GT623938

EST Overview
NameGT623938
Unique NameGT623938
TypeEST
OrganismLens culinaris (lentil)
Sequence length755
Unigenes
This EST is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Lens culinaris unigene v1Lens culinaris unigene v1EST
Libraries
Library NameType
LIBEST_025390 LCUSE1NGcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
Lens culinaris unigene v12010-12-27
Homology Analysis: Lens culinaris unigene v1 vs Trembl2010-12-28
InterProScan analysis for Lens culinaris unigene v12011-01-06
Homology
BLAST of GT623938 vs. TrEMBL
Match: C6TAU6_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 6.882e-23
Identity = 39/86 (45.35%), Postives = 58/86 (67.44%), Query Frame = 2
Query:   11 REGHHQDTEFDPFPSIQQVSQHITDTNVVIHDISEPRELPKENIVAA----VENSDSLRNIDLNTNMNENDDKKANTVANLTVTIP 256
            RE +HQD E +P  S+Q  +   T+T++ + + SE +E+PKE  +AA    V ++DSLRNIDLN   NENDDKKA+  A+ + ++P
Sbjct:  159 RETYHQDAESEPCTSVQPSNPQNTNTSIAMDNGSESKEIPKEENIAAPVVPVVSTDSLRNIDLNAITNENDDKKASAEADASASVP 244          

HSP 2 Score: 56.225 bits (134), Expect = 6.882e-23
Identity = 25/37 (67.57%), Postives = 28/37 (75.68%), Query Frame = 3
Query:  360 PHCLNLLQQTACIMKKFRDGPFLRWTRWPLIRCSLHS 470
            PHCLN  Q+ +  MKKFR G FL WTRWPLI CSLH+
Sbjct:  248 PHCLNPQQRAS--MKKFRGGHFLMWTRWPLIHCSLHN 282          
BLAST of GT623938 vs. TrEMBL
Match: B9SHT5_RICCO (Negative cofactor 2 transcriptional co-repressor, putative OS=Ricinus communis GN=RCOM_0621420 PE=4 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 1.158e-14
Identity = 55/153 (35.95%), Postives = 74/153 (48.37%), Query Frame = 2
Query:   11 REGHHQDTEFDPFPSIQQVSQHITDTNVVIHDISEPRELPKENIVAAVENSDSLRNIDLNTNMNENDDKKANTVANLTVTIPEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGKTSLSEPAPADSMHHEEIPGWSLSEVDKMAIDTMQLAQ 469
            RE  H+D E +P  ++QQ + + ++T +V+ + SE  EL KEN++     +   RN DLN  ++ENDD KA T A  T T                                       S  AP    +HEE PGWSLSE+DKMAID +QLAQ
Sbjct:  160 RESSHRDIESEPSTTLQQSATNNSNTGMVVENDSES-ELLKENMIVNDGANAPERNFDLNAEVSENDDAKATTAAATTTTTAAAATTTTAAATTITTTSTTIMV------------AESSSVAPVAEPNHEEYPGWSLSEMDKMAIDPLQLAQ 299          
The following BLAST results are available for this feature:
BLAST of GT623938 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Lens culinaris unigene v1 vs Trembl)
Total hits: 2
Match NameE-valueIdentityDescription
C6TAU6_SOYBN6.882e-2345.35Putative uncharacterized protein OS=Glycine max PE... [more]
B9SHT5_RICCO1.158e-1435.95Negative cofactor 2 transcriptional co-repressor, ... [more]
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InterPro
Analysis Name: InterProScan analysis for Lens culinaris unigene v1
Date Performed: 2011-01-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSEGsegsegcoord: 87..117
score: NAcoord: 159..170
score
NoneNo IPR availableSEGsegsegcoord: 17..51
score
NoneNo IPR availableSEGsegsegcoord: 16..48
score
NoneNo IPR availableSEGsegsegcoord: 10..21
score
NoneNo IPR availableSEGsegsegcoord: 16..38
score
NoneNo IPR availableSEGsegsegcoord: 26..37
score

Properties
Property NameValue
Singlet in analysisLens culinaris unigene v1
Sequences
The following sequences are available for this feature:

EST sequence

>GT623938 ID=GT623938; Name=GT623938; organism=Lens culinaris; type=EST; length=755bp
GGCTAGTCTAAGAGAGGGACATCATCAGGATACTGAGTTTGATCCCTTTC
CTTCTATTCAGCAAGTTAGCCAACATATTACAGATACAAATGTGGTTATA
CATGATATCTCAGAGCCAAGGGAGTTACCAAAGGAGAATATAGTCGCTGC
TGTTGAAAACTCCGATTCACTCCGTAATATTGATCTGAATACCAATATGA
ACGAAAATGATGACAAAAAGGCCAACACAGTTGCTAATCTCACAGTCACT
ATTCCTGAAGCCGATAATCCCGATGCTGCTAATCCTGCAACTGCTAATTC
CGTTGCTGCAAATCCTGAAGCTGCTAATCCTGCAGCCGCAGTTCCTGAAG
CCGGGAAAACCTCACTGTCTGAACCTGCTCCAGCAGACAGCATGCATCAT
GAAGAAATTCCGGGATGGTCCCTTTCTGAGGTGGACAAGATGGCCATTGA
TACGATGCAGCTTGCACAGCGAATGGAAGAGGATGACGAAGATTATGACG
AGGAGGATGAGTGAATTGTAGTATTTCCGAGGGGGAGATTAGATTAGTAG
CTAAAAGCTCATTATAAGTGTAGAAAAGTATATACTAGCTGTCATAACAA
GTCTTATGTTGACTGAAAAAAAGGGTTCTTAATCTGAATGGCCCTTGTGT
TTAATCTGGTTTGTCTATGTTGTATGTTCTCAGAAGCTGTTGTATCTTTA
TTTCCCTTAACAAGTATGTTAGGTTGGTGTACGTTTAGGCCTGTAGTGTA
TATTA
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