GT624260
EST Overview
Unigenes
This EST is part of the following unigenes:
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of GT624260 vs. TrEMBL
Match: D7TS90_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_51.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00029076001 PE=4 SV=1) HSP 1 Score: 172.17 bits (435), Expect = 3.043e-41 Identity = 84/87 (96.55%), Postives = 86/87 (98.85%), Query Frame = 1 Query: 169 MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITTEGRRITKLDQILLNGNNIAILVPGGSPDPE 429 M+ NPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEIT+EGRRITKLDQILLNGNNIAILVPGGSPDPE Sbjct: 1 MSTNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITSEGRRITKLDQILLNGNNIAILVPGGSPDPE 87
BLAST of GT624260 vs. TrEMBL
Match: C6SZ20_SOYBN (Putative uncharacterized protein OS=Glycine max PE=4 SV=1) HSP 1 Score: 170.629 bits (431), Expect = 8.854e-41 Identity = 84/87 (96.55%), Postives = 85/87 (97.70%), Query Frame = 1 Query: 169 MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITTEGRRITKLDQILLNGNNIAILVPGGSPDPE 429 MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEIT EGRRITKLDQILLNGNNIAILVPGGSP+ E Sbjct: 1 MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGGSPESE 87
BLAST of GT624260 vs. TrEMBL
Match: A9PC96_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_557672 PE=4 SV=1) HSP 1 Score: 170.629 bits (431), Expect = 8.854e-41 Identity = 86/88 (97.73%), Postives = 86/88 (97.73%), Query Frame = 1 Query: 169 MAN-NPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITTEGRRITKLDQILLNGNNIAILVPGGSPDPE 429 MAN NPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEIT EGRRITKLDQILLNGNNIAILVPGGSPDPE Sbjct: 1 MANTNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGGSPDPE 88
BLAST of GT624260 vs. TrEMBL
Match: C6T5W6_SOYBN (Putative uncharacterized protein OS=Glycine max PE=4 SV=1) HSP 1 Score: 169.088 bits (427), Expect = 2.576e-40 Identity = 83/87 (95.40%), Postives = 84/87 (96.55%), Query Frame = 1 Query: 169 MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITTEGRRITKLDQILLNGNNIAILVPGGSPDPE 429 MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVY NMVLEDVTEYEIT EGRRITKLDQILLNGNNIAILVPGGSP+ E Sbjct: 1 MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYANMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGGSPESE 87
BLAST of GT624260 vs. TrEMBL
Match: Q9FKB0_ARATH (At5g48870 OS=Arabidopsis thaliana GN=SAD1 PE=4 SV=1) HSP 1 Score: 165.236 bits (417), Expect = 3.720e-39 Identity = 80/85 (94.12%), Postives = 83/85 (97.65%), Query Frame = 1 Query: 169 MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITTEGRRITKLDQILLNGNNIAILVPGGSPD 423 MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVG L+GFDVYVNMVLEDVTEYEIT EGRR+TKLDQILLNGNNIAILVPGGSP+ Sbjct: 1 MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGILKGFDVYVNMVLEDVTEYEITAEGRRVTKLDQILLNGNNIAILVPGGSPE 85
BLAST of GT624260 vs. TrEMBL
Match: Q0WMZ9_ARATH (Sm-like protein OS=Arabidopsis thaliana GN=At5g48870 PE=4 SV=1) HSP 1 Score: 165.236 bits (417), Expect = 3.720e-39 Identity = 80/85 (94.12%), Postives = 83/85 (97.65%), Query Frame = 1 Query: 169 MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITTEGRRITKLDQILLNGNNIAILVPGGSPD 423 MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVG L+GFDVYVNMVLEDVTEYEIT EGRR+TKLDQILLNGNNIAILVPGGSP+ Sbjct: 1 MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGILKGFDVYVNMVLEDVTEYEITAEGRRVTKLDQILLNGNNIAILVPGGSPE 85
BLAST of GT624260 vs. TrEMBL
Match: D7MMN2_ARALY (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_917817 PE=4 SV=1) HSP 1 Score: 163.31 bits (412), Expect = 1.414e-38 Identity = 79/85 (92.94%), Postives = 83/85 (97.65%), Query Frame = 1 Query: 169 MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITTEGRRITKLDQILLNGNNIAILVPGGSPD 423 MA+NPSQLLPSELIDRCIGSKIWVIMKGDKELVG L+GFDVYVNMVLEDVTEYEIT EGRR+TKLDQILLNGNNIAILVPGGSP+ Sbjct: 1 MASNPSQLLPSELIDRCIGSKIWVIMKGDKELVGILKGFDVYVNMVLEDVTEYEITAEGRRVTKLDQILLNGNNIAILVPGGSPE 85
BLAST of GT624260 vs. TrEMBL
Match: A9NKL0_PICSI (Putative uncharacterized protein OS=Picea sitchensis PE=4 SV=1) HSP 1 Score: 162.925 bits (411), Expect = 1.846e-38 Identity = 79/85 (92.94%), Postives = 83/85 (97.65%), Query Frame = 1 Query: 169 MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITTEGRRITKLDQILLNGNNIAILVPGGSPD 423 M++NPS LLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEIT+EGRRITKLDQILLNGNNIAILVPGG P+ Sbjct: 1 MSHNPSHLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITSEGRRITKLDQILLNGNNIAILVPGGGPE 85
BLAST of GT624260 vs. TrEMBL
Match: A9RTV2_PHYPA (Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_205524 PE=4 SV=1) HSP 1 Score: 160.229 bits (404), Expect = 1.197e-37 Identity = 77/83 (92.77%), Postives = 81/83 (97.59%), Query Frame = 1 Query: 175 NNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITTEGRRITKLDQILLNGNNIAILVPGGSPD 423 NNPS L+PSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEIT+EGRRITKL+QILLNGNNIAILVPGG P+ Sbjct: 4 NNPSHLMPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITSEGRRITKLEQILLNGNNIAILVPGGGPE 86
BLAST of GT624260 vs. TrEMBL
Match: Q60E54_ORYSJ (Os05g0389300 protein OS=Oryza sativa subsp. japonica GN=OSJNBa0073E05.22 PE=4 SV=1) HSP 1 Score: 159.844 bits (403), Expect = 1.563e-37 Identity = 79/82 (96.34%), Postives = 79/82 (96.34%), Query Frame = 1 Query: 175 NNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITTEGRRITKLDQILLNGNNIAILVPGGSP 420 NNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTL GFDVYVNMVLEDVTEYE T EGRRITKLDQILLNGNNIAILVPGGSP Sbjct: 4 NNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLCGFDVYVNMVLEDVTEYEYTAEGRRITKLDQILLNGNNIAILVPGGSP 85
BLAST of GT624260 vs. SwissProt
Match: LSM5_PONAB (U6 snRNA-associated Sm-like protein LSm5 OS=Pongo abelii GN=LSM5 PE=3 SV=3) HSP 1 Score: 132.88 bits (333), Expect = 1.415e-30 Identity = 63/79 (79.75%), Postives = 72/79 (91.14%), Query Frame = 1 Query: 178 NPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITTEGRRITKLDQILLNGNNIAILVPGG 414 NPSQLLP EL+D+CIGS+I ++MK DKE+VGTL GFD +VNMVLEDVTE+EIT EGRRITKLDQILLNGNNI +LVPGG Sbjct: 8 NPSQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRITKLDQILLNGNNITMLVPGG 86
BLAST of GT624260 vs. SwissProt
Match: LSM5_MOUSE (U6 snRNA-associated Sm-like protein LSm5 OS=Mus musculus GN=Lsm5 PE=3 SV=2) HSP 1 Score: 132.88 bits (333), Expect = 1.415e-30 Identity = 63/79 (79.75%), Postives = 72/79 (91.14%), Query Frame = 1 Query: 178 NPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITTEGRRITKLDQILLNGNNIAILVPGG 414 NPSQLLP EL+D+CIGS+I ++MK DKE+VGTL GFD +VNMVLEDVTE+EIT EGRRITKLDQILLNGNNI +LVPGG Sbjct: 8 NPSQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRITKLDQILLNGNNITMLVPGG 86
BLAST of GT624260 vs. SwissProt
Match: LSM5_HUMAN (U6 snRNA-associated Sm-like protein LSm5 OS=Homo sapiens GN=LSM5 PE=1 SV=3) HSP 1 Score: 132.88 bits (333), Expect = 1.415e-30 Identity = 63/79 (79.75%), Postives = 72/79 (91.14%), Query Frame = 1 Query: 178 NPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITTEGRRITKLDQILLNGNNIAILVPGG 414 NPSQLLP EL+D+CIGS+I ++MK DKE+VGTL GFD +VNMVLEDVTE+EIT EGRRITKLDQILLNGNNI +LVPGG Sbjct: 8 NPSQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRITKLDQILLNGNNITMLVPGG 86
BLAST of GT624260 vs. SwissProt
Match: LSM5_BOVIN (U6 snRNA-associated Sm-like protein LSm5 OS=Bos taurus GN=LSM5 PE=3 SV=3) HSP 1 Score: 132.88 bits (333), Expect = 1.415e-30 Identity = 63/79 (79.75%), Postives = 72/79 (91.14%), Query Frame = 1 Query: 178 NPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITTEGRRITKLDQILLNGNNIAILVPGG 414 NPSQLLP EL+D+CIGS+I ++MK DKE+VGTL GFD +VNMVLEDVTE+EIT EGRRITKLDQILLNGNNI +LVPGG Sbjct: 8 NPSQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRITKLDQILLNGNNITMLVPGG 86
BLAST of GT624260 vs. SwissProt
Match: LSM5_DICDI (Probable U6 snRNA-associated Sm-like protein LSm5 OS=Dictyostelium discoideum GN=lsm5 PE=3 SV=1) HSP 1 Score: 115.161 bits (287), Expect = 3.054e-25 Identity = 53/77 (68.83%), Postives = 63/77 (81.82%), Query Frame = 1 Query: 184 SQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITTEGRRITKLDQILLNGNNIAILVPGG 414 SQLLP ELI++CIGS+IW+ MK DKE VGTL GFD YVN+ L+DVTEYE T EG + KLD ILLNGN++ +LVPGG Sbjct: 14 SQLLPLELIEKCIGSRIWIAMKNDKEFVGTLLGFDAYVNIFLKDVTEYEYTPEGLKTVKLDNILLNGNHVCLLVPGG 90
BLAST of GT624260 vs. SwissProt
Match: LSM5_SCHPO (U6 snRNA-associated Sm-like protein LSm5 OS=Schizosaccharomyces pombe GN=lsm5 PE=2 SV=2) HSP 1 Score: 93.5893 bits (231), Expect = 9.516e-19 Identity = 44/78 (56.41%), Postives = 58/78 (74.36%), Query Frame = 1 Query: 190 LLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITTEGRRITKLDQILLNGNNIAILVPGGSPD 423 +LP ELID+CIGS +WVIMK ++E GTL GFD YVN+VL+DVTEY+ T K ++LLNGN + +L+PGG P+ Sbjct: 5 ILPLELIDKCIGSNLWVIMKSEREFAGTLVGFDDYVNIVLKDVTEYDTVTGVTE--KHSEMLLNGNGMCMLIPGGKPE 80
BLAST of GT624260 vs. SwissProt
Match: LSM5_YEAST (U6 snRNA-associated Sm-like protein LSm5 OS=Saccharomyces cerevisiae GN=LSM5 PE=1 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 1.331e-12 Identity = 39/85 (45.88%), Postives = 57/85 (67.06%), Query Frame = 1 Query: 187 QLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITTEGR-RITKLDQ----ILLNGNNIAILVPGGSPDP 426 ++LP E+ID+ I K+ ++++ ++E GTL GFD +VN++LED E+ I E R K+ Q +LL+GNNIAILVPGG P Sbjct: 5 EILPLEVIDKTINQKVLIVLQSNREFEGTLVGFDDFVNVILEDAVEWLIDPEDESRNEKVMQHHGRMLLSGNNIAILVPGGKKTP 89
BLAST of GT624260 vs. TAIR peptide
Match: AT5G48870.1 (| Symbols: SAD1 | Small nuclear ribonucleoprotein family protein | chr5:19813407-19814362 FORWARD LENGTH=88) HSP 1 Score: 165.236 bits (417), Expect = 2.638e-41 Identity = 80/85 (94.12%), Postives = 83/85 (97.65%), Query Frame = 1 Query: 169 MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITTEGRRITKLDQILLNGNNIAILVPGGSPD 423 MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVG L+GFDVYVNMVLEDVTEYEIT EGRR+TKLDQILLNGNNIAILVPGGSP+ Sbjct: 1 MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGILKGFDVYVNMVLEDVTEYEITAEGRRVTKLDQILLNGNNIAILVPGGSPE 85 The following BLAST results are available for this feature:
BLAST of GT624260 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Lens culinaris unigene v1 vs Trembl) Total hits: 10
BLAST of GT624260 vs. SwissProt
Analysis Date: 2010-12-28 (Homology Analysis: Lens culinaris unigene v1 vs Swissprot) Total hits: 7
BLAST of GT624260 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Lens culinaris unigene v1 vs TAIR 10 peptide) Total hits: 1
InterPro
Analysis Name: InterProScan analysis for Lens culinaris unigene v1
Date Performed: 2011-01-06
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >GT624260 ID=GT624260; Name=GT624260; organism=Lens culinaris; type=EST; length=642bpback to top |