GT624257

EST Overview


Name	GT624257
Unique Name	GT624257
Type	EST
Organism	Lens culinaris (lentil)
Sequence length	579

Unigenes

This EST is part of the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
Lens culinaris unigene v1	Lens culinaris unigene v1	EST

Libraries


Library Name	Type
LIBEST_025390 LCUSE1NG	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
Lens culinaris unigene v1	2010-12-27
Homology Analysis: Lens culinaris unigene v1 vs Trembl	2010-12-28
Homology Analysis: Lens culinaris unigene v1 vs Swissprot	2010-12-28
Homology Analysis: Lens culinaris unigene v1 vs TAIR 10 peptide	2011-02-03
InterProScan analysis for Lens culinaris unigene v1	2011-01-06

Homology

[Close]

BLAST of GT624257 vs. TrEMBL
Match: B9SJK4_RICCO (Suppressor of ty, putative OS=Ricinus communis GN=RCOM_0138850 PE=4 SV=1)

HSP 1 Score: 254.988 bits (650), Expect = 2.781e-66
Identity = 131/174 (75.29%), Postives = 147/174 (84.48%), Query Frame = 1

Query:    1 AGTPRDSS-AYANAPSPYLPSTPGGQPMTPNSASYLXXXXXXXXXXXXXXXLDVMSPVLGGDNEGPWLMPDILVNVHRAGEES-VGVIKEVLPDGSYRVALGSSGNGETLTALPAEMEAVIPRKSDKIKIMGGALRGSTGKLIGVDGTDGIVKVDDTLDVKILDLVILAKLA*P 516
            AGTPRDSS AYANAPSPYLPSTPGGQPMTP+SA+YL               LDVMSPV+GGDNEGPW MPDILVNV +A ++S +GVI++VL DGS RV LG++GNGET+TALP E+E V+PRKSDKIKIMGGA RG+TGKLIGVDGTDGIVKVDDTLDVKILD+VILAKLA P
Sbjct:  872 AGTPRDSSSAYANAPSPYLPSTPGGQPMTPSSAAYLPGTPGGQPMTPGTGGLDVMSPVIGGDNEGPWYMPDILVNVRKAADDSAIGVIRDVLADGSCRVVLGANGNGETITALPNEIEIVVPRKSDKIKIMGGAHRGATGKLIGVDGTDGIVKVDDTLDVKILDMVILAKLAQP 1045

[Close]

BLAST of GT624257 vs. TrEMBL
Match: B9HRF8_POPTR (Global transcription factor group OS=Populus trichocarpa GN=GTA902 PE=4 SV=1)

HSP 1 Score: 248.44 bits (633), Expect = 2.603e-64
Identity = 126/172 (73.26%), Postives = 144/172 (83.72%), Query Frame = 1

Query:    1 AGTPRDSS-AYANAPSPYLPSTPGGQPMTPNSASYLXXXXXXXXXXXXXXXLDVMSPVLGGDNEGPWLMPDILVNVHRAGEES-VGVIKEVLPDGSYRVALGSSGNGETLTALPAEMEAVIPRKSDKIKIMGGALRGSTGKLIGVDGTDGIVKVDDTLDVKILDLVILAKLA 510
            AGTPRDSS AYANAPSPYLPSTPGGQPMTP+SASYL               LD+MSPV+GGD EGPW +PDILV VHR  +ES VGVI+EVL DGS ++ LG+ GNGET+TALP+E+E V+PRKSDKIKI+GGA RG+TGKLIGVDGTDGIVK++DTLDVKILD+VILAKLA
Sbjct:  869 AGTPRDSSSAYANAPSPYLPSTPGGQPMTPSSASYLPGTPGGQLMTPGTNGLDMMSPVIGGDGEGPWFIPDILVTVHRTADESAVGVIREVLQDGSCKIVLGAHGNGETITALPSEIEMVVPRKSDKIKILGGAHRGATGKLIGVDGTDGIVKLEDTLDVKILDMVILAKLA 1040

[Close]

BLAST of GT624257 vs. TrEMBL
Match: Q69T55_ORYSJ (Os06g0208300 protein OS=Oryza sativa subsp. japonica GN=P0664C05.20 PE=4 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 6.867e-57
Identity = 110/170 (64.71%), Postives = 134/170 (78.82%), Query Frame = 1

Query:    1 AGTPRDSSAYANAPSPYLPSTPGGQPMTPNSASYLXXXXXXXXXXXXXXXLDVMSPVLGGDNEGPWLMPDILVNVHRAGEESVGVIKEVLPDGSYRVALGSSGNGETLTALPAEMEAVIPRKSDKIKIMGGALRGSTGKLIGVDGTDGIVKVDDTLDVKILDLVILAKLA 510
            A TPR+S+ Y NAPSPY+PSTP GQPMTPNSASYL               +D+MSP++GG+ EG WL+PD+LVNV RAG++  GV++EVL DGS RVALGSSGNGE +T LP E+E + P+KSDKIKIM G  RG +GKLIG+DG+DGIVK+DDT +VKILD+VILAKLA
Sbjct:  122 APTPRESN-YGNAPSPYVPSTPVGQPMTPNSASYLPGTPGGQPMTPGNVGMDIMSPIIGGEGEGNWLLPDVLVNVLRAGDDGPGVVREVLADGSCRVALGSSGNGEIVTVLPTELEVIRPKKSDKIKIMNGNFRGYSGKLIGIDGSDGIVKLDDTYEVKILDMVILAKLA 290

[Close]

BLAST of GT624257 vs. TrEMBL
Match: B9FS39_ORYSJ (Putative uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_20538 PE=4 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 6.867e-57
Identity = 110/170 (64.71%), Postives = 134/170 (78.82%), Query Frame = 1

Query:    1 AGTPRDSSAYANAPSPYLPSTPGGQPMTPNSASYLXXXXXXXXXXXXXXXLDVMSPVLGGDNEGPWLMPDILVNVHRAGEESVGVIKEVLPDGSYRVALGSSGNGETLTALPAEMEAVIPRKSDKIKIMGGALRGSTGKLIGVDGTDGIVKVDDTLDVKILDLVILAKLA 510
            A TPR+S+ Y NAPSPY+PSTP GQPMTPNSASYL               +D+MSP++GG+ EG WL+PD+LVNV RAG++  GV++EVL DGS RVALGSSGNGE +T LP E+E + P+KSDKIKIM G  RG +GKLIG+DG+DGIVK+DDT +VKILD+VILAKLA
Sbjct:  839 APTPRESN-YGNAPSPYVPSTPVGQPMTPNSASYLPGTPGGQPMTPGNVGMDIMSPIIGGEGEGNWLLPDVLVNVLRAGDDGPGVVREVLADGSCRVALGSSGNGEIVTVLPTELEVIRPKKSDKIKIMNGNFRGYSGKLIGIDGSDGIVKLDDTYEVKILDMVILAKLA 1007

[Close]

BLAST of GT624257 vs. TrEMBL
Match: B8B3X6_ORYSI (Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_22102 PE=4 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 6.867e-57
Identity = 110/170 (64.71%), Postives = 134/170 (78.82%), Query Frame = 1

Query:    1 AGTPRDSSAYANAPSPYLPSTPGGQPMTPNSASYLXXXXXXXXXXXXXXXLDVMSPVLGGDNEGPWLMPDILVNVHRAGEESVGVIKEVLPDGSYRVALGSSGNGETLTALPAEMEAVIPRKSDKIKIMGGALRGSTGKLIGVDGTDGIVKVDDTLDVKILDLVILAKLA 510
            A TPR+S+ Y NAPSPY+PSTP GQPMTPNSASYL               +D+MSP++GG+ EG WL+PD+LVNV RAG++  GV++EVL DGS RVALGSSGNGE +T LP E+E + P+KSDKIKIM G  RG +GKLIG+DG+DGIVK+DDT +VKILD+VILAKLA
Sbjct:  951 APTPRESN-YGNAPSPYVPSTPVGQPMTPNSASYLPGTPGGQPMTPGNVGMDIMSPIIGGEGEGNWLLPDVLVNVLRAGDDGPGVVREVLADGSCRVALGSSGNGEIVTVLPTELEVIRPKKSDKIKIMNGNFRGYSGKLIGIDGSDGIVKLDDTYEVKILDMVILAKLA 1119

[Close]

BLAST of GT624257 vs. TrEMBL
Match: C5Z6D8_SORBI (Putative uncharacterized protein Sb10g006840 OS=Sorghum bicolor GN=Sb10g006840 PE=4 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 4.921e-55
Identity = 107/170 (62.94%), Postives = 132/170 (77.65%), Query Frame = 1

Query:    1 AGTPRDSSAYANAPSPYLPSTPGGQPMTPNSASYLXXXXXXXXXXXXXXXLDVMSPVLGGDNEGPWLMPDILVNVHRAGEESVGVIKEVLPDGSYRVALGSSGNGETLTALPAEMEAVIPRKSDKIKIMGGALRGSTGKLIGVDGTDGIVKVDDTLDVKILDLVILAKLA 510
            A TPRD+  YANAPSPY+PSTP GQPMTPNSA+YL               LD MSP+LGG+ +G WL+PD++VNV R G++  GV++EVL DGS RVALGSSGNG+ +T LP E+E + P+KSDKIKI+ G  RG TGKLIG+DG+DGIV++DDT +VKILD+VILAKLA
Sbjct:  857 APTPRDN--YANAPSPYVPSTPVGQPMTPNSAAYLPGTPGGQPMTPGTVGLDAMSPILGGEGDGTWLLPDVMVNVLRGGDDGPGVVREVLGDGSCRVALGSSGNGDMVTVLPNEVEVIRPKKSDKIKILNGNFRGYTGKLIGIDGSDGIVRLDDTYEVKILDMVILAKLA 1024

[Close]

BLAST of GT624257 vs. TrEMBL
Match: D7M8E2_ARALY (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_327088 PE=4 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 3.527e-53
Identity = 115/174 (66.09%), Postives = 137/174 (78.74%), Query Frame = 1

Query:    1 AGTPRD-SSAYANAPSPYLPSTPGGQPMTPNSASYLXXXXXXXXXXXXXXXLDVMSPVLGGDNEGPWLMPDILVNVHRAGEES-VGVIKEVLPDGSYRVALGSSGNGETLTALPAEMEAVIPRKSDKIKIMGGALRGSTGKLIGVDGTDGIVKVDDTLDVKILDLVILAKLA*P 516
            AGTPRD  SAYANAPSPYLPSTPG QPMTP+SASYL               LDVMSPV+GGD E  W MPDILV+VH+AGE+S VGVI++V  DG+ +V+LGSSG G+T+ ALP+E+E + PRKSD++KI+GG  RGSTGKLIG+DG+DGIVK+DD LDVKILDL +LAK   P
Sbjct:  882 AGTPRDHGSAYANAPSPYLPSTPG-QPMTPSSASYLPGTPGGQPMTPGTG-LDVMSPVIGGDAEA-WFMPDILVDVHKAGEDSDVGVIRDV-SDGTCKVSLGSSGEGDTIMALPSELEIIPPRKSDRVKIVGGQYRGSTGKLIGIDGSDGIVKIDDNLDVKILDLALLAKFVQP 1051

[Close]

BLAST of GT624257 vs. TrEMBL
Match: B9H0X9_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_713135 PE=4 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 4.767e-50
Identity = 103/155 (66.45%), Postives = 122/155 (78.71%), Query Frame = 1

Query:   49 YLPSTPGGQPMTPNSASYLXXXXXXXXXXXXXXXLDVMSPVLGGDNEGPWLMPDILVNVHRAGEE-SVGVIKEVLPDGSYRVALGSSGNGETLTALPAEMEAVIPRKSDKIKIMGGALRGSTGKLIGVDGTDGIVKVDDTLDVKILDLVILAKLA 510
            YLP TPGGQ MTP +                   LD+MSPV+GGD EGPW +PDILVNVHR  +E +VG+I+EVL DGS ++ALG++GNGETLTALP+E+E V+PRKSDKIKI+GGA RG TGKLIGVDGTDGIVK++DTLDVKILD+ ILAKLA
Sbjct:    8 YLPGTPGGQLMTPGT-----------------NGLDMMSPVIGGDGEGPWFIPDILVNVHRTTDEPTVGIIREVLQDGSCKIALGANGNGETLTALPSEIEIVVPRKSDKIKILGGAHRGVTGKLIGVDGTDGIVKLEDTLDVKILDMAILAKLA 145

[Close]

BLAST of GT624257 vs. TrEMBL
Match: A5BMK7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_043874 PE=4 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 1.695e-47
Identity = 108/175 (61.71%), Postives = 122/175 (69.71%), Query Frame = 1

Query:    1 AGTPRDSS-AYANAPSPYLPSTPGGQPMTPNSASYLXXXXXXXXXXXXXXXLDVMSPVLGGDNEGPWLMPDILVNVHRAGEES-VGVIKEVLP----------------------DGSYRVALGSSGNGETLTALPAEMEAVIPRKSDKIKIMGGALRGSTGKLIGVDGTDGIVK 453
            AGTPRDS+ AYAN PSPYLPSTPGGQPMTPNS SYL               +DVMSP+ GG+ EGPW MPDILV++ R GEE+ +GVI+EVLP                      DG+YRV LGSSG GE +T L AE++AV PRKSDKIKIMGGA RG+TGKLIGVDGTDGIVK
Sbjct:  872 AGTPRDSTPAYANVPSPYLPSTPGGQPMTPNSVSYLPGTPGGQPMTPGTG-VDVMSPI-GGEQEGPWFMPDILVHIRRPGEENTLGVIREVLPHASGMGIFHWLSGSINKCFVVQDGTYRVGLGSSGGGEIVTVLHAEIDAVAPRKSDKIKIMGGAHRGATGKLIGVDGTDGIVK 1044

[Close]

BLAST of GT624257 vs. TrEMBL
Match: A9SZZ9_PHYPA (RNA polymerase II transcription elongation factor SPT5 OS=Physcomitrella patens subsp. patens GN=GTA1501 PE=4 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 7.371e-43
Identity = 91/171 (53.22%), Postives = 117/171 (68.42%), Query Frame = 1

Query:    1 AGTPRDSSAYANAPSPYLPSTPGGQPMTPNSASYLXXXXXXXXXXXXXXXLDVMSPVLGGDNEGPWLMPDILVNVHRAGEES-VGVIKEVLPDGSYRVALGSSGNGETLTALPAEMEAVIPRKSDKIKIMGGALRGSTGKLIGVDGTDGIVKVDDTLDVKILDLVILAKLA 510
            AGTP + +    APSPYLP TPGG PMTP   SYL               LD  SP +GG     W+MPDI+V + + GEE+   VI+EV+PDGS RVALG +G+G+TL    A+ME V+P+K+DKIKI+ G  RG TGKL+G+DG DGIVK+DDTLD++ILD+  L+K+A
Sbjct:  878 AGTPTEPAQSYAAPSPYLPGTPGGPPMTPGVPSYLPGTPGGQPMTPGTGGLDPTSPAIGG-----WVMPDIVVTIRKLGEETQTAVIREVMPDGSCRVALGPTGDGDTLLVGQADMELVLPKKTDKIKIVSGEHRGCTGKLMGIDGADGIVKLDDTLDIRILDMSSLSKIA 1043

[Close]

BLAST of GT624257 vs. SwissProt
Match: SPT51_ARATH (Putative transcription elongation factor SPT5 homolog 1 OS=Arabidopsis thaliana GN=At4g08350 PE=1 SV=1)

HSP 1 Score: 209.92 bits (533), Expect = 7.354e-54
Identity = 113/174 (64.94%), Postives = 137/174 (78.74%), Query Frame = 1

Query:    1 AGTPRD-SSAYANAPSPYLPSTPGGQPMTPNSASYLXXXXXXXXXXXXXXXLDVMSPVLGGDNEGPWLMPDILVNVHRAGEES-VGVIKEVLPDGSYRVALGSSGNGETLTALPAEMEAVIPRKSDKIKIMGGALRGSTGKLIGVDGTDGIVKVDDTLDVKILDLVILAKLA*P 516
            AGTPRD  SAYANAPSPYLPSTPG QPMTP+SASYL               LDVMSPV+GGD E  W MPDILV++H+AGE++ VGVI++V  DG+ +V+LGSSG G+T+ ALP+E+E + PRKSD++KI+GG  RGSTGKLIG+DG+DGIVK+DD LDVKILDL +LAK   P
Sbjct:  885 AGTPRDHGSAYANAPSPYLPSTPG-QPMTPSSASYLPGTPGGQPMTPGTG-LDVMSPVIGGDAEA-WFMPDILVDIHKAGEDTDVGVIRDV-SDGTCKVSLGSSGEGDTIMALPSELEIIPPRKSDRVKIVGGQYRGSTGKLIGIDGSDGIVKIDDNLDVKILDLALLAKFVQP 1054

[Close]

BLAST of GT624257 vs. SwissProt
Match: SPT52_ARATH (Putative transcription elongation factor SPT5 homolog 2 OS=Arabidopsis thaliana GN=At2g34210 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 2.821e-21
Identity = 69/166 (41.57%), Postives = 87/166 (52.41%), Query Frame = 1

Query:   31 ANAPSP-------YLPSTPGGQPMTPNSASYLXXXXXXXXXXXXXXXLDVMSPVLGGDNEGPWLMPDILVNVHRAGEESVGVIKEVLPDGSYRVALGSSGNGETLTALPAEMEAVIPRKSDKIKIMGGALRGSTGKLIGVDGTDGIVKVDDTLDVKILDLVILAKL 507
            ANAPSP       YLP+TPGGQ MTP +                   LDVMS     D    +   D +      G            DGS  VALG  G GET+ A   ++  V P+K++++KI+GG   GST K+IG DG DGIVK+D++LD+KIL L ILAKL
Sbjct:  853 ANAPSPMTPSSTSYLPTTPGGQAMTPGT------------------DLDVMSL----DIVNIFQFTDYVSLFFLCGHHQ---------DGSCVVALGHRGEGETIRATQNKVSLVCPKKNERVKILGGKYCGSTAKVIGEDGQDGIVKLDESLDIKILKLTILAKL 987

[Close]

BLAST of GT624257 vs. SwissProt
Match: SPT5H_PONAB (Transcription elongation factor SPT5 OS=Pongo abelii GN=SUPT5H PE=2 SV=1)

HSP 1 Score: 59.3066 bits (142), Expect = 1.605e-8
Identity = 54/168 (32.14%), Postives = 81/168 (48.21%), Query Frame = 1

Query:   25 AYANAPSPYLPSTPGGQPMTPNSASYLXXXXXXXXXXXXXXXLDVMSPVLGGD-NEGPWLMPDILVNVHRAGEES-----VGVIKEVLPDGSYRVALGSSGNGETLTALPAE-MEAVIPRKSDKIKIMGGALRGSTGKLIGVDGTDGIVKVDDTLDVKILDLVILAKL 507
            AY  +PSP   S  G  PMTP + S                  +  +P  G + N   W+  DI V V     ++      GVI+ V   G   V L  S   E + ++ +E +E + P K++K+K++ G  R +TG L+ +DG DGIV++D    +KIL+L  L KL
Sbjct:  934 AYQASPSP---SPVGYSPMTPGAPS--------------PGGYNPHTPGSGIEQNSSDWVTTDIQVKVRDTYLDTQVVGQTGVIRSVT-GGMCSVYLKDS---EKVVSISSEHLEPITPTKNNKVKVILGEDREATGVLLSIDGEDGIVRMDPDEQLKILNLRFLGKL 1080

[Close]

BLAST of GT624257 vs. SwissProt
Match: SPT5H_CHICK (Transcription elongation factor SPT5 OS=Gallus gallus GN=SUPT5H PE=2 SV=1)

HSP 1 Score: 58.5362 bits (140), Expect = 2.738e-8
Identity = 56/168 (33.33%), Postives = 81/168 (48.21%), Query Frame = 1

Query:   25 AYANAPSPYLPSTPGGQPMTPNSASYLXXXXXXXXXXXXXXXLDVMSPVLGGD-NEGPWLMPDILVNVHRAGEES-----VGVIKEVLPDGSYRVALGSSGNGETLTALPAE-MEAVIPRKSDKIKIMGGALRGSTGKLIGVDGTDGIVKVDDTLDVKILDLVILAKL 507
            AY  +PSP   S  G  PMTP + S                  +  +P  G + +   W+  DI V V     +S      GVI+ V   G   V L  S   E + ++ +E +E V P KS+K+K++ G  R +TG L+ +DG DGIV++D    +KIL+L  L KL
Sbjct:  930 AYQASPSP---SPVGYSPMTPGAPS--------------PGGYNPHTPGSGIEQSSSDWVTTDIQVKVRDTYLDSQAVGQTGVIRSVT-GGMCSVYLKDS---EKVVSISSEHLEPVTPTKSNKVKVILGEDREATGILLSIDGEDGIVRMDLDEQLKILNLRFLGKL 1076

[Close]

BLAST of GT624257 vs. SwissProt
Match: SPT5H_HUMAN (Transcription elongation factor SPT5 OS=Homo sapiens GN=SUPT5H PE=1 SV=1)

HSP 1 Score: 58.151 bits (139), Expect = 3.577e-8
Identity = 54/168 (32.14%), Postives = 81/168 (48.21%), Query Frame = 1

Query:   25 AYANAPSPYLPSTPGGQPMTPNSASYLXXXXXXXXXXXXXXXLDVMSPVLGGD-NEGPWLMPDILVNVHRAGEES-----VGVIKEVLPDGSYRVALGSSGNGETLTALPAE-MEAVIPRKSDKIKIMGGALRGSTGKLIGVDGTDGIVKVDDTLDVKILDLVILAKL 507
            AY  +PSP   S  G  PMTP + S                  +  +P  G + N   W+  DI V V     ++      GVI+ V   G   V L  S   E + ++ +E +E + P K++K+K++ G  R +TG L+ +DG DGIV++D    +KIL+L  L KL
Sbjct:  938 AYQASPSP---SPVGYSPMTPGAPS--------------PGGYNPHTPGSGIEQNSSDWVTTDIQVKVRDTYLDTQVVGQTGVIRSVT-GGMCSVYLKDS---EKVVSISSEHLEPITPTKNNKVKVILGEDREATGVLLSIDGEDGIVRMDLDEQLKILNLRFLGKL 1084

[Close]

BLAST of GT624257 vs. SwissProt
Match: SPT5H_MOUSE (Transcription elongation factor SPT5 OS=Mus musculus GN=Supt5h PE=1 SV=1)

HSP 1 Score: 56.6102 bits (135), Expect = 1.041e-7
Identity = 53/169 (31.36%), Postives = 82/169 (48.52%), Query Frame = 1

Query:   25 AYANAPSPYLPSTPGGQPMTPNSASYLXXXXXXXXXXXXXXXLDVMSPVLGGD-NEGPWLMPDILVNVHRAGEES-----VGVIKEVLPDGSYRVALGSSGNGETLTALPAE-MEAVIPRKSDKIKIMGGALRGSTGKLIGVDGTDGIVKVD-DTLDVKILDLVILAKL 507
            AY  +PSP   S  G  PMTP + S                  +  +P  G + N   W+  DI V V     ++      GVI+ V   G   V L  S   E + ++ +E +E + P K++K+K++ G  R +TG L+ +DG DGI+++D +   +KIL+L  L KL
Sbjct:  932 AYQASPSP---SPVGYSPMTPGAPS--------------PGGYNPHTPGSGIEQNSSDWVTTDIQVKVRDTYLDTQIVGQTGVIRSVT-GGMCSVYLKDS---EKVVSISSEHLEPITPTKNNKVKVILGEDREATGVLLSIDGEDGIIRMDLEDQQIKILNLRFLGKL 1079

[Close]

BLAST of GT624257 vs. SwissProt
Match: SPT5H_DANRE (Transcription elongation factor SPT5 OS=Danio rerio GN=supt5h PE=1 SV=1)

HSP 1 Score: 53.9138 bits (128), Expect = 6.745e-7
Identity = 52/171 (30.41%), Postives = 79/171 (46.20%), Query Frame = 1

Query:   25 AYANAPSPYLPSTPGGQPMTPNSASYLXXXXXXXXXXXXXXXLDVMSPVLGGDN----EGPWLMPDILVNVHRAGEES-----VGVIKEVLPDGSYRVALGSSGNGETLTALPAE-MEAVIPRKSDKIKIMGGALRGSTGKLIGVDGTDGIVKVDDTLDVKILDLVILAKL 507
            AY  +PSP   S  G  PMTP + S                     +P   G N       W+  DI+V V     +       G+I+ V   G   V L  +   E + ++ +E +E V P K++K+K++ G  R +TG L+ +DG DGIV+++    +KIL+L  L KL
Sbjct:  936 AYQASPSP---SPVGYSPMTPGAPSP-----------------GGYNPHTPGSNIDQASNDWVTTDIMVRVKDTFLDGGVINQTGIIRSVT-GGMCSVFLQDT---EKVVSISSEHLEPVTPTKNNKVKVILGEDREATGVLLSIDGEDGIVRMELDEQLKILNLRFLGKL 1082

[Close]

BLAST of GT624257 vs. TAIR peptide
Match: AT4G08350.1 (| Symbols: GTA02, GTA2 | global transcription factor group A2 | chr4:5286351-5292072 FORWARD LENGTH=1041)

HSP 1 Score: 209.92 bits (533), Expect = 7.781e-55
Identity = 113/174 (64.94%), Postives = 137/174 (78.74%), Query Frame = 1

Query:    1 AGTPRD-SSAYANAPSPYLPSTPGGQPMTPNSASYLXXXXXXXXXXXXXXXLDVMSPVLGGDNEGPWLMPDILVNVHRAGEES-VGVIKEVLPDGSYRVALGSSGNGETLTALPAEMEAVIPRKSDKIKIMGGALRGSTGKLIGVDGTDGIVKVDDTLDVKILDLVILAKLA*P 516
            AGTPRD  SAYANAPSPYLPSTPG QPMTP+SASYL               LDVMSPV+GGD E  W MPDILV++H+AGE++ VGVI++V  DG+ +V+LGSSG G+T+ ALP+E+E + PRKSD++KI+GG  RGSTGKLIG+DG+DGIVK+DD LDVKILDL +LAK   P
Sbjct:  872 AGTPRDHGSAYANAPSPYLPSTPG-QPMTPSSASYLPGTPGGQPMTPGTG-LDVMSPVIGGDAEA-WFMPDILVDIHKAGEDTDVGVIRDV-SDGTCKVSLGSSGEGDTIMALPSELEIIPPRKSDRVKIVGGQYRGSTGKLIGIDGSDGIVKIDDNLDVKILDLALLAKFVQP 1041

[Close]

BLAST of GT624257 vs. TAIR peptide
Match: AT2G34210.1 (| Symbols: | Transcription elongation factor Spt5 | chr2:14445938-14450522 FORWARD LENGTH=989)

HSP 1 Score: 149.828 bits (377), Expect = 9.556e-37
Identity = 90/177 (50.85%), Postives = 116/177 (65.54%), Query Frame = 1

Query:    1 AGTPRDSSAYANAPSP-------YLPSTPGGQPMTPNSASYLXXXXXXXXXXXXXXXLDVMSPVLGGDNEGPWLMPDILVNVHRAGEE-SVGVIKEVLPDGSYRVALGSSGNGETLTALPAEMEAVIPRKSDKIKIMGGALRGSTGKLIGVDGTDGIVKVDDTLDVKILDLVILAKL 507
            AGTP ++   ANAPSP       YLP+TPGGQ MTP +                   LDVMS  +GGD E  ++ P ILVNVH+AGE+ + GVI++VLPDGS  VALG  G GET+ A   ++  V P+K++++KI+GG   GST K+IG DG DGIVK+D++LD+KIL L ILAKL
Sbjct:  832 AGTPINN---ANAPSPMTPSSTSYLPTTPGGQAMTPGT------------------DLDVMSLDIGGDAETRFI-PGILVNVHKAGEDRNPGVIRDVLPDGSCVVALGHRGEGETIRATQNKVSLVCPKKNERVKILGGKYCGSTAKVIGEDGQDGIVKLDESLDIKILKLTILAKL 986

[Close]

BLAST of GT624257 vs. TAIR peptide
Match: AT4G08360.1 (| Symbols: | KOW domain-containing protein | chr4:5295933-5296947 FORWARD LENGTH=141)

HSP 1 Score: 109.383 bits (272), Expect = 1.431e-24
Identity = 59/105 (56.19%), Postives = 74/105 (70.48%), Query Frame = 1

Query:  202 MPDILVNVHRAGEESVGVIKEVLPDGSYRVALGSSGNGETLTALPAEMEAVIPRKSDKIKIMGGALRGSTGKLIGVDGTDGIVKVDDTLDVKILDLVILAKLA*P 516
            MPDILV VH +    VGVI++V  DG  +V+LGS G G+T+    +E+E V PRKSD +KI+GG+  G T KLIG+DG D IVK+D  LDVKILDL +LAK   P
Sbjct:   41 MPDILVTVHNS---EVGVIRDV-SDGMCKVSLGSGGEGDTIMVPSSELEIVRPRKSDHVKILGGSYLGLTCKLIGIDGLDAIVKIDGNLDVKILDLALLAKFVQP 141

The following BLAST results are available for this feature:

BLAST of GT624257 vs. TrEMBL
BLAST of GT624257 vs. SwissProt
BLAST of GT624257 vs. TAIR peptide

BLAST of GT624257 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Lens culinaris unigene v1 vs Trembl)
Total hits: 10


Match Name	E-value	Identity	Description
B9SJK4_RICCO	2.781e-66	75.29	Suppressor of ty, putative OS=Ricinus communis GN=...	[more]
B9HRF8_POPTR	2.603e-64	73.26	Global transcription factor group OS=Populus trich...	[more]
Q69T55_ORYSJ	6.867e-57	64.71	Os06g0208300 protein OS=Oryza sativa subsp. japoni...	[more]
B9FS39_ORYSJ	6.867e-57	64.71	Putative uncharacterized protein OS=Oryza sativa s...	[more]
B8B3X6_ORYSI	6.867e-57	64.71	Putative uncharacterized protein OS=Oryza sativa s...	[more]
C5Z6D8_SORBI	4.921e-55	62.94	Putative uncharacterized protein Sb10g006840 OS=So...	[more]
D7M8E2_ARALY	3.527e-53	66.09	Putative uncharacterized protein OS=Arabidopsis ly...	[more]
B9H0X9_POPTR	4.767e-50	66.45	Predicted protein OS=Populus trichocarpa GN=POPTRD...	[more]
A5BMK7_VITVI	1.695e-47	61.71	Putative uncharacterized protein OS=Vitis vinifera...	[more]
A9SZZ9_PHYPA	7.371e-43	53.22	RNA polymerase II transcription elongation factor ...	[more]

BLAST of GT624257 vs. SwissProt
Analysis Date: 2010-12-28 (Homology Analysis: Lens culinaris unigene v1 vs Swissprot)
Total hits: 7


Match Name	E-value	Identity	Description
SPT51_ARATH	7.354e-54	64.94	Putative transcription elongation factor SPT5 homo...	[more]
SPT52_ARATH	2.821e-21	41.57	Putative transcription elongation factor SPT5 homo...	[more]
SPT5H_PONAB	1.605e-8	32.14	Transcription elongation factor SPT5 OS=Pongo abel...	[more]
SPT5H_CHICK	2.738e-8	33.33	Transcription elongation factor SPT5 OS=Gallus gal...	[more]
SPT5H_HUMAN	3.577e-8	32.14	Transcription elongation factor SPT5 OS=Homo sapie...	[more]
SPT5H_MOUSE	1.041e-7	31.36	Transcription elongation factor SPT5 OS=Mus muscul...	[more]
SPT5H_DANRE	6.745e-7	30.41	Transcription elongation factor SPT5 OS=Danio reri...	[more]

BLAST of GT624257 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Lens culinaris unigene v1 vs TAIR 10 peptide)
Total hits: 3


Match Name	E-value	Identity	Description
AT4G08350.1	7.781e-55	64.94	\| Symbols: GTA02, GTA2 \| global transcription fact...	[more]
AT2G34210.1	9.556e-37	50.85	\| Symbols: \| Transcription elongation factor Spt5...	[more]
AT4G08360.1	1.431e-24	56.19	\| Symbols: \| KOW domain-containing protein \| chr4...	[more]

InterPro

Analysis Name: InterProScan analysis for Lens culinaris unigene v1
Date Performed: 2011-01-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR11125	SUPPRESSOR OF TY 5	coord: 3..161 score: 5.3
None	No IPR available	SEG	seg	seg	coord: 36..50 score
None	No IPR available	SEG	seg	seg	coord: 45..59 score

Properties


Property Name	Value
Singlet in analysis	Lens culinaris unigene v1

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>GT624257 ID=GT624257; Name=GT624257; organism=Lens culinaris; type=EST; length=579bp
GCTGGAACCCCACGGGACAGTTCTGCCTACGCAAATGCTCCTAGCCCATA
TTTACCATCAACACCAGGTGGGCAGCCTATGACACCAAATTCTGCATCTT
ATCTTCCTGGCACCCCTGGAGGACAACCTATGACTCCAGGAACTGGTGGT
CTTGACGTGATGTCTCCAGTATTAGGTGGGGACAATGAAGGGCCTTGGCT
TATGCCAGACATATTGGTCAATGTACACAGGGCTGGAGAAGAGTCTGTTG
GGGTTATAAAAGAAGTTCTTCCGGATGGTTCTTATAGGGTAGCTCTTGGG
TCTAGCGGAAATGGTGAAACATTAACGGCCCTTCCTGCTGAAATGGAGGC
TGTAATTCCAAGAAAATCTGATAAAATAAAGATAATGGGCGGGGCTTTGC
GTGGTTCCACTGGAAAGTTGATTGGTGTGGATGGCACTGATGGCATTGTT
AAAGTAGATGATACATTGGATGTGAAGATTTTAGACTTGGTTATTTTGGC
AAAATTAGCTTAACCATGATAATCTTGTAGAGCAATTATTTAACATCAAT
GCTATATATAGTACGAAGGAGTATTTAAC

Search form