GT623399

EST Overview
NameGT623399
Unique NameGT623399
TypeEST
OrganismLens culinaris (lentil)
Sequence length319
Unigenes
This EST is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Lens culinaris unigene v1Lens culinaris unigene v1EST
Libraries
Library NameType
LIBEST_025390 LCUSE1NGcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
Lens culinaris unigene v12010-12-27
Homology Analysis: Lens culinaris unigene v1 vs Trembl2010-12-28
Homology Analysis: Lens culinaris unigene v1 vs TAIR 10 peptide2011-02-03
InterProScan analysis for Lens culinaris unigene v12011-01-06
Homology
BLAST of GT623399 vs. TrEMBL
Match: B9H4J0_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_1079544 PE=4 SV=1)

HSP 1 Score: 62.3882 bits (150), Expect = 1.700e-8
Identity = 28/45 (62.22%), Postives = 35/45 (77.78%), Query Frame = 1
Query:    4 TLKESTHLTAVGHPQHDGSNSRIYTTRYEMSYSGSGWKIVEGAVL 138
            TLKEST LT   HP+++ SN + YTTRYE+S S SGWKI EGA++
Sbjct:  723 TLKESTRLTDEVHPENNASNVKTYTTRYELSCSNSGWKITEGAIM 767          
BLAST of GT623399 vs. TrEMBL
Match: D7U3Q2_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_33.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00022614001 PE=4 SV=1)

HSP 1 Score: 61.6178 bits (148), Expect = 2.900e-8
Identity = 29/46 (63.04%), Postives = 34/46 (73.91%), Query Frame = 1
Query:    4 TLKESTHLTAVGHPQHDGSNSRIYTTRYEMSYSGSGWKIVEGAVLE 141
            TL+ES  LT   HP+H+ S S  YTTRYEMS + SGWKI EGAVL+
Sbjct:  754 TLEESARLTDTVHPEHNDSYSTTYTTRYEMSCNSSGWKITEGAVLK 799          
BLAST of GT623399 vs. TrEMBL
Match: A5BDQ0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_009566 PE=4 SV=1)

HSP 1 Score: 59.3066 bits (142), Expect = 1.439e-7
Identity = 28/46 (60.87%), Postives = 33/46 (71.74%), Query Frame = 1
Query:    4 TLKESTHLTAVGHPQHDGSNSRIYTTRYEMSYSGSGWKIVEGAVLE 141
            TL+ES  LT   H +H+ S S  YTTRYEMS + SGWKI EGAVL+
Sbjct:  743 TLEESARLTDTXHQEHNDSYSTTYTTRYEMSCNNSGWKITEGAVLK 788          
BLAST of GT623399 vs. TAIR peptide
Match: AT5G42480.1 (| Symbols: ARC6 | Chaperone DnaJ-domain superfamily protein | chr5:16985295-16988332 FORWARD LENGTH=801)

HSP 1 Score: 54.6842 bits (130), Expect = 1.358e-8
Identity = 25/47 (53.19%), Postives = 36/47 (76.60%), Query Frame = 1
Query:    4 TLKESTHLTAVGHPQHDGSNSRIYTTRYEMSYSGSGWKIVEGAVLES 144
            TL+ES  L+ + HP+++ ++ R YTTRYE+ +S SGWKI EG+VL S
Sbjct:  755 TLEESACLSDLVHPENNATDVRTYTTRYEVFWSKSGWKITEGSVLAS 801          
The following BLAST results are available for this feature:
BLAST of GT623399 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Lens culinaris unigene v1 vs Trembl)
Total hits: 3
Match NameE-valueIdentityDescription
B9H4J0_POPTR1.700e-862.22Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]
D7U3Q2_VITVI2.900e-863.04Whole genome shotgun sequence of line PN40024, sca... [more]
A5BDQ0_VITVI1.439e-760.87Putative uncharacterized protein OS=Vitis vinifera... [more]
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BLAST of GT623399 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Lens culinaris unigene v1 vs TAIR 10 peptide)
Total hits: 1
Match NameE-valueIdentityDescription
AT5G42480.11.358e-853.19| Symbols: ARC6 | Chaperone DnaJ-domain superfamil... [more]
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InterPro
Analysis Name: InterProScan analysis for Lens culinaris unigene v1
Date Performed: 2011-01-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSEGsegsegcoord: 7..19
score

Properties
Property NameValue
Singlet in analysisLens culinaris unigene v1
Sequences
The following sequences are available for this feature:

EST sequence

>GT623399 ID=GT623399; Name=GT623399; organism=Lens culinaris; type=EST; length=319bp
ACAACTCTCAAAGAATCTACACACCTCACTGCTGTAGGTCATCCACAACA
CGATGGTTCTAACAGCAGAATCTACACAACAAGATATGAAATGTCTTATT
CAGGTTCAGGGTGGAAAATTGTTGAAGGAGCTGTCCTTGAGTCATAATTA
GGTTTTGTAACTTGTAATATATGTCAGGTTAGTAAACTTGAGTGTCCCCT
TAAGTCTATCTCCACTGTATTGTATGTTCCTATTGTTTTGTGCATTCTTC
AAGCACTCATGTAGTCAGGTTGTAAATACTTGCCGGGCATTTAATCAAAT
AATTATCTGGTTAGGATGT
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