GT624730

EST Overview


Name	GT624730
Unique Name	GT624730
Type	EST
Organism	Lens culinaris (lentil)
Sequence length	370

Unigenes

This EST is part of the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
Lens culinaris unigene v1	Lens culinaris unigene v1	EST

Libraries


Library Name	Type
LIBEST_025390 LCUSE1NG	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
Lens culinaris unigene v1	2010-12-27
Homology Analysis: Lens culinaris unigene v1 vs TAIR 10 peptide	2011-02-03
InterProScan analysis for Lens culinaris unigene v1	2011-01-06

Homology

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BLAST of GT624730 vs. TAIR peptide
Match: AT2G47420.1 (| Symbols: | Ribosomal RNA adenine dimethylase family protein | chr2:19457574-19458777 FORWARD LENGTH=353)

HSP 1 Score: 51.2174 bits (121), Expect = 1.694e-7
Identity = 26/47 (55.32%), Postives = 28/47 (59.57%), Query Frame = 3

Query:  153 GAQSEFKNKVLGVLKEGDFEEKRSXXXXXXXXXXXXXXFNKAGIHFT 293
            G  SEFK KV+ VLKEG FEEKRS              FNK+GIHFT
Sbjct:  307 GETSEFKEKVMNVLKEGGFEEKRSSKLSQQEFLYLLSLFNKSGIHFT 353

The following BLAST results are available for this feature:

BLAST of GT624730 vs. TAIR peptide

BLAST of GT624730 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Lens culinaris unigene v1 vs TAIR 10 peptide)
Total hits: 1


Match Name	E-value	Identity	Description
AT2G47420.1	1.694e-7	55.32	\| Symbols: \| Ribosomal RNA adenine dimethylase fa...	[more]

InterPro

Analysis Name: InterProScan analysis for Lens culinaris unigene v1
Date Performed: 2011-01-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	SEG	seg	seg	coord: 24..48 score: NAcoord: 75..88 score

Properties


Property Name	Value
Singlet in analysis	Lens culinaris unigene v1

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>GT624730 ID=GT624730; Name=GT624730; organism=Lens culinaris; type=EST; length=370bp
AAATCTCTCAAGAAGGCTCGTCGATGGAAGCAGACAATAAAGTTGACTTC
TCAAATTTTGTTGATTTTATCGACGATCAGGAGATGGAGGTGGATGATGA
TGGAGTAGATGATGATGAGGATGAAATGGAGGTTGAAGACGGGGTTGCAA
ATGGGGCTCAATCTGAATTCAAAAACAAGGTTTTAGGTGTTCTTAAAGAA
GGAGATTTTGAAGAGAAGAGGTCGTCCAAACTCTCCTTGCAGGAGTTCTT
ATATCTGCTTTCGCTATTTAACAAAGCTGGAATTCACTTTACCTGATTTT
ATATTTACCATTATCCAATTTTGTTTACAGTTTTTCAATTGATGATAAGT
TAGTGATGTTTTTTTTCTTT

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