GT624033

EST Overview


Name	GT624033
Unique Name	GT624033
Type	EST
Organism	Lens culinaris (lentil)
Sequence length	773

Unigenes

This EST is part of the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
Lens culinaris unigene v1	Lens culinaris unigene v1	EST

Libraries


Library Name	Type
LIBEST_025390 LCUSE1NG	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
Lens culinaris unigene v1	2010-12-27
Homology Analysis: Lens culinaris unigene v1 vs Trembl	2010-12-28
Homology Analysis: Lens culinaris unigene v1 vs Swissprot	2010-12-28
Homology Analysis: Lens culinaris unigene v1 vs TAIR 10 peptide	2011-02-03
InterProScan analysis for Lens culinaris unigene v1	2011-01-06

Homology

[Close]

BLAST of GT624033 vs. TrEMBL
Match: B0FNP5_ROBPS (Polypyrimidine tract-binding protein-like protein (Fragment) OS=Robinia pseudoacacia PE=2 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 1.286e-56
Identity = 110/121 (90.91%), Postives = 112/121 (92.56%), Query Frame = 2

Query:  410 QVMVGLDGKRLEAESNVLLASIENMQYAVTLDVLHTVFSTFGPIQKIAMFDKNGALQALIQYPDTQTAVAAKEALEGHCIYDGGFCKLHLSYSRHTDLSIKVNNDRSRDYTIPITPVVNLQ 772
            QVMVGLDGKRLE ESNVLLASIENMQYAVTLDVLH VFS FGP+QKIAMFDKNG LQALIQYPD QTAV AKEALEGHCIYDGGFCK H+SYSRHTDLSIKVNNDRSRDYTIP TPVVN Q
Sbjct:   22 QVMVGLDGKRLETESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDIQTAVVAKEALEGHCIYDGGFCKPHISYSRHTDLSIKVNNDRSRDYTIPNTPVVNAQ 142

[Close]

BLAST of GT624033 vs. TrEMBL
Match: C6TJN2_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 1.203e-54
Identity = 109/123 (88.62%), Postives = 112/123 (91.06%), Query Frame = 2

Query:  410 QVMVGLDGKRLEAESNVLLASIENMQYAVTLDVLHTVFSTFGPIQKIAMFDKNGALQALIQYPDTQTAVAAKEALEGHCIYDGGFCKLHLSYSRHTDLSIKVNNDRSRDYTIPIT--PVVNLQ 772
            Q MVGLDGKRLEAESNVLLASIENMQYAVTLDVLH VFS FGP+QKIAMFDKNG LQALIQYPD QTAV AKEALEGHCIYDGGFCKLH+SYSRH+DLSIKVNNDRSRDYTIP    PVVN Q
Sbjct:  229 QPMVGLDGKRLEAESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDIQTAVVAKEALEGHCIYDGGFCKLHISYSRHSDLSIKVNNDRSRDYTIPNVPPPVVNAQ 351

HSP 2 Score: 95.1301 bits (235), Expect = 6.896e-18
Identity = 52/113 (46.02%), Postives = 69/113 (61.06%), Query Frame = 2

Query:  443 EAESNVLLASIENMQYA-VTLDVLHTVFSTFGPIQKIAMFDKNGALQALIQYPDTQTAVAAKEALEGHCI------YDGGFCKLHLSYSRHTDLSIKVNNDRSRDYTIPITPV 760
            +   NVLL +IE      V++DVLH VFS FG + KI  F+K    QAL+Q+ D +TA +AK+AL+G  I         G C L ++YS H+DLS+K  + RSRDYT P  PV
Sbjct:  107 DVAGNVLLVTIEGEDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDAETATSAKDALDGRSIPRYLLPEHMGPCSLKITYSGHSDLSVKFQSHRSRDYTNPYLPV 219

[Close]

BLAST of GT624033 vs. TrEMBL
Match: B9I550_POPTR (Predicted protein (Fragment) OS=Populus trichocarpa GN=POPTRDRAFT_422880 PE=4 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 2.269e-53
Identity = 104/118 (88.14%), Postives = 110/118 (93.22%), Query Frame = 2

Query:  419 VGLDGKRLEAESNVLLASIENMQYAVTLDVLHTVFSTFGPIQKIAMFDKNGALQALIQYPDTQTAVAAKEALEGHCIYDGGFCKLHLSYSRHTDLSIKVNNDRSRDYTIPITPVVNLQ 772
            VGLDGK+LE ESNVLLASIENMQYAVTLDVLH VFS+FGP+QKIAMFDKNG LQALIQYPD QTAV AKEALEGHCIYDGGFCKLHLSYSRH+DLSIKVNNDRSRDYTIP T ++N Q
Sbjct:  223 VGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSSFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHLSYSRHSDLSIKVNNDRSRDYTIPNTVMMNPQ 340

HSP 2 Score: 91.6633 bits (226), Expect = 7.624e-17
Identity = 52/111 (46.85%), Postives = 68/111 (61.26%), Query Frame = 2

Query:  455 NVLLASIENMQYA-VTLDVLHTVFSTFGPIQKIAMFDKNGALQALIQYPDTQTAVAAKEALEGHCIYDG------GFCKLHLSYSRHTDLSIKVNNDRSRDYT---IPITP 757
            NVLL +IE      V++DVLH VFS FG + KI  F+K    QAL+Q+ D +TA +AK AL+G  I         G C L ++YS HTDLS+K  + RSRDYT   +P+ P
Sbjct:  102 NVLLVTIEGADARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDAETASSAKNALDGRNIPSYLLPEHLGPCTLRITYSAHTDLSVKFQSHRSRDYTNANLPVAP 212

[Close]

BLAST of GT624033 vs. TrEMBL
Match: A9PHI7_POPTR (Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 2.269e-53
Identity = 104/118 (88.14%), Postives = 110/118 (93.22%), Query Frame = 2

Query:  419 VGLDGKRLEAESNVLLASIENMQYAVTLDVLHTVFSTFGPIQKIAMFDKNGALQALIQYPDTQTAVAAKEALEGHCIYDGGFCKLHLSYSRHTDLSIKVNNDRSRDYTIPITPVVNLQ 772
            VGLDGK+LE ESNVLLASIENMQYAVTLDVLH VFS+FGP+QKIAMFDKNG LQALIQYPD QTAV AKEALEGHCIYDGGFCKLHLSYSRH+DLSIKVNNDRSRDYTIP T ++N Q
Sbjct:  232 VGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSSFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHLSYSRHSDLSIKVNNDRSRDYTIPNTVMMNPQ 349

HSP 2 Score: 91.6633 bits (226), Expect = 7.624e-17
Identity = 52/111 (46.85%), Postives = 68/111 (61.26%), Query Frame = 2

Query:  455 NVLLASIENMQYA-VTLDVLHTVFSTFGPIQKIAMFDKNGALQALIQYPDTQTAVAAKEALEGHCIYDG------GFCKLHLSYSRHTDLSIKVNNDRSRDYT---IPITP 757
            NVLL +IE      V++DVLH VFS FG + KI  F+K    QAL+Q+ D +TA +AK AL+G  I         G C L ++YS HTDLS+K  + RSRDYT   +P+ P
Sbjct:  111 NVLLVTIEGADARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDAETASSAKNALDGRNIPSYLLPEHLGPCTLRITYSAHTDLSVKFQSHRSRDYTNANLPVAP 221

[Close]

BLAST of GT624033 vs. TrEMBL
Match: B9RIL3_RICCO (Polypyrimidine tract binding protein, putative OS=Ricinus communis GN=RCOM_1580390 PE=4 SV=1)

HSP 1 Score: 211.075 bits (536), Expect = 8.623e-53
Identity = 103/118 (87.29%), Postives = 108/118 (91.53%), Query Frame = 2

Query:  419 VGLDGKRLEAESNVLLASIENMQYAVTLDVLHTVFSTFGPIQKIAMFDKNGALQALIQYPDTQTAVAAKEALEGHCIYDGGFCKLHLSYSRHTDLSIKVNNDRSRDYTIPITPVVNLQ 772
            VGLDGK+LE ESNVLLASIENMQYAVTLDVLH VFS FGP+QKIAMFDKNG LQALIQYPD QTAV AKEALEGHCIYDGGFCKLH+SYSRH+DLSIKVNNDRSRDYTIP   +VN Q
Sbjct:  232 VGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHSDLSIKVNNDRSRDYTIPNPAMVNPQ 349

HSP 2 Score: 93.9745 bits (232), Expect = 1.536e-17
Identity = 53/113 (46.90%), Postives = 68/113 (60.18%), Query Frame = 2

Query:  443 EAESNVLLASIENMQYA-VTLDVLHTVFSTFGPIQKIAMFDKNGALQALIQYPDTQTAVAAKEALEGHCI------YDGGFCKLHLSYSRHTDLSIKVNNDRSRDYTIPITPV 760
            +   NVLL +IE      V++DVLH VFS FG + KI  F+K    QAL+Q+ D +TA +AK AL+G  I         G C L ++YS HTDLS+K  + RSRDYT P  PV
Sbjct:  107 DVAGNVLLVTIEGADARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDAETASSAKNALDGRNIPRYLLPEHIGPCTLRITYSAHTDLSVKFQSHRSRDYTNPNLPV 219

[Close]

BLAST of GT624033 vs. TrEMBL
Match: B9IDY5_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_1100818 PE=4 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 5.589e-52
Identity = 102/118 (86.44%), Postives = 107/118 (90.68%), Query Frame = 2

Query:  419 VGLDGKRLEAESNVLLASIENMQYAVTLDVLHTVFSTFGPIQKIAMFDKNGALQALIQYPDTQTAVAAKEALEGHCIYDGGFCKLHLSYSRHTDLSIKVNNDRSRDYTIPITPVVNLQ 772
            +GLDGK+LE ESNVLLASIENMQYAVTLDVLH VFS+FGP+QKIAMFDKN  LQALIQYPD QTAV AKEALEGHCIYDGGFCKLHLSYSRH DLSIKVNNDRSRDYTIP   +VN Q
Sbjct:  232 MGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSSFGPVQKIAMFDKNSGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHLSYSRHNDLSIKVNNDRSRDYTIPNNVMVNPQ 349

HSP 2 Score: 93.2041 bits (230), Expect = 2.620e-17
Identity = 54/113 (47.79%), Postives = 69/113 (61.06%), Query Frame = 2

Query:  443 EAESNVLLASIENMQYA-VTLDVLHTVFSTFGPIQKIAMFDKNGALQALIQYPDTQTAVAAKEALEGHCIYDG------GFCKLHLSYSRHTDLSIKVNNDRSRDYTIPITPV 760
            +A  NVLL +IE      V++DVLH VFS FG + KI  F+K    QAL+Q+ D +TA +AK AL+G  I         G C L ++YS HTDLS+K  + RSRDYT P  PV
Sbjct:  107 DAGGNVLLITIEGADARLVSIDVLHLVFSAFGFVHKITTFEKMDRFQALVQFSDVETASSAKNALDGRNIPSYLLPEHLGPCTLRIAYSGHTDLSVKFQSHRSRDYTNPNLPV 219

[Close]

BLAST of GT624033 vs. TrEMBL
Match: D7MSV2_ARALY (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_495390 PE=4 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 1.377e-50
Identity = 98/117 (83.76%), Postives = 106/117 (90.60%), Query Frame = 2

Query:  410 QVMVGLDGKRLEAESNVLLASIENMQYAVTLDVLHTVFSTFGPIQKIAMFDKNGALQALIQYPDTQTAVAAKEALEGHCIYDGGFCKLHLSYSRHTDLSIKVNNDRSRDYTIPITPV 760
            QV VG+DGK++E ESNVLLASIENMQYAVTLDVLH VF+ FG +QKIAMFDKNG LQALIQY D QTAV AKEALEGHCIYDGGFCKLH++YSRHTDLSIKVNNDRSRDYT+P  PV
Sbjct:  229 QVAVGVDGKKMEPESNVLLASIENMQYAVTLDVLHMVFAAFGDVQKIAMFDKNGGLQALIQYKDVQTAVVAKEALEGHCIYDGGFCKLHITYSRHTDLSIKVNNDRSRDYTMPNPPV 345

HSP 2 Score: 93.9745 bits (232), Expect = 1.536e-17
Identity = 50/109 (45.87%), Postives = 67/109 (61.47%), Query Frame = 2

Query:  455 NVLLASIENMQYA-VTLDVLHTVFSTFGPIQKIAMFDKNGALQALIQYPDTQTAVAAKEALEGHCI------YDGGFCKLHLSYSRHTDLSIKVNNDRSRDYTIPITPV 760
            NVLL ++E      V++DVLH VFS FG + KI  F+K    QAL+Q+ D +TA +AK AL+G  I         G C L ++YS HTDL++K  + RSRDYT P  P+
Sbjct:  111 NVLLVTVEGEDARMVSIDVLHLVFSAFGFVHKITTFEKTAGYQALVQFSDEETATSAKNALDGRSIPRYLLAEQVGQCSLKITYSAHTDLTVKFQSHRSRDYTNPYLPI 219

[Close]

BLAST of GT624033 vs. TrEMBL
Match: A5ALP2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_013673 PE=4 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 1.798e-50
Identity = 96/114 (84.21%), Postives = 104/114 (91.23%), Query Frame = 2

Query:  410 QVMVGLDGKRLEAESNVLLASIENMQYAVTLDVLHTVFSTFGPIQKIAMFDKNGALQALIQYPDTQTAVAAKEALEGHCIYDGGFCKLHLSYSRHTDLSIKVNNDRSRDYTIPI 751
            Q  +G DG+++E ESNVLLASIENMQYAVTLDVLH VFS FGPIQKIAMFDKNG +QALIQYPD QTA+ AKEALEGHCIYDGGFCKLH+SYSRHTDLSIKVNNDRSRDYT P+
Sbjct:  538 QFSMGFDGRKVEPESNVLLASIENMQYAVTLDVLHMVFSAFGPIQKIAMFDKNGGVQALIQYPDVQTAIVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTSPV 651

HSP 2 Score: 95.9005 bits (237), Expect = 4.043e-18
Identity = 53/115 (46.09%), Postives = 70/115 (60.87%), Query Frame = 2

Query:  443 EAESNVLLASIENMQYA-VTLDVLHTVFSTFGPIQKIAMFDKNGALQALIQYPDTQTAVAAKEALEGHCI------YDGGFCKLHLSYSRHTDLSIKVNNDRSRDYTIPITPVVN 766
            +   NVLL +IE      V++DVLH VFS FG + KI  F+K    QAL+Q+ D++TA AAK AL+G  I         G C L +++S HTDLS+K  + RSRDYT P  PV +
Sbjct:  416 DVAGNVLLVTIEGADARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDSETASAAKNALDGRSIPRYLLPEHLGPCTLRITFSAHTDLSVKFQSHRSRDYTNPYLPVAS 530

[Close]

BLAST of GT624033 vs. TrEMBL
Match: Q0WQ48_ARATH (Polypyrimidine tract-binding RNA transport protein-like OS=Arabidopsis thaliana GN=At5g53180 PE=2 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 3.067e-50
Identity = 97/117 (82.91%), Postives = 106/117 (90.60%), Query Frame = 2

Query:  410 QVMVGLDGKRLEAESNVLLASIENMQYAVTLDVLHTVFSTFGPIQKIAMFDKNGALQALIQYPDTQTAVAAKEALEGHCIYDGGFCKLHLSYSRHTDLSIKVNNDRSRDYTIPITPV 760
            QV VG+DGK++E ESNVLLASIENMQYAVTLDVLH VF+ FG +QKIAMFDKNG +QALIQY D QTAV AKEALEGHCIYDGGFCKLH++YSRHTDLSIKVNNDRSRDYT+P  PV
Sbjct:  129 QVAVGVDGKKMEPESNVLLASIENMQYAVTLDVLHMVFAAFGEVQKIAMFDKNGGVQALIQYSDVQTAVVAKEALEGHCIYDGGFCKLHITYSRHTDLSIKVNNDRSRDYTMPNPPV 245

HSP 2 Score: 79.7221 bits (195), Expect = 2.998e-13
Identity = 42/87 (48.28%), Postives = 53/87 (60.92%), Query Frame = 2

Query:  518 VFSTFGPIQKIAMFDKNGALQALIQYPDTQTAVAAKEALEGHCI------YDGGFCKLHLSYSRHTDLSIKVNNDRSRDYTIPITPV 760
            VFS FG + KI  F+K    QAL+Q+ D +TA AAK AL+G  I         G C L ++YS HTDL++K  + RSRDYT P  PV
Sbjct:   33 VFSAFGFVHKITTFEKTAGYQALVQFTDAETATAAKLALDGRSIPRYLLAETVGQCSLKITYSAHTDLTVKFQSHRSRDYTNPYLPV 119

[Close]

BLAST of GT624033 vs. TrEMBL
Match: A9NUM8_PICSI (Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 1.575e-46
Identity = 93/121 (76.86%), Postives = 104/121 (85.95%), Query Frame = 2

Query:  410 QVMVGLDGKRLEAESNVLLASIENMQYAVTLDVLHTVFSTFGPIQKIAMFDKNGALQALIQYPDTQTAVAAKEALEGHCIYDGGFCKLHLSYSRHTDLSIKVNNDRSRDYTIPITPVVNLQ 772
            Q  VG DGKR E ESNVLLASIENMQYAVT+DVL+TVFS FG +QKIA+F+KNG  QALIQYPD  TAV AKEALEGHCIYDGG+CKLHLSYSRHTDL++K NNDRSRDYTIP + ++  Q
Sbjct:  229 QFTVGPDGKRRELESNVLLASIENMQYAVTVDVLNTVFSAFGRVQKIAIFEKNGGFQALIQYPDIATAVLAKEALEGHCIYDGGYCKLHLSYSRHTDLNVKGNNDRSRDYTIPASGMLPAQ 349

HSP 2 Score: 95.1301 bits (235), Expect = 6.896e-18
Identity = 52/113 (46.02%), Postives = 69/113 (61.06%), Query Frame = 2

Query:  443 EAESNVLLASIENMQYA-VTLDVLHTVFSTFGPIQKIAMFDKNGALQALIQYPDTQTAVAAKEALEGHCI------YDGGFCKLHLSYSRHTDLSIKVNNDRSRDYTIPITPV 760
            +  SNVLL +IE +    V++DVLH VFS FG + KIA F+K    QAL+Q+ D  TA +A+ AL+G  I           C L +S+S HTDL++K  + RSRDYT P  PV
Sbjct:  107 DVASNVLLVTIEGVDSGDVSIDVLHLVFSAFGFVHKIATFEKTAGFQALVQFSDADTAASARSALDGRSIPRYLLPEHVASCHLRISFSAHTDLNVKFQSHRSRDYTNPNLPV 219

[Close]

BLAST of GT624033 vs. SwissProt
Match: PTBP2_ARATH (Polypyrimidine tract-binding protein homolog 2 OS=Arabidopsis thaliana GN=At5g53180 PE=2 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 2.000e-51
Identity = 97/117 (82.91%), Postives = 106/117 (90.60%), Query Frame = 2

Query:  410 QVMVGLDGKRLEAESNVLLASIENMQYAVTLDVLHTVFSTFGPIQKIAMFDKNGALQALIQYPDTQTAVAAKEALEGHCIYDGGFCKLHLSYSRHTDLSIKVNNDRSRDYTIPITPV 760
            QV VG+DGK++E ESNVLLASIENMQYAVTLDVLH VF+ FG +QKIAMFDKNG +QALIQY D QTAV AKEALEGHCIYDGGFCKLH++YSRHTDLSIKVNNDRSRDYT+P  PV
Sbjct:  229 QVAVGVDGKKMEPESNVLLASIENMQYAVTLDVLHMVFAAFGEVQKIAMFDKNGGVQALIQYSDVQTAVVAKEALEGHCIYDGGFCKLHITYSRHTDLSIKVNNDRSRDYTMPNPPV 345

HSP 2 Score: 94.3597 bits (233), Expect = 7.670e-19
Identity = 53/109 (48.62%), Postives = 67/109 (61.47%), Query Frame = 2

Query:  455 NVLLASIENMQYA-VTLDVLHTVFSTFGPIQKIAMFDKNGALQALIQYPDTQTAVAAKEALEGHCI------YDGGFCKLHLSYSRHTDLSIKVNNDRSRDYTIPITPV 760
            NVLL +IE      V++DVLH VFS FG + KI  F+K    QAL+Q+ D +TA AAK AL+G  I         G C L ++YS HTDL++K  + RSRDYT P  PV
Sbjct:  111 NVLLVTIEGDDARMVSIDVLHLVFSAFGFVHKITTFEKTAGYQALVQFTDAETATAAKLALDGRSIPRYLLAETVGQCSLKITYSAHTDLTVKFQSHRSRDYTNPYLPV 219

[Close]

BLAST of GT624033 vs. SwissProt
Match: PTBP1_ARATH (Polypyrimidine tract-binding protein homolog 1 OS=Arabidopsis thaliana GN=PTB PE=2 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 2.216e-42
Identity = 80/113 (70.80%), Postives = 97/113 (85.84%), Query Frame = 2

Query:  410 QVMVGLDGKRLEAESNVLLASIENMQYAVTLDVLHTVFSTFGPIQKIAMFDKNGALQALIQYPDTQTAVAAKEALEGHCIYDGGFCKLHLSYSRHTDLSIKVNNDRSRDYTIP 748
            Q  +G DGK++E++SNVLL  IENMQYAVT+DVLHTVFS +G +QKIA+F+KNG+ QALIQY D  TA  AKEALEGHCIYDGG+CKL LSYSRHTDL++K  +D+SRDYT+P
Sbjct:  228 QPALGADGKKVESQSNVLLGLIENMQYAVTVDVLHTVFSAYGTVQKIAIFEKNGSTQALIQYSDIPTAAMAKEALEGHCIYDGGYCKLRLSYSRHTDLNVKAFSDKSRDYTLP 340

HSP 2 Score: 98.9821 bits (245), Expect = 3.114e-20
Identity = 53/113 (46.90%), Postives = 71/113 (62.83%), Query Frame = 2

Query:  443 EAESNVLLASIENMQ-YAVTLDVLHTVFSTFGPIQKIAMFDKNGALQALIQYPDTQTAVAAKEALEGHCI------YDGGFCKLHLSYSRHTDLSIKVNNDRSRDYTIPITPV 760
            +   NVLL + E ++ + V++DV+H VFS FG + KIA F+K    QAL+Q+ D +TA AA+ AL+G  I         G C L +SYS HTDL+IK  + RSRDYT P  PV
Sbjct:  106 DVPGNVLLVTFEGVESHEVSIDVIHLVFSAFGFVHKIATFEKAAGFQALVQFTDVETASAARSALDGRSIPRYLLSAHVGSCSLRMSYSAHTDLNIKFQSHRSRDYTNPYLPV 218

[Close]

BLAST of GT624033 vs. SwissProt
Match: PTBP2_RAT (Polypyrimidine tract-binding protein 2 OS=Rattus norvegicus GN=Ptbp2 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.384e-20
Identity = 53/104 (50.96%), Postives = 67/104 (64.42%), Query Frame = 2

Query:  446 AESNVLLASIENMQYAVTLDVLHTVFSTFGPIQKIAMFDKNGALQALIQYPDTQTAVAAKEALEGHCIYDGGFCKLHLSYSRHTDLSIKVNNDRSRDYTIPITP 757
            A+S VL   I+NM Y VTLDVLH +FS FG + KI  F KN   QAL+QY D   A  AK AL+G  IY+   C L + +S+  +L++K NND+SRDYT P  P
Sbjct:  176 AQSPVLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQAKLALDGQNIYN-ACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLP 278

[Close]

BLAST of GT624033 vs. SwissProt
Match: PTBP2_MOUSE (Polypyrimidine tract-binding protein 2 OS=Mus musculus GN=Ptbp2 PE=1 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 2.384e-20
Identity = 53/104 (50.96%), Postives = 67/104 (64.42%), Query Frame = 2

Query:  446 AESNVLLASIENMQYAVTLDVLHTVFSTFGPIQKIAMFDKNGALQALIQYPDTQTAVAAKEALEGHCIYDGGFCKLHLSYSRHTDLSIKVNNDRSRDYTIPITP 757
            A+S VL   I+NM Y VTLDVLH +FS FG + KI  F KN   QAL+QY D   A  AK AL+G  IY+   C L + +S+  +L++K NND+SRDYT P  P
Sbjct:  176 AQSPVLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQAKLALDGQNIYN-ACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLP 278

[Close]

BLAST of GT624033 vs. SwissProt
Match: PTBP2_HUMAN (Polypyrimidine tract-binding protein 2 OS=Homo sapiens GN=PTBP2 PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.384e-20
Identity = 53/104 (50.96%), Postives = 67/104 (64.42%), Query Frame = 2

Query:  446 AESNVLLASIENMQYAVTLDVLHTVFSTFGPIQKIAMFDKNGALQALIQYPDTQTAVAAKEALEGHCIYDGGFCKLHLSYSRHTDLSIKVNNDRSRDYTIPITP 757
            A+S VL   I+NM Y VTLDVLH +FS FG + KI  F KN   QAL+QY D   A  AK AL+G  IY+   C L + +S+  +L++K NND+SRDYT P  P
Sbjct:  176 AQSPVLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQAKLALDGQNIYN-ACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLP 278

[Close]

BLAST of GT624033 vs. SwissProt
Match: PTBP1_RAT (Polypyrimidine tract-binding protein 1 OS=Rattus norvegicus GN=Ptbp1 PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.384e-20
Identity = 52/109 (47.71%), Postives = 69/109 (63.30%), Query Frame = 2

Query:  431 GKRLEAESNVLLASIENMQYAVTLDVLHTVFSTFGPIQKIAMFDKNGALQALIQYPDTQTAVAAKEALEGHCIYDGGFCKLHLSYSRHTDLSIKVNNDRSRDYTIPITP 757
            G  +  +S VL   +EN+ Y VTLDVLH +FS FG + KI  F KN   QAL+QY D  +A  AK +L+G  IY+   C L + +S+ T L++K NND+SRDYT P  P
Sbjct:  173 GMAMAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYN-ACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLP 280

[Close]

BLAST of GT624033 vs. SwissProt
Match: PTBP1_PIG (Polypyrimidine tract-binding protein 1 OS=Sus scrofa GN=PTBP1 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.384e-20
Identity = 52/109 (47.71%), Postives = 69/109 (63.30%), Query Frame = 2

Query:  431 GKRLEAESNVLLASIENMQYAVTLDVLHTVFSTFGPIQKIAMFDKNGALQALIQYPDTQTAVAAKEALEGHCIYDGGFCKLHLSYSRHTDLSIKVNNDRSRDYTIPITP 757
            G  +  +S VL   +EN+ Y VTLDVLH +FS FG + KI  F KN   QAL+QY D  +A  AK +L+G  IY+   C L + +S+ T L++K NND+SRDYT P  P
Sbjct:  174 GMAMAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYN-ACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLP 281

[Close]

BLAST of GT624033 vs. SwissProt
Match: PTBP1_MOUSE (Polypyrimidine tract-binding protein 1 OS=Mus musculus GN=Ptbp1 PE=1 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 2.384e-20
Identity = 52/109 (47.71%), Postives = 69/109 (63.30%), Query Frame = 2

Query:  431 GKRLEAESNVLLASIENMQYAVTLDVLHTVFSTFGPIQKIAMFDKNGALQALIQYPDTQTAVAAKEALEGHCIYDGGFCKLHLSYSRHTDLSIKVNNDRSRDYTIPITP 757
            G  +  +S VL   +EN+ Y VTLDVLH +FS FG + KI  F KN   QAL+QY D  +A  AK +L+G  IY+   C L + +S+ T L++K NND+SRDYT P  P
Sbjct:  173 GMAMAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYN-ACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLP 280

[Close]

BLAST of GT624033 vs. SwissProt
Match: PTBP1_HUMAN (Polypyrimidine tract-binding protein 1 OS=Homo sapiens GN=PTBP1 PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.384e-20
Identity = 52/109 (47.71%), Postives = 69/109 (63.30%), Query Frame = 2

Query:  431 GKRLEAESNVLLASIENMQYAVTLDVLHTVFSTFGPIQKIAMFDKNGALQALIQYPDTQTAVAAKEALEGHCIYDGGFCKLHLSYSRHTDLSIKVNNDRSRDYTIPITP 757
            G  +  +S VL   +EN+ Y VTLDVLH +FS FG + KI  F KN   QAL+QY D  +A  AK +L+G  IY+   C L + +S+ T L++K NND+SRDYT P  P
Sbjct:  174 GMAMAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYN-ACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLP 281

[Close]

BLAST of GT624033 vs. SwissProt
Match: PTBP1_BOVIN (Polypyrimidine tract-binding protein 1 OS=Bos taurus GN=PTBP1 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.384e-20
Identity = 52/109 (47.71%), Postives = 69/109 (63.30%), Query Frame = 2

Query:  431 GKRLEAESNVLLASIENMQYAVTLDVLHTVFSTFGPIQKIAMFDKNGALQALIQYPDTQTAVAAKEALEGHCIYDGGFCKLHLSYSRHTDLSIKVNNDRSRDYTIPITP 757
            G  +  +S VL   +EN+ Y VTLDVLH +FS FG + KI  F KN   QAL+QY D  +A  AK +L+G  IY+   C L + +S+ T L++K NND+SRDYT P  P
Sbjct:  174 GMAMAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYN-ACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLP 281

[Close]

BLAST of GT624033 vs. TAIR peptide
Match: AT5G53180.2 (| Symbols: ATPTB2, PTB2 | polypyrimidine tract-binding protein 2 | chr5:21568393-21571081 REVERSE LENGTH=329)

HSP 1 Score: 202.601 bits (514), Expect = 1.996e-52
Identity = 97/117 (82.91%), Postives = 106/117 (90.60%), Query Frame = 2

Query:  410 QVMVGLDGKRLEAESNVLLASIENMQYAVTLDVLHTVFSTFGPIQKIAMFDKNGALQALIQYPDTQTAVAAKEALEGHCIYDGGFCKLHLSYSRHTDLSIKVNNDRSRDYTIPITPV 760
            QV VG+DGK++E ESNVLLASIENMQYAVTLDVLH VF+ FG +QKIAMFDKNG +QALIQY D QTAV AKEALEGHCIYDGGFCKLH++YSRHTDLSIKVNNDRSRDYT+P  PV
Sbjct:  129 QVAVGVDGKKMEPESNVLLASIENMQYAVTLDVLHMVFAAFGEVQKIAMFDKNGGVQALIQYSDVQTAVVAKEALEGHCIYDGGFCKLHITYSRHTDLSIKVNNDRSRDYTMPNPPV 245

HSP 2 Score: 79.7221 bits (195), Expect = 1.952e-15
Identity = 42/87 (48.28%), Postives = 53/87 (60.92%), Query Frame = 2

Query:  518 VFSTFGPIQKIAMFDKNGALQALIQYPDTQTAVAAKEALEGHCI------YDGGFCKLHLSYSRHTDLSIKVNNDRSRDYTIPITPV 760
            VFS FG + KI  F+K    QAL+Q+ D +TA AAK AL+G  I         G C L ++YS HTDL++K  + RSRDYT P  PV
Sbjct:   33 VFSAFGFVHKITTFEKTAGYQALVQFTDAETATAAKLALDGRSIPRYLLAETVGQCSLKITYSAHTDLTVKFQSHRSRDYTNPYLPV 119

[Close]

BLAST of GT624033 vs. TAIR peptide
Match: AT5G53180.1 (| Symbols: ATPTB2, PTB2 | polypyrimidine tract-binding protein 2 | chr5:21568393-21571537 REVERSE LENGTH=429)

HSP 1 Score: 202.601 bits (514), Expect = 1.996e-52
Identity = 97/117 (82.91%), Postives = 106/117 (90.60%), Query Frame = 2

Query:  410 QVMVGLDGKRLEAESNVLLASIENMQYAVTLDVLHTVFSTFGPIQKIAMFDKNGALQALIQYPDTQTAVAAKEALEGHCIYDGGFCKLHLSYSRHTDLSIKVNNDRSRDYTIPITPV 760
            QV VG+DGK++E ESNVLLASIENMQYAVTLDVLH VF+ FG +QKIAMFDKNG +QALIQY D QTAV AKEALEGHCIYDGGFCKLH++YSRHTDLSIKVNNDRSRDYT+P  PV
Sbjct:  229 QVAVGVDGKKMEPESNVLLASIENMQYAVTLDVLHMVFAAFGEVQKIAMFDKNGGVQALIQYSDVQTAVVAKEALEGHCIYDGGFCKLHITYSRHTDLSIKVNNDRSRDYTMPNPPV 345

HSP 2 Score: 94.3597 bits (233), Expect = 7.656e-20
Identity = 53/109 (48.62%), Postives = 67/109 (61.47%), Query Frame = 2

Query:  455 NVLLASIENMQYA-VTLDVLHTVFSTFGPIQKIAMFDKNGALQALIQYPDTQTAVAAKEALEGHCI------YDGGFCKLHLSYSRHTDLSIKVNNDRSRDYTIPITPV 760
            NVLL +IE      V++DVLH VFS FG + KI  F+K    QAL+Q+ D +TA AAK AL+G  I         G C L ++YS HTDL++K  + RSRDYT P  PV
Sbjct:  111 NVLLVTIEGDDARMVSIDVLHLVFSAFGFVHKITTFEKTAGYQALVQFTDAETATAAKLALDGRSIPRYLLAETVGQCSLKITYSAHTDLTVKFQSHRSRDYTNPYLPV 219

[Close]

BLAST of GT624033 vs. TAIR peptide
Match: AT3G01150.2 (| Symbols: PTB | polypyrimidine tract-binding protein 1 | chr3:51732-54344 FORWARD LENGTH=370)

HSP 1 Score: 172.555 bits (436), Expect = 2.212e-43
Identity = 80/113 (70.80%), Postives = 97/113 (85.84%), Query Frame = 2

Query:  410 QVMVGLDGKRLEAESNVLLASIENMQYAVTLDVLHTVFSTFGPIQKIAMFDKNGALQALIQYPDTQTAVAAKEALEGHCIYDGGFCKLHLSYSRHTDLSIKVNNDRSRDYTIP 748
            Q  +G DGK++E++SNVLL  IENMQYAVT+DVLHTVFS +G +QKIA+F+KNG+ QALIQY D  TA  AKEALEGHCIYDGG+CKL LSYSRHTDL++K  +D+SRDYT+P
Sbjct:  199 QPALGADGKKVESQSNVLLGLIENMQYAVTVDVLHTVFSAYGTVQKIAIFEKNGSTQALIQYSDIPTAAMAKEALEGHCIYDGGYCKLRLSYSRHTDLNVKAFSDKSRDYTLP 311

HSP 2 Score: 62.7734 bits (151), Expect = 2.469e-10
Identity = 33/67 (49.25%), Postives = 42/67 (62.69%), Query Frame = 2

Query:  578 QALIQYPDTQTAVAAKEALEGHCI------YDGGFCKLHLSYSRHTDLSIKVNNDRSRDYTIPITPV 760
            +AL+Q+ D +TA AA+ AL+G  I         G C L +SYS HTDL+IK  + RSRDYT P  PV
Sbjct:  123 EALVQFTDVETASAARSALDGRSIPRYLLSAHVGSCSLRMSYSAHTDLNIKFQSHRSRDYTNPYLPV 189

[Close]

BLAST of GT624033 vs. TAIR peptide
Match: AT3G01150.1 (| Symbols: PTB, ATPTB1, PTB1 | polypyrimidine tract-binding protein 1 | chr3:51732-54344 FORWARD LENGTH=399)

HSP 1 Score: 172.555 bits (436), Expect = 2.212e-43
Identity = 80/113 (70.80%), Postives = 97/113 (85.84%), Query Frame = 2

Query:  410 QVMVGLDGKRLEAESNVLLASIENMQYAVTLDVLHTVFSTFGPIQKIAMFDKNGALQALIQYPDTQTAVAAKEALEGHCIYDGGFCKLHLSYSRHTDLSIKVNNDRSRDYTIP 748
            Q  +G DGK++E++SNVLL  IENMQYAVT+DVLHTVFS +G +QKIA+F+KNG+ QALIQY D  TA  AKEALEGHCIYDGG+CKL LSYSRHTDL++K  +D+SRDYT+P
Sbjct:  228 QPALGADGKKVESQSNVLLGLIENMQYAVTVDVLHTVFSAYGTVQKIAIFEKNGSTQALIQYSDIPTAAMAKEALEGHCIYDGGYCKLRLSYSRHTDLNVKAFSDKSRDYTLP 340

HSP 2 Score: 98.9821 bits (245), Expect = 3.109e-21
Identity = 53/113 (46.90%), Postives = 71/113 (62.83%), Query Frame = 2

Query:  443 EAESNVLLASIENMQ-YAVTLDVLHTVFSTFGPIQKIAMFDKNGALQALIQYPDTQTAVAAKEALEGHCI------YDGGFCKLHLSYSRHTDLSIKVNNDRSRDYTIPITPV 760
            +   NVLL + E ++ + V++DV+H VFS FG + KIA F+K    QAL+Q+ D +TA AA+ AL+G  I         G C L +SYS HTDL+IK  + RSRDYT P  PV
Sbjct:  106 DVPGNVLLVTFEGVESHEVSIDVIHLVFSAFGFVHKIATFEKAAGFQALVQFTDVETASAARSALDGRSIPRYLLSAHVGSCSLRMSYSAHTDLNIKFQSHRSRDYTNPYLPV 218

[Close]

BLAST of GT624033 vs. TAIR peptide
Match: AT1G43190.3 (| Symbols: PTB3 | polypyrimidine tract-binding protein 3 | chr1:16275432-16278185 REVERSE LENGTH=430)

HSP 1 Score: 98.2117 bits (243), Expect = 5.302e-21
Identity = 49/107 (45.79%), Postives = 69/107 (64.49%), Query Frame = 2

Query:  437 RLEAESNVLLASIENMQYAVTLDVLHTVFSTFGPIQKIAMFDKNGALQALIQYPDTQTAVAAKEALEGHCIYDGGFCKLHLSYSRHTDLSIKVNNDRSRDYTIPITP 757
            R +  + +LL +I +M Y +T+DVLH VFS +G ++K+  F K+   QALIQY   Q A +A+ AL+G  IYD G C+L + +S   +L +  NNDRSRDYT P  P
Sbjct:   91 REDEPNRILLVTIHHMLYPITVDVLHQVFSPYGFVEKLVTFQKSAGFQALIQYQVQQCAASARTALQGRNIYD-GCCQLDIQFSNLEELQVNYNNDRSRDYTNPNLP 196

[Close]

BLAST of GT624033 vs. TAIR peptide
Match: AT1G43190.2 (| Symbols: PTB3 | polypyrimidine tract-binding protein 3 | chr1:16275432-16278185 REVERSE LENGTH=432)

HSP 1 Score: 98.2117 bits (243), Expect = 5.302e-21
Identity = 49/107 (45.79%), Postives = 69/107 (64.49%), Query Frame = 2

Query:  437 RLEAESNVLLASIENMQYAVTLDVLHTVFSTFGPIQKIAMFDKNGALQALIQYPDTQTAVAAKEALEGHCIYDGGFCKLHLSYSRHTDLSIKVNNDRSRDYTIPITP 757
            R +  + +LL +I +M Y +T+DVLH VFS +G ++K+  F K+   QALIQY   Q A +A+ AL+G  IYD G C+L + +S   +L +  NNDRSRDYT P  P
Sbjct:   93 REDEPNRILLVTIHHMLYPITVDVLHQVFSPYGFVEKLVTFQKSAGFQALIQYQVQQCAASARTALQGRNIYD-GCCQLDIQFSNLEELQVNYNNDRSRDYTNPNLP 198

[Close]

BLAST of GT624033 vs. TAIR peptide
Match: AT1G43190.1 (| Symbols: PTB3 | polypyrimidine tract-binding protein 3 | chr1:16275432-16278185 REVERSE LENGTH=432)

HSP 1 Score: 98.2117 bits (243), Expect = 5.302e-21
Identity = 49/107 (45.79%), Postives = 69/107 (64.49%), Query Frame = 2

Query:  437 RLEAESNVLLASIENMQYAVTLDVLHTVFSTFGPIQKIAMFDKNGALQALIQYPDTQTAVAAKEALEGHCIYDGGFCKLHLSYSRHTDLSIKVNNDRSRDYTIPITP 757
            R +  + +LL +I +M Y +T+DVLH VFS +G ++K+  F K+   QALIQY   Q A +A+ AL+G  IYD G C+L + +S   +L +  NNDRSRDYT P  P
Sbjct:   93 REDEPNRILLVTIHHMLYPITVDVLHQVFSPYGFVEKLVTFQKSAGFQALIQYQVQQCAASARTALQGRNIYD-GCCQLDIQFSNLEELQVNYNNDRSRDYTNPNLP 198

The following BLAST results are available for this feature:

BLAST of GT624033 vs. TrEMBL
BLAST of GT624033 vs. SwissProt
BLAST of GT624033 vs. TAIR peptide

BLAST of GT624033 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Lens culinaris unigene v1 vs Trembl)
Total hits: 10


Match Name	E-value	Identity	Description
B0FNP5_ROBPS	1.286e-56	90.91	Polypyrimidine tract-binding protein-like protein ...	[more]
C6TJN2_SOYBN	1.203e-54	88.62	Putative uncharacterized protein OS=Glycine max PE...	[more]
B9I550_POPTR	2.269e-53	88.14	Predicted protein (Fragment) OS=Populus trichocarp...	[more]
A9PHI7_POPTR	2.269e-53	88.14	Putative uncharacterized protein OS=Populus tricho...	[more]
B9RIL3_RICCO	8.623e-53	87.29	Polypyrimidine tract binding protein, putative OS=...	[more]
B9IDY5_POPTR	5.589e-52	86.44	Predicted protein OS=Populus trichocarpa GN=POPTRD...	[more]
D7MSV2_ARALY	1.377e-50	83.76	Putative uncharacterized protein OS=Arabidopsis ly...	[more]
A5ALP2_VITVI	1.798e-50	84.21	Putative uncharacterized protein OS=Vitis vinifera...	[more]
Q0WQ48_ARATH	3.067e-50	82.91	Polypyrimidine tract-binding RNA transport protein...	[more]
A9NUM8_PICSI	1.575e-46	76.86	Putative uncharacterized protein OS=Picea sitchens...	[more]

BLAST of GT624033 vs. SwissProt
Analysis Date: 2010-12-28 (Homology Analysis: Lens culinaris unigene v1 vs Swissprot)
Total hits: 10


Match Name	E-value	Identity	Description
PTBP2_ARATH	2.000e-51	82.91	Polypyrimidine tract-binding protein homolog 2 OS=...	[more]
PTBP1_ARATH	2.216e-42	70.80	Polypyrimidine tract-binding protein homolog 1 OS=...	[more]
PTBP2_RAT	2.384e-20	50.96	Polypyrimidine tract-binding protein 2 OS=Rattus n...	[more]
PTBP2_MOUSE	2.384e-20	50.96	Polypyrimidine tract-binding protein 2 OS=Mus musc...	[more]
PTBP2_HUMAN	2.384e-20	50.96	Polypyrimidine tract-binding protein 2 OS=Homo sap...	[more]
PTBP1_RAT	2.384e-20	47.71	Polypyrimidine tract-binding protein 1 OS=Rattus n...	[more]
PTBP1_PIG	2.384e-20	47.71	Polypyrimidine tract-binding protein 1 OS=Sus scro...	[more]
PTBP1_MOUSE	2.384e-20	47.71	Polypyrimidine tract-binding protein 1 OS=Mus musc...	[more]
PTBP1_HUMAN	2.384e-20	47.71	Polypyrimidine tract-binding protein 1 OS=Homo sap...	[more]
PTBP1_BOVIN	2.384e-20	47.71	Polypyrimidine tract-binding protein 1 OS=Bos taur...	[more]

BLAST of GT624033 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Lens culinaris unigene v1 vs TAIR 10 peptide)
Total hits: 7


Match Name	E-value	Identity	Description
AT5G53180.2	1.996e-52	82.91	\| Symbols: ATPTB2, PTB2 \| polypyrimidine tract-bin...	[more]
AT5G53180.1	1.996e-52	82.91	\| Symbols: ATPTB2, PTB2 \| polypyrimidine tract-bin...	[more]
AT3G01150.2	2.212e-43	70.80	\| Symbols: PTB \| polypyrimidine tract-binding prot...	[more]
AT3G01150.1	2.212e-43	70.80	\| Symbols: PTB, ATPTB1, PTB1 \| polypyrimidine trac...	[more]
AT1G43190.3	5.302e-21	45.79	\| Symbols: PTB3 \| polypyrimidine tract-binding pro...	[more]
AT1G43190.2	5.302e-21	45.79	\| Symbols: PTB3 \| polypyrimidine tract-binding pro...	[more]
AT1G43190.1	5.302e-21	45.79	\| Symbols: PTB3 \| polypyrimidine tract-binding pro...	[more]

InterPro

Analysis Name: InterProScan analysis for Lens culinaris unigene v1
Date Performed: 2011-01-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 24..83 score: 7.3
IPR012677	Nucleotide-binding, alpha-beta plait	GENE3D	3.30.70.330	no description	coord: 23..115 score: 2.1
None	No IPR available	PANTHER	PTHR11546	HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN	coord: 3..119 score: 5.4
None	No IPR available	PANTHER	PTHR11546:SF4	POLYPYRIMIDINE TRACT BINDING PROTEIN 1, 2	coord: 3..119 score: 5.4
None	No IPR available	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 13..121 score: 1.5

Properties


Property Name	Value
Singlet in analysis	Lens culinaris unigene v1

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>GT624033 ID=GT624033; Name=GT624033; organism=Lens culinaris; type=EST; length=773bp
CTAATTTCCTTAGTATTTTACCAGCTTGCTTGAAACCATGCTTTGGCAGA
ACTTTTTTAATTTTGTTCTTATGGATATTGGTTTGATGTGTCACCCTTCA
TCAGCTATGATCCCTTTTCCTTTCTATTATGAAAGTAAAAAAATATTAAT
TAGTTATATTTCTTGCTCCAGAGACTATACTAATCCTTACCTTCCTGTTG
CTCAATCAGCTATTGAAGGAGGTGGACAGGTAACGCTTCAACTTGTTTTG
TTTTAAGGGATAGCATATTATATATCTTGTCACTTTATTTGTGCAATTGA
CAACCTCAGAATTGCTTGTTTTAAAAGTCTATCTTCATTCACATCTGTTA
GGTGTTTTCCTTGCATACTGACTTGATTACTGAAATTTTTTATCCATATA
TAACTTTTGCAGGTCATGGTTGGTTTGGATGGGAAAAGACTGGAGGCTGA
GAGTAACGTTCTTCTTGCATCTATTGAGAACATGCAGTATGCTGTAACAT
TGGATGTCTTACATACGGTTTTCTCTACTTTTGGACCTATTCAAAAGATT
GCAATGTTTGATAAGAATGGTGCTTTACAGGCTCTGATTCAATATCCAGA
TACCCAGACAGCTGTAGCGGCCAAAGAAGCCTTGGAAGGGCACTGCATCT
ATGATGGAGGTTTTTGCAAGCTCCACCTCTCATATTCACGTCATACGGAT
CTTAGTATAAAGGTCAATAATGATAGGAGTAGAGACTATACCATTCCTAT
TACACCAGTTGTGAACCTTCAGC

Annotated Terms

The following terms have been associated with this EST:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding
GO:0000166	nucleotide binding

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf

Search form