW+                          EI+SE LHNEVCQ+L+GYKQML +G W+QCMS LEP + ++L +Y V
Sbjct:  717 KSPEGLNKSLLENSAITLGRLCWVCPDIVAPHMDHFMQAWCNALCMIRDDFEKEDAFHGLCAMVAANPTGAVGSLTFICQACASWN--------------------------EIKSEGLHNEVCQILNGYKQMLGSGGWEQCMSTLEPAVVQRLGRYGV 849          
BLAST of GT626719 vs. TAIR peptide
Match: AT2G16950.2 (| Symbols: TRN1, ATTRN1 | transportin 1 | chr2:7353939-7360637 FORWARD LENGTH=891)

HSP 1 Score: 93.2041 bits (230), Expect = 1.431e-19
Identity = 49/99 (49.49%), Postives = 63/99 (63.64%), Query Frame = 2
Query:  185 CFQVKVNPSGALSSLVYMCKAIASWHVCCQHFLKCQSDLRFL*YNFFC*HV*EIRSEDLHNEVCQVLHGYKQMLRNGAWDQCMSALEPPIKEKLSKYQV 481
            C  VKVNPSG +SSLV++C+AIASWH                          EIRSED+  EV QVL+GYK ML N +W +C+SAL+PP+KE+L++YQV
Sbjct:  820 CAVVKVNPSGGVSSLVFICQAIASWH--------------------------EIRSEDVQTEVSQVLNGYKHMLGN-SWAECLSALDPPVKERLARYQV 891          
BLAST of GT626719 vs. TAIR peptide
Match: AT2G16950.1 (| Symbols: TRN1, ATTRN1 | transportin 1 | chr2:7353939-7360637 FORWARD LENGTH=895)

HSP 1 Score: 93.2041 bits (230), Expect = 1.431e-19
Identity = 49/99 (49.49%), Postives = 63/99 (63.64%), Query Frame = 2
Query:  185 CFQVKVNPSGALSSLVYMCKAIASWHVCCQHFLKCQSDLRFL*YNFFC*HV*EIRSEDLHNEVCQVLHGYKQMLRNGAWDQCMSALEPPIKEKLSKYQV 481
            C  VKVNPSG +SSLV++C+AIASWH                          EIRSED+  EV QVL+GYK ML N +W +C+SAL+PP+KE+L++YQV
Sbjct:  824 CAVVKVNPSGGVSSLVFICQAIASWH--------------------------EIRSEDVQTEVSQVLNGYKHMLGN-SWAECLSALDPPVKERLARYQV 895          
BLAST of GT626719 vs. TAIR peptide
Match: AT2G16960.2 (| Symbols: | ARM repeat superfamily protein | chr2:7364683-7368963 FORWARD LENGTH=505)

HSP 1 Score: 60.077 bits (144), Expect = 1.343e-9
Identity = 34/100 (34.00%), Postives = 53/100 (53.00%), Query Frame = 2
Query:  185 CFQVKVNPSGALSSLVYMCKAIASWHVCCQHFLKCQSDLRFL*YNFFC*HV*EIRSEDLHNEVCQVLHGYKQMLRNGAWDQCMSALEPPIKEKL-SKYQV 481
            C  VKVNPS  +SS+ ++C AIASW                           ++ ++ + +E  +VL GYK ML   +W++C+S L+P  KE+L ++YQV
Sbjct:  432 CEMVKVNPSRYVSSVAFICLAIASWK--------------------------DMENKVIQSEFSKVLIGYKNMLGKNSWEECLSVLDPLAKERLAARYQV 505          
BLAST of GT626719 vs. TAIR peptide
Match: AT2G16960.1 (| Symbols: | ARM repeat superfamily protein | chr2:7364683-7368963 FORWARD LENGTH=547)

HSP 1 Score: 60.077 bits (144), Expect = 1.343e-9
Identity = 34/100 (34.00%), Postives = 53/100 (53.00%), Query Frame = 2
Query:  185 CFQVKVNPSGALSSLVYMCKAIASWHVCCQHFLKCQSDLRFL*YNFFC*HV*EIRSEDLHNEVCQVLHGYKQMLRNGAWDQCMSALEPPIKEKL-SKYQV 481
            C  VKVNPS  +SS+ ++C AIASW                           ++ ++ + +E  +VL GYK ML   +W++C+S L+P  KE+L ++YQV
Sbjct:  474 CEMVKVNPSRYVSSVAFICLAIASWK--------------------------DMENKVIQSEFSKVLIGYKNMLGKNSWEECLSVLDPLAKERLAARYQV 547          
The following BLAST results are available for this feature:
BLAST of GT626719 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Lens culinaris unigene v1 vs Trembl)
Total hits: 10
Match NameE-valueIdentityDescription
Q8GTE6_CICAR2.839e-3070.71Transportin-like protein (Fragment) OS=Cicer ariet... [more]
D7U509_VITVI5.354e-2966.67Whole genome shotgun sequence of line PN40024, sca... [more]
A5BTV3_VITVI3.470e-2867.71Putative uncharacterized protein OS=Vitis vinifera... [more]
B9HR27_POPTR1.458e-2664.65Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]
B9H1L0_POPTR3.248e-2663.64Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]
D7L890_ARALY9.472e-1850.51Protein transporter OS=Arabidopsis lyrata subsp. l... [more]
Q8H2D6_ARATH2.110e-1749.49Transportin OS=Arabidopsis thaliana GN=TRN1 PE=2 S... [more]
Q8H0U4_ARATH2.110e-1749.49At2g16950 OS=Arabidopsis thaliana GN=At2g16950 PE=... [more]
Q8H0P3_ORYSA2.333e-1633.96Transportin (Fragment) OS=Oryza sativa GN=trn1 PE=... [more]
B9FDR3_ORYSJ2.333e-1633.96Putative uncharacterized protein OS=Oryza sativa s... [more]
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BLAST of GT626719 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Lens culinaris unigene v1 vs TAIR 10 peptide)
Total hits: 4
Match NameE-valueIdentityDescription
AT2G16950.21.431e-1949.49| Symbols: TRN1, ATTRN1 | transportin 1 | chr2:735... [more]
AT2G16950.11.431e-1949.49| Symbols: TRN1, ATTRN1 | transportin 1 | chr2:735... [more]
AT2G16960.21.343e-934.00| Symbols: | ARM repeat superfamily protein | chr... [more]
AT2G16960.11.343e-934.00| Symbols: | ARM repeat superfamily protein | chr... [more]
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Properties
Property NameValue
Singlet in analysisLens culinaris unigene v1
Sequences
The following sequences are available for this feature:

EST sequence

>GT626719 ID=GT626719; Name=GT626719; organism=Lens culinaris; type=EST; length=692bp
CTTGGATAGACCCTGATGTAATATTCAAATTTGAACCAAGTCTAACTCAA
CTCTTCAAACCAACTTACAAGGTGGGGGATGTCTCTCACTTAGAGGTCTA
TGTGCTATGGTAGGCTCCCCTTTTAACACAAATAACTCTATACTCGTAGA
CCATTCATGCAATCAATGCTTTACAATTTCTGATTGTTTTCAGGTCAAAG
TCAATCCTTCTGGAGCTCTCAGTTCTCTTGTTTACATGTGTAAAGCTATT
GCAAGTTGGCATGTATGTTGCCAGCATTTTCTCAAATGTCAAAGTGATTT
ACGATTTCTGTAATATAATTTCTTTTGTTGACATGTATAGGAAATAAGGA
GTGAAGATTTACACAATGAAGTCTGCCAGGTCTTGCATGGTTACAAACAG
ATGCTGCGCAATGGAGCATGGGACCAGTGTATGTCTGCTTTGGAGCCGCC
AATAAAAGAAAAGCTTTCAAAATATCAAGTATAATTTGATTGAGTGGGCA
CTGTATCTGCATTGGCCTTGGTCATTTTGTGTTGTCAAGCAATCTCAGAG
TCACGATTCATATTGAACAGGAGCTTAGTCTTGGTCCAATTTTATCGGTC
AGGGTTATCAGTATTTATACAATTCGTTGAACTTGGTGATTACAGGCAGT
TCCACCAGCCTTCAAGGTCTCATTTGATGGTGTTTCCTATGA
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