GT624288

EST Overview
NameGT624288
Unique NameGT624288
TypeEST
OrganismLens culinaris (lentil)
Sequence length785
Unigenes
This EST is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Lens culinaris unigene v1Lens culinaris unigene v1EST
Libraries
Library NameType
LIBEST_025390 LCUSE1NGcdna_library
Homology
BLAST of GT624288 vs. TrEMBL
Match: D7T9L2_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_11.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00012102001 PE=4 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 1.421e-50
Identity = 103/113 (91.15%), Postives = 108/113 (95.58%), Query Frame = 2
Query:  164 EELLQEHFNDLIKFVKAKASEDPTSSPDKPITVAEVEPLVKDFASRWKAAIELMHKDVITSFSNFLCGMEILRAALTQLLLYYTRLSDSIKRIPGGSALNKDLVSISSIMYEI 502
            EELL EHF DLIKFVK +ASEDP+SS ++PITVAEVEPLVKDFASRWK+AIELMHKDVITSFSNFLCGMEILRAALTQLLLYYTRLSD IKRIPGGSALNKDLVSISSIMYEI
Sbjct:  588 EELLLEHFGDLIKFVKTRASEDPSSSSERPITVAEVEPLVKDFASRWKSAIELMHKDVITSFSNFLCGMEILRAALTQLLLYYTRLSDCIKRIPGGSALNKDLVSISSIMYEI 700          
BLAST of GT624288 vs. TrEMBL
Match: A5BQJ1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_015775 PE=4 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 1.421e-50
Identity = 103/113 (91.15%), Postives = 108/113 (95.58%), Query Frame = 2
Query:  164 EELLQEHFNDLIKFVKAKASEDPTSSPDKPITVAEVEPLVKDFASRWKAAIELMHKDVITSFSNFLCGMEILRAALTQLLLYYTRLSDSIKRIPGGSALNKDLVSISSIMYEI 502
            EELL EHF DLIKFVK +ASEDP+SS ++PITVAEVEPLVKDFASRWK+AIELMHKDVITSFSNFLCGMEILRAALTQLLLYYTRLSD IKRIPGGSALNKDLVSISSIMYEI
Sbjct:   33 EELLLEHFGDLIKFVKTRASEDPSSSSERPITVAEVEPLVKDFASRWKSAIELMHKDVITSFSNFLCGMEILRAALTQLLLYYTRLSDCIKRIPGGSALNKDLVSISSIMYEI 145          
BLAST of GT624288 vs. TrEMBL
Match: B9S0R4_RICCO (Vacuolar protein sorting protein, putative OS=Ricinus communis GN=RCOM_1222120 PE=4 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 2.269e-48
Identity = 100/113 (88.50%), Postives = 106/113 (93.81%), Query Frame = 2
Query:  164 EELLQEHFNDLIKFVKAKASEDPTSSPDKPITVAEVEPLVKDFASRWKAAIELMHKDVITSFSNFLCGMEILRAALTQLLLYYTRLSDSIKRIPGGSALNKDLVSISSIMYEI 502
            EELL EHF+DLIKFVK +ASEDP+S+ +KPITVAEVE +VKDF SRWKAAIELMHKDVITSFSNFLCGMEILRAALTQLLLYYTRLSD IKRI GGSALNKDLVSISSIMYEI
Sbjct:  594 EELLLEHFSDLIKFVKTRASEDPSSNSEKPITVAEVETIVKDFGSRWKAAIELMHKDVITSFSNFLCGMEILRAALTQLLLYYTRLSDCIKRIVGGSALNKDLVSISSIMYEI 706          
BLAST of GT624288 vs. TrEMBL
Match: B9HDR5_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_560298 PE=4 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 6.603e-48
Identity = 99/113 (87.61%), Postives = 107/113 (94.69%), Query Frame = 2
Query:  164 EELLQEHFNDLIKFVKAKASEDPTSSPDKPITVAEVEPLVKDFASRWKAAIELMHKDVITSFSNFLCGMEILRAALTQLLLYYTRLSDSIKRIPGGSALNKDLVSISSIMYEI 502
            EELL EHF+DLIKFVK++ASE+P S  +KPITVAEVE +VKDFASRWKAAIELMHKDVITSFSNFLCGMEILRAALTQLLLYYTRLSD+IK+I GGSALNKDLVSISSIMYEI
Sbjct:  599 EELLLEHFSDLIKFVKSRASEEPGSGTEKPITVAEVETIVKDFASRWKAAIELMHKDVITSFSNFLCGMEILRAALTQLLLYYTRLSDTIKKIVGGSALNKDLVSISSIMYEI 711          
BLAST of GT624288 vs. TrEMBL
Match: C0PTS9_PICSI (Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 1.798e-45
Identity = 93/113 (82.30%), Postives = 103/113 (91.15%), Query Frame = 2
Query:  164 EELLQEHFNDLIKFVKAKASEDPTSSPDKPITVAEVEPLVKDFASRWKAAIELMHKDVITSFSNFLCGMEILRAALTQLLLYYTRLSDSIKRIPGGSALNKDLVSISSIMYEI 502
            EELL EHFNDLI+FVK +A E+ +SS ++P+TV EVEPLVKDFASRWK  IE+MHKDVITSFSNFLCGMEIL+AALTQLLLYYTRLSD IKRI GGSALNK+LVSISSIMYEI
Sbjct:   50 EELLLEHFNDLIRFVKTRAGEETSSSSERPVTVNEVEPLVKDFASRWKGTIEVMHKDVITSFSNFLCGMEILKAALTQLLLYYTRLSDCIKRIGGGSALNKELVSISSIMYEI 162          
BLAST of GT624288 vs. TrEMBL
Match: D7KYT3_ARALY (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_476259 PE=4 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 1.166e-44
Identity = 91/113 (80.53%), Postives = 104/113 (92.04%), Query Frame = 2
Query:  164 EELLQEHFNDLIKFVKAKASEDPTSSPDKPITVAEVEPLVKDFASRWKAAIELMHKDVITSFSNFLCGMEILRAALTQLLLYYTRLSDSIKRIPGGSALNKDLVSISSIMYEI 502
            EELL EHF+DLIKFVK++ASED +S+P++ ITVAEVEPLVKDF SRWK AIELM KD+ITSFSNFLCGM+ILRAALTQLLLYYTRL+D IK++ GGSALN+DLVSI SIMYEI
Sbjct:  588 EELLVEHFSDLIKFVKSRASEDSSSNPERSITVAEVEPLVKDFGSRWKTAIELMDKDIITSFSNFLCGMDILRAALTQLLLYYTRLTDCIKKMDGGSALNRDLVSIQSIMYEI 700          
BLAST of GT624288 vs. TrEMBL
Match: Q9FVV3_ARATH (ARE1-like protein; 78992-73047 OS=Arabidopsis thaliana GN=F3I17.8 PE=4 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 7.555e-44
Identity = 90/113 (79.65%), Postives = 102/113 (90.27%), Query Frame = 2
Query:  164 EELLQEHFNDLIKFVKAKASEDPTSSPDKPITVAEVEPLVKDFASRWKAAIELMHKDVITSFSNFLCGMEILRAALTQLLLYYTRLSDSIKRIPGGSALNKDLVSISSIMYEI 502
            EELL EHF+DLIKFVK +ASED + +P++ IT+AEVEPLVKDF SRWK AIELM KD+ITSFSNFLCGM+ILRAALTQLLLYYTRL+D IK+I GGSALN+DLVSI SIMYEI
Sbjct:  616 EELLVEHFSDLIKFVKNRASEDSSLNPERSITIAEVEPLVKDFGSRWKTAIELMDKDIITSFSNFLCGMDILRAALTQLLLYYTRLTDCIKKIDGGSALNRDLVSIQSIMYEI 728          
BLAST of GT624288 vs. TrEMBL
Match: Q94KD3_ARATH (At1g71270/F3I17_8 OS=Arabidopsis thaliana GN=At1g71270 PE=2 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 7.555e-44
Identity = 90/113 (79.65%), Postives = 102/113 (90.27%), Query Frame = 2
Query:  164 EELLQEHFNDLIKFVKAKASEDPTSSPDKPITVAEVEPLVKDFASRWKAAIELMHKDVITSFSNFLCGMEILRAALTQLLLYYTRLSDSIKRIPGGSALNKDLVSISSIMYEI 502
            EELL EHF+DLIKFVK +ASED + +P++ IT+AEVEPLVKDF SRWK AIELM KD+ITSFSNFLCGM+ILRAALTQLLLYYTRL+D IK+I GGSALN+DLVSI SIMYEI
Sbjct:  588 EELLVEHFSDLIKFVKNRASEDSSLNPERSITIAEVEPLVKDFGSRWKTAIELMDKDIITSFSNFLCGMDILRAALTQLLLYYTRLTDCIKKIDGGSALNRDLVSIQSIMYEI 700          
BLAST of GT624288 vs. TrEMBL
Match: Q68EC6_ARATH (ARE1-like protein OS=Arabidopsis thaliana GN=POKY POLLEN TUBE PE=2 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 7.555e-44
Identity = 90/113 (79.65%), Postives = 102/113 (90.27%), Query Frame = 2
Query:  164 EELLQEHFNDLIKFVKAKASEDPTSSPDKPITVAEVEPLVKDFASRWKAAIELMHKDVITSFSNFLCGMEILRAALTQLLLYYTRLSDSIKRIPGGSALNKDLVSISSIMYEI 502
            EELL EHF+DLIKFVK +ASED + +P++ IT+AEVEPLVKDF SRWK AIELM KD+ITSFSNFLCGM+ILRAALTQLLLYYTRL+D IK+I GGSALN+DLVSI SIMYEI
Sbjct:  588 EELLVEHFSDLIKFVKNRASEDSSLNPERSITIAEVEPLVKDFGSRWKTAIELMDKDIITSFSNFLCGMDILRAALTQLLLYYTRLTDCIKKIDGGSALNRDLVSIQSIMYEI 700          
BLAST of GT624288 vs. TrEMBL
Match: Q56WP0_ARATH (ARE1-like protein OS=Arabidopsis thaliana GN=At1g71270 PE=2 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 7.555e-44
Identity = 90/113 (79.65%), Postives = 102/113 (90.27%), Query Frame = 2
Query:  164 EELLQEHFNDLIKFVKAKASEDPTSSPDKPITVAEVEPLVKDFASRWKAAIELMHKDVITSFSNFLCGMEILRAALTQLLLYYTRLSDSIKRIPGGSALNKDLVSISSIMYEI 502
            EELL EHF+DLIKFVK +ASED + +P++ IT+AEVEPLVKDF SRWK AIELM KD+ITSFSNFLCGM+ILRAALTQLLLYYTRL+D IK+I GGSALN+DLVSI SIMYEI
Sbjct:   33 EELLVEHFSDLIKFVKNRASEDSSLNPERSITIAEVEPLVKDFGSRWKTAIELMDKDIITSFSNFLCGMDILRAALTQLLLYYTRLTDCIKKIDGGSALNRDLVSIQSIMYEI 145          
BLAST of GT624288 vs. SwissProt
Match: VPS52_RAT (Vacuolar protein sorting-associated protein 52 homolog OS=Rattus norvegicus GN=Vps52 PE=2 SV=2)

HSP 1 Score: 60.8474 bits (146), Expect = 9.662e-9
Identity = 42/116 (36.21%), Postives = 64/116 (55.17%), Query Frame = 2
Query:  164 EELLQEHFNDLIKFVK-AKASEDPTSSPDKPITVAEVEPLVKDFASRWKAAIELMHKDVITSFSNFLCGMEILRAALTQLLLYYTRLSDSIKRIPGGSAL--NKDLVSISSIMYEI 502
            EELL   F  L+ FVK A+A  +   +       A V  L++ F S WKA++E + +DV+ SF+NF  G  I++ ALTQL+  Y R    + + P   AL    +L++I  +M E+
Sbjct:  602 EELLSPPFGGLVAFVKEAEALIERGQAERLRGEEARVTQLIRGFGSSWKASVESLSQDVMRSFTNFRNGTSIIQGALTQLIQLYHRFHRVLSQ-PQLRALPARAELINIHHLMVEL 716          
BLAST of GT624288 vs. SwissProt
Match: VPS52_MOUSE (Vacuolar protein sorting-associated protein 52 homolog OS=Mus musculus GN=Vps52 PE=2 SV=1)

HSP 1 Score: 60.8474 bits (146), Expect = 9.662e-9
Identity = 42/116 (36.21%), Postives = 64/116 (55.17%), Query Frame = 2
Query:  164 EELLQEHFNDLIKFVK-AKASEDPTSSPDKPITVAEVEPLVKDFASRWKAAIELMHKDVITSFSNFLCGMEILRAALTQLLLYYTRLSDSIKRIPGGSAL--NKDLVSISSIMYEI 502
            EELL   F  L+ FVK A+A  +   +       A V  L++ F S WKA++E + +DV+ SF+NF  G  I++ ALTQL+  Y R    + + P   AL    +L++I  +M E+
Sbjct:  602 EELLSPPFGGLVAFVKEAEALIERGQAERLRGEEARVTQLIRGFGSSWKASVESLSQDVMRSFTNFRNGTSIIQGALTQLIQLYHRFHRVLSQ-PQLRALPARAELINIHHLMVEL 716          
BLAST of GT624288 vs. SwissProt
Match: VPS52_HUMAN (Vacuolar protein sorting-associated protein 52 homolog OS=Homo sapiens GN=VPS52 PE=1 SV=1)

HSP 1 Score: 59.6918 bits (143), Expect = 2.152e-8
Identity = 41/116 (35.34%), Postives = 64/116 (55.17%), Query Frame = 2
Query:  164 EELLQEHFNDLIKFVK-AKASEDPTSSPDKPITVAEVEPLVKDFASRWKAAIELMHKDVITSFSNFLCGMEILRAALTQLLLYYTRLSDSIKRIPGGSAL--NKDLVSISSIMYEI 502
            EELL   F  L+ FVK A+A  +   +       A V  L++ F S WK+++E + +DV+ SF+NF  G  I++ ALTQL+  Y R    + + P   AL    +L++I  +M E+
Sbjct:  602 EELLSPPFGGLVAFVKEAEALIERGQAERLRGEEARVTQLIRGFGSSWKSSVESLSQDVMRSFTNFRNGTSIIQGALTQLIQLYHRFHRVLSQ-PQLRALPARAELINIHHLMVEL 716          
BLAST of GT624288 vs. SwissProt
Match: VPS52_CANFA (Vacuolar protein sorting-associated protein 52 homolog OS=Canis familiaris GN=VPS52 PE=3 SV=1)

HSP 1 Score: 59.6918 bits (143), Expect = 2.152e-8
Identity = 41/116 (35.34%), Postives = 64/116 (55.17%), Query Frame = 2
Query:  164 EELLQEHFNDLIKFVK-AKASEDPTSSPDKPITVAEVEPLVKDFASRWKAAIELMHKDVITSFSNFLCGMEILRAALTQLLLYYTRLSDSIKRIPGGSAL--NKDLVSISSIMYEI 502
            EELL   F  L+ FVK A+A  +   +       A V  L++ F S WK+++E + +DV+ SF+NF  G  I++ ALTQL+  Y R    + + P   AL    +L++I  +M E+
Sbjct:  602 EELLSPPFGGLVAFVKEAEALIERGQAERLRGEEARVTQLIRGFGSSWKSSVESLSQDVMRSFTNFRNGTSIIQGALTQLIQLYHRFHRVLSQ-PQLRALPARAELINIHHLMVEL 716          
BLAST of GT624288 vs. TAIR peptide
Match: AT1G71270.1 (| Symbols: POK, TTD8, ATVPS52 | Vps52 / Sac2 family | chr1:26863736-26869817 FORWARD LENGTH=707)

HSP 1 Score: 181.415 bits (459), Expect = 4.882e-46
Identity = 90/113 (79.65%), Postives = 102/113 (90.27%), Query Frame = 2
Query:  164 EELLQEHFNDLIKFVKAKASEDPTSSPDKPITVAEVEPLVKDFASRWKAAIELMHKDVITSFSNFLCGMEILRAALTQLLLYYTRLSDSIKRIPGGSALNKDLVSISSIMYEI 502
            EELL EHF+DLIKFVK +ASED + +P++ IT+AEVEPLVKDF SRWK AIELM KD+ITSFSNFLCGM+ILRAALTQLLLYYTRL+D IK+I GGSALN+DLVSI SIMYEI
Sbjct:  588 EELLVEHFSDLIKFVKNRASEDSSLNPERSITIAEVEPLVKDFGSRWKTAIELMDKDIITSFSNFLCGMDILRAALTQLLLYYTRLTDCIKKIDGGSALNRDLVSIQSIMYEI 700          
BLAST of GT624288 vs. TAIR peptide
Match: AT1G71300.1 (| Symbols: | Vps52 / Sac2 family | chr1:26874064-26878319 FORWARD LENGTH=721)

HSP 1 Score: 167.933 bits (424), Expect = 5.586e-42
Identity = 81/113 (71.68%), Postives = 98/113 (86.73%), Query Frame = 2
Query:  164 EELLQEHFNDLIKFVKAKASEDPTSSPDKPITVAEVEPLVKDFASRWKAAIELMHKDVITSFSNFLCGMEILRAALTQLLLYYTRLSDSIKRIPGGSALNKDLVSISSIMYEI 502
            EELL EHF+D+IKFVK++A+ED + + ++ ITVAEVEPLVKDF SRWK AIELMHKD+IT FSNFLCGM+IL A +TQLLLYYTRL D IK+I GGSALN+D+V+  SIM+EI
Sbjct:  602 EELLVEHFSDMIKFVKSRANEDSSPNLERSITVAEVEPLVKDFGSRWKTAIELMHKDIITCFSNFLCGMDILIAGMTQLLLYYTRLEDCIKKIDGGSALNRDIVNYQSIMFEI 714          
The following BLAST results are available for this feature:
BLAST of GT624288 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Lens culinaris unigene v1 vs Trembl)
Total hits: 10
Match NameE-valueIdentityDescription
D7T9L2_VITVI1.421e-5091.15Whole genome shotgun sequence of line PN40024, sca... [more]
A5BQJ1_VITVI1.421e-5091.15Putative uncharacterized protein OS=Vitis vinifera... [more]
B9S0R4_RICCO2.269e-4888.50Vacuolar protein sorting protein, putative OS=Rici... [more]
B9HDR5_POPTR6.603e-4887.61Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]
C0PTS9_PICSI1.798e-4582.30Putative uncharacterized protein OS=Picea sitchens... [more]
D7KYT3_ARALY1.166e-4480.53Putative uncharacterized protein OS=Arabidopsis ly... [more]
Q9FVV3_ARATH7.555e-4479.65ARE1-like protein; 78992-73047 OS=Arabidopsis thal... [more]
Q94KD3_ARATH7.555e-4479.65At1g71270/F3I17_8 OS=Arabidopsis thaliana GN=At1g7... [more]
Q68EC6_ARATH7.555e-4479.65ARE1-like protein OS=Arabidopsis thaliana GN=POKY ... [more]
Q56WP0_ARATH7.555e-4479.65ARE1-like protein OS=Arabidopsis thaliana GN=At1g7... [more]
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BLAST of GT624288 vs. SwissProt
Analysis Date: 2010-12-28 (Homology Analysis: Lens culinaris unigene v1 vs Swissprot)
Total hits: 4
Match NameE-valueIdentityDescription
VPS52_RAT9.662e-936.21Vacuolar protein sorting-associated protein 52 hom... [more]
VPS52_MOUSE9.662e-936.21Vacuolar protein sorting-associated protein 52 hom... [more]
VPS52_HUMAN2.152e-835.34Vacuolar protein sorting-associated protein 52 hom... [more]
VPS52_CANFA2.152e-835.34Vacuolar protein sorting-associated protein 52 hom... [more]
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BLAST of GT624288 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Lens culinaris unigene v1 vs TAIR 10 peptide)
Total hits: 2
Match NameE-valueIdentityDescription
AT1G71270.14.882e-4679.65| Symbols: POK, TTD8, ATVPS52 | Vps52 / Sac2 famil... [more]
AT1G71300.15.586e-4271.68| Symbols: | Vps52 / Sac2 family | chr1:26874064... [more]
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InterPro
Analysis Name: InterProScan analysis for Lens culinaris unigene v1
Date Performed: 2011-01-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007258Vps52/Sac2PANTHERPTHR14190SUPPRESSOR OF ACTIN MUTATIONS 2/VACUOLAR PROTEIN SORTING 52coord: 24..143
score: 6.7
NoneNo IPR availablePANTHERPTHR14190:SF6ARE1-LIKE PROTEINcoord: 24..143
score: 6.7
NoneNo IPR availableSEGsegsegcoord: 72..87
score

Properties
Property NameValue
Singlet in analysisLens culinaris unigene v1
Sequences
The following sequences are available for this feature:

EST sequence

>GT624288 ID=GT624288; Name=GT624288; organism=Lens culinaris; type=EST; length=785bp
AGAACCTACAACAATTGTAAATGTGAACTTATAGAATTTTCAGAAAGAAG
ACGGGTTAGTGTATCCATTGACTATTTTGTGCTATAACAAATGACTAGTT
TACCCTCTTGCTTTCAATTACAATCGCAATTGTCTTTACGGTTTTGGTTT
TAAATCCTTGCAGGAGGAACTGCTCCAAGAGCATTTTAATGATTTAATCA
AGTTTGTAAAGGCCAAAGCCTCTGAGGACCCAACTTCGAGTCCTGATAAA
CCTATAACTGTTGCGGAAGTGGAGCCACTAGTGAAGGATTTTGCAAGTAG
GTGGAAGGCGGCCATAGAGCTGATGCACAAAGATGTCATCACGTCTTTCA
GTAACTTCTTGTGTGGTATGGAAATCTTGAGAGCTGCTTTGACCCAATTG
TTACTGTACTATACAAGACTCTCGGATTCCATCAAGAGGATCCCTGGTGG
GTCTGCATTGAACAAGGATCTTGTGTCCATATCATCAATCATGTATGAGA
TTAGGAAATATTCGAGGACTTTCTAATTTTTTTGAAGGAGTCTTAGTTAT
CTGTTGGATCTAATTCCAAATCCATAATATCCGATATGTTGTAAAAAAAA
CATTTTTGGACCAAGATTTTTCGCTGTTTTAGGTTCATTTATAGTTGGAA
AATGGTGAATGCTTCAGTTGTAGTTAGACGCAACAAATATCAAATCGATG
GATTTATACACAATGCAGAGAAAGACATAATATTGCACAATTTTTATTTG
CGTATTGATCTTGTTTTACATTTTTCTGTGGATGA
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Annotated Terms
The following terms have been associated with this EST:
Vocabulary: INTERPRO
TermDefinition
IPR007258Vps52