GT619950

EST Overview
NameGT619950
Unique NameGT619950
TypeEST
OrganismLens culinaris (lentil)
Sequence length704
Unigenes
This EST is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Lens culinaris unigene v1Lens culinaris unigene v1EST
Libraries
Library NameType
LIBEST_025390 LCUSE1NGcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
Lens culinaris unigene v12010-12-27
Homology Analysis: Lens culinaris unigene v1 vs Trembl2010-12-28
Homology Analysis: Lens culinaris unigene v1 vs TAIR 10 peptide2011-02-03
InterProScan analysis for Lens culinaris unigene v12011-01-06
Homology
[Close]
BLAST of GT619950 vs. TrEMBL
Match: D7L0U0_ARALY (Transducin family protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_479673 PE=4 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.452e-10
Identity = 30/40 (75.00%), Postives = 37/40 (92.50%), Query Frame = 1 
Query:  583 TRNADHKVRFWDYQLKQKLGQATKQLTVPNVKAMRMNDDV 702
            T +ADH+V+FWDYQ+KQK G+ATKQLTV NVK+M+MNDDV
Sbjct:  504 TVSADHEVKFWDYQVKQKSGKATKQLTVSNVKSMKMNDDV 543
[Close]
BLAST of GT619950 vs. TrEMBL
Match: Q9LVF2_ARATH (Genomic DNA, chromosome 3, P1 clone: MIL23 OS=Arabidopsis thaliana GN=At3g21540 PE=4 SV=1)

HSP 1 Score: 65.0846 bits (157), Expect = 6.309e-9
Identity = 28/40 (70.00%), Postives = 37/40 (92.50%), Query Frame = 1 
Query:  583 TRNADHKVRFWDYQLKQKLGQATKQLTVPNVKAMRMNDDV 702
            T +ADH+V+FW+YQ+KQK G+ATK+LTV NVK+M+MNDDV
Sbjct:  504 TVSADHEVKFWEYQVKQKSGKATKKLTVSNVKSMKMNDDV 543
[Close]
BLAST of GT619950 vs. TAIR peptide
Match: AT3G21540.1 (| Symbols: | transducin family protein / WD-40 repeat family protein | chr3:7586100-7590856 REVERSE LENGTH=955)

HSP 1 Score: 65.0846 bits (157), Expect = 4.300e-11
Identity = 28/40 (70.00%), Postives = 37/40 (92.50%), Query Frame = 1 
Query:  583 TRNADHKVRFWDYQLKQKLGQATKQLTVPNVKAMRMNDDV 702
            T +ADH+V+FW+YQ+KQK G+ATK+LTV NVK+M+MNDDV
Sbjct:  504 TVSADHEVKFWEYQVKQKSGKATKKLTVSNVKSMKMNDDV 543
The following BLAST results are available for this feature:
BLAST of GT619950 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Lens culinaris unigene v1 vs Trembl)
Total hits: 2
Match NameE-valueIdentityDescription
D7L0U0_ARALY7.452e-1075.00Transducin family protein OS=Arabidopsis lyrata su... [more]
Q9LVF2_ARATH6.309e-970.00Genomic DNA, chromosome 3, P1 clone: MIL23 OS=Arab... [more]
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BLAST of GT619950 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Lens culinaris unigene v1 vs TAIR 10 peptide)
Total hits: 1
Match NameE-valueIdentityDescription
AT3G21540.14.300e-1170.00| Symbols: | transducin family protein / WD-40 re... [more]
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InterPro
Analysis Name: InterProScan analysis for Lens culinaris unigene v1
Date Performed: 2011-01-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSEGsegsegcoord: 36..49
score
NoneNo IPR availableSEGsegsegcoord: 16..27
score
NoneNo IPR availableSEGsegsegcoord: 15..28
score: NAcoord: 30..49
score: NAcoord: 54..71
score

Properties
Property NameValue
Singlet in analysisLens culinaris unigene v1
Sequences
The following sequences are available for this feature:

EST sequence

>GT619950 ID=GT619950; Name=GT619950; organism=Lens culinaris; type=EST; length=704bp
CGAGGGGTTTCGAGCTGGCAAAATCGGTGGCGGTTTGGACGACGATGAAG
AGTTCGAATGGATGTGCTTCGATGATGTGCAAATTGTTTTTTTTTCTTTC
AAAGAATCTGACTTACTTAGAGAGTCCTTATTTCTGTCTTTATTGTTGGG
TACAGCTGAGGCCAAAATGCTTACTAATAGCAACTGAAGAAGGCCGCGAG
GAGACCGTTGTGACGTTCTAAGCAGGCCTTTCTTTTAGTGCAGCAGACAC
GGCTTTATTCAGGTGGTTTATACTTTGTCTAGAGGCTAATCCAAACTTTT
ATGATAATGCAGGGAAATACAGTTGAGGAGATTGAAGATGATTCTGAGCA
TAAAAGAAGCGACGGGAGCACTAAGAAGGCATGAGAATCATGGGCTCAAA
CTCTTCACCACATGGCCAGGATGCCTTCCGACAGTGTAGTATCATTTGTT
GGTGTCCTTCTGAATTTTCCATGAAGTTTGTGGATGGTCTTAGAGCAACT
TCAGGAAGTGCTTCATCCATATTGCACCGGCAGTATTTTTCTTCATTTGC
TCCAATGTAACTCCTTTTTCGTCCACCACACGACCAGAAATGCGGATCAC
AAAGTAAGATTTTGGGACTACCAGCTTAAGCAAAAACTTGGTCAAGCTAC
TAAGCAGCTCACTGTGCCCAATGTCAAGGCTATGAGGATGAATGATGATG
TTCT
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