GT624260

EST Overview
NameGT624260
Unique NameGT624260
TypeEST
OrganismLens culinaris (lentil)
Sequence length642
Unigenes
This EST is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Lens culinaris unigene v1Lens culinaris unigene v1EST
Libraries
Library NameType
LIBEST_025390 LCUSE1NGcdna_library
Homology
BLAST of GT624260 vs. TrEMBL
Match: D7TS90_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_51.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00029076001 PE=4 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 3.043e-41
Identity = 84/87 (96.55%), Postives = 86/87 (98.85%), Query Frame = 1
Query:  169 MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITTEGRRITKLDQILLNGNNIAILVPGGSPDPE 429
            M+ NPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEIT+EGRRITKLDQILLNGNNIAILVPGGSPDPE
Sbjct:    1 MSTNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITSEGRRITKLDQILLNGNNIAILVPGGSPDPE 87          
BLAST of GT624260 vs. TrEMBL
Match: C6SZ20_SOYBN (Putative uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 8.854e-41
Identity = 84/87 (96.55%), Postives = 85/87 (97.70%), Query Frame = 1
Query:  169 MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITTEGRRITKLDQILLNGNNIAILVPGGSPDPE 429
            MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEIT EGRRITKLDQILLNGNNIAILVPGGSP+ E
Sbjct:    1 MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGGSPESE 87          
BLAST of GT624260 vs. TrEMBL
Match: A9PC96_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_557672 PE=4 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 8.854e-41
Identity = 86/88 (97.73%), Postives = 86/88 (97.73%), Query Frame = 1
Query:  169 MAN-NPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITTEGRRITKLDQILLNGNNIAILVPGGSPDPE 429
            MAN NPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEIT EGRRITKLDQILLNGNNIAILVPGGSPDPE
Sbjct:    1 MANTNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGGSPDPE 88          
BLAST of GT624260 vs. TrEMBL
Match: C6T5W6_SOYBN (Putative uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 2.576e-40
Identity = 83/87 (95.40%), Postives = 84/87 (96.55%), Query Frame = 1
Query:  169 MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITTEGRRITKLDQILLNGNNIAILVPGGSPDPE 429
            MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVY NMVLEDVTEYEIT EGRRITKLDQILLNGNNIAILVPGGSP+ E
Sbjct:    1 MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYANMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGGSPESE 87          
BLAST of GT624260 vs. TrEMBL
Match: Q9FKB0_ARATH (At5g48870 OS=Arabidopsis thaliana GN=SAD1 PE=4 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 3.720e-39
Identity = 80/85 (94.12%), Postives = 83/85 (97.65%), Query Frame = 1
Query:  169 MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITTEGRRITKLDQILLNGNNIAILVPGGSPD 423
            MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVG L+GFDVYVNMVLEDVTEYEIT EGRR+TKLDQILLNGNNIAILVPGGSP+
Sbjct:    1 MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGILKGFDVYVNMVLEDVTEYEITAEGRRVTKLDQILLNGNNIAILVPGGSPE 85          
BLAST of GT624260 vs. TrEMBL
Match: Q0WMZ9_ARATH (Sm-like protein OS=Arabidopsis thaliana GN=At5g48870 PE=4 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 3.720e-39
Identity = 80/85 (94.12%), Postives = 83/85 (97.65%), Query Frame = 1
Query:  169 MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITTEGRRITKLDQILLNGNNIAILVPGGSPD 423
            MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVG L+GFDVYVNMVLEDVTEYEIT EGRR+TKLDQILLNGNNIAILVPGGSP+
Sbjct:    1 MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGILKGFDVYVNMVLEDVTEYEITAEGRRVTKLDQILLNGNNIAILVPGGSPE 85          
BLAST of GT624260 vs. TrEMBL
Match: D7MMN2_ARALY (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_917817 PE=4 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.414e-38
Identity = 79/85 (92.94%), Postives = 83/85 (97.65%), Query Frame = 1
Query:  169 MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITTEGRRITKLDQILLNGNNIAILVPGGSPD 423
            MA+NPSQLLPSELIDRCIGSKIWVIMKGDKELVG L+GFDVYVNMVLEDVTEYEIT EGRR+TKLDQILLNGNNIAILVPGGSP+
Sbjct:    1 MASNPSQLLPSELIDRCIGSKIWVIMKGDKELVGILKGFDVYVNMVLEDVTEYEITAEGRRVTKLDQILLNGNNIAILVPGGSPE 85          
BLAST of GT624260 vs. TrEMBL
Match: A9NKL0_PICSI (Putative uncharacterized protein OS=Picea sitchensis PE=4 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.846e-38
Identity = 79/85 (92.94%), Postives = 83/85 (97.65%), Query Frame = 1
Query:  169 MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITTEGRRITKLDQILLNGNNIAILVPGGSPD 423
            M++NPS LLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEIT+EGRRITKLDQILLNGNNIAILVPGG P+
Sbjct:    1 MSHNPSHLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITSEGRRITKLDQILLNGNNIAILVPGGGPE 85          
BLAST of GT624260 vs. TrEMBL
Match: A9RTV2_PHYPA (Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_205524 PE=4 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 1.197e-37
Identity = 77/83 (92.77%), Postives = 81/83 (97.59%), Query Frame = 1
Query:  175 NNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITTEGRRITKLDQILLNGNNIAILVPGGSPD 423
            NNPS L+PSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEIT+EGRRITKL+QILLNGNNIAILVPGG P+
Sbjct:    4 NNPSHLMPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITSEGRRITKLEQILLNGNNIAILVPGGGPE 86          
BLAST of GT624260 vs. TrEMBL
Match: Q60E54_ORYSJ (Os05g0389300 protein OS=Oryza sativa subsp. japonica GN=OSJNBa0073E05.22 PE=4 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.563e-37
Identity = 79/82 (96.34%), Postives = 79/82 (96.34%), Query Frame = 1
Query:  175 NNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITTEGRRITKLDQILLNGNNIAILVPGGSP 420
            NNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTL GFDVYVNMVLEDVTEYE T EGRRITKLDQILLNGNNIAILVPGGSP
Sbjct:    4 NNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLCGFDVYVNMVLEDVTEYEYTAEGRRITKLDQILLNGNNIAILVPGGSP 85          
BLAST of GT624260 vs. SwissProt
Match: LSM5_PONAB (U6 snRNA-associated Sm-like protein LSm5 OS=Pongo abelii GN=LSM5 PE=3 SV=3)

HSP 1 Score: 132.88 bits (333), Expect = 1.415e-30
Identity = 63/79 (79.75%), Postives = 72/79 (91.14%), Query Frame = 1
Query:  178 NPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITTEGRRITKLDQILLNGNNIAILVPGG 414
            NPSQLLP EL+D+CIGS+I ++MK DKE+VGTL GFD +VNMVLEDVTE+EIT EGRRITKLDQILLNGNNI +LVPGG
Sbjct:    8 NPSQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRITKLDQILLNGNNITMLVPGG 86          
BLAST of GT624260 vs. SwissProt
Match: LSM5_MOUSE (U6 snRNA-associated Sm-like protein LSm5 OS=Mus musculus GN=Lsm5 PE=3 SV=2)

HSP 1 Score: 132.88 bits (333), Expect = 1.415e-30
Identity = 63/79 (79.75%), Postives = 72/79 (91.14%), Query Frame = 1
Query:  178 NPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITTEGRRITKLDQILLNGNNIAILVPGG 414
            NPSQLLP EL+D+CIGS+I ++MK DKE+VGTL GFD +VNMVLEDVTE+EIT EGRRITKLDQILLNGNNI +LVPGG
Sbjct:    8 NPSQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRITKLDQILLNGNNITMLVPGG 86          
BLAST of GT624260 vs. SwissProt
Match: LSM5_HUMAN (U6 snRNA-associated Sm-like protein LSm5 OS=Homo sapiens GN=LSM5 PE=1 SV=3)

HSP 1 Score: 132.88 bits (333), Expect = 1.415e-30
Identity = 63/79 (79.75%), Postives = 72/79 (91.14%), Query Frame = 1
Query:  178 NPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITTEGRRITKLDQILLNGNNIAILVPGG 414
            NPSQLLP EL+D+CIGS+I ++MK DKE+VGTL GFD +VNMVLEDVTE+EIT EGRRITKLDQILLNGNNI +LVPGG
Sbjct:    8 NPSQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRITKLDQILLNGNNITMLVPGG 86          
BLAST of GT624260 vs. SwissProt
Match: LSM5_BOVIN (U6 snRNA-associated Sm-like protein LSm5 OS=Bos taurus GN=LSM5 PE=3 SV=3)

HSP 1 Score: 132.88 bits (333), Expect = 1.415e-30
Identity = 63/79 (79.75%), Postives = 72/79 (91.14%), Query Frame = 1
Query:  178 NPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITTEGRRITKLDQILLNGNNIAILVPGG 414
            NPSQLLP EL+D+CIGS+I ++MK DKE+VGTL GFD +VNMVLEDVTE+EIT EGRRITKLDQILLNGNNI +LVPGG
Sbjct:    8 NPSQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRITKLDQILLNGNNITMLVPGG 86          
BLAST of GT624260 vs. SwissProt
Match: LSM5_DICDI (Probable U6 snRNA-associated Sm-like protein LSm5 OS=Dictyostelium discoideum GN=lsm5 PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.054e-25
Identity = 53/77 (68.83%), Postives = 63/77 (81.82%), Query Frame = 1
Query:  184 SQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITTEGRRITKLDQILLNGNNIAILVPGG 414
            SQLLP ELI++CIGS+IW+ MK DKE VGTL GFD YVN+ L+DVTEYE T EG +  KLD ILLNGN++ +LVPGG
Sbjct:   14 SQLLPLELIEKCIGSRIWIAMKNDKEFVGTLLGFDAYVNIFLKDVTEYEYTPEGLKTVKLDNILLNGNHVCLLVPGG 90          
BLAST of GT624260 vs. SwissProt
Match: LSM5_SCHPO (U6 snRNA-associated Sm-like protein LSm5 OS=Schizosaccharomyces pombe GN=lsm5 PE=2 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 9.516e-19
Identity = 44/78 (56.41%), Postives = 58/78 (74.36%), Query Frame = 1
Query:  190 LLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITTEGRRITKLDQILLNGNNIAILVPGGSPD 423
            +LP ELID+CIGS +WVIMK ++E  GTL GFD YVN+VL+DVTEY+  T      K  ++LLNGN + +L+PGG P+
Sbjct:    5 ILPLELIDKCIGSNLWVIMKSEREFAGTLVGFDDYVNIVLKDVTEYDTVTGVTE--KHSEMLLNGNGMCMLIPGGKPE 80          
BLAST of GT624260 vs. SwissProt
Match: LSM5_YEAST (U6 snRNA-associated Sm-like protein LSm5 OS=Saccharomyces cerevisiae GN=LSM5 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.331e-12
Identity = 39/85 (45.88%), Postives = 57/85 (67.06%), Query Frame = 1
Query:  187 QLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITTEGR-RITKLDQ----ILLNGNNIAILVPGGSPDP 426
            ++LP E+ID+ I  K+ ++++ ++E  GTL GFD +VN++LED  E+ I  E   R  K+ Q    +LL+GNNIAILVPGG   P
Sbjct:    5 EILPLEVIDKTINQKVLIVLQSNREFEGTLVGFDDFVNVILEDAVEWLIDPEDESRNEKVMQHHGRMLLSGNNIAILVPGGKKTP 89          
BLAST of GT624260 vs. TAIR peptide
Match: AT5G48870.1 (| Symbols: SAD1 | Small nuclear ribonucleoprotein family protein | chr5:19813407-19814362 FORWARD LENGTH=88)

HSP 1 Score: 165.236 bits (417), Expect = 2.638e-41
Identity = 80/85 (94.12%), Postives = 83/85 (97.65%), Query Frame = 1
Query:  169 MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITTEGRRITKLDQILLNGNNIAILVPGGSPD 423
            MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVG L+GFDVYVNMVLEDVTEYEIT EGRR+TKLDQILLNGNNIAILVPGGSP+
Sbjct:    1 MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGILKGFDVYVNMVLEDVTEYEITAEGRRVTKLDQILLNGNNIAILVPGGSPE 85          
The following BLAST results are available for this feature:
BLAST of GT624260 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Lens culinaris unigene v1 vs Trembl)
Total hits: 10
Match NameE-valueIdentityDescription
D7TS90_VITVI3.043e-4196.55Whole genome shotgun sequence of line PN40024, sca... [more]
C6SZ20_SOYBN8.854e-4196.55Putative uncharacterized protein OS=Glycine max PE... [more]
A9PC96_POPTR8.854e-4197.73Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]
C6T5W6_SOYBN2.576e-4095.40Putative uncharacterized protein OS=Glycine max PE... [more]
Q9FKB0_ARATH3.720e-3994.12At5g48870 OS=Arabidopsis thaliana GN=SAD1 PE=4 SV=... [more]
Q0WMZ9_ARATH3.720e-3994.12Sm-like protein OS=Arabidopsis thaliana GN=At5g488... [more]
D7MMN2_ARALY1.414e-3892.94Putative uncharacterized protein OS=Arabidopsis ly... [more]
A9NKL0_PICSI1.846e-3892.94Putative uncharacterized protein OS=Picea sitchens... [more]
A9RTV2_PHYPA1.197e-3792.77Predicted protein OS=Physcomitrella patens subsp. ... [more]
Q60E54_ORYSJ1.563e-3796.34Os05g0389300 protein OS=Oryza sativa subsp. japoni... [more]
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BLAST of GT624260 vs. SwissProt
Analysis Date: 2010-12-28 (Homology Analysis: Lens culinaris unigene v1 vs Swissprot)
Total hits: 7
Match NameE-valueIdentityDescription
LSM5_PONAB1.415e-3079.75U6 snRNA-associated Sm-like protein LSm5 OS=Pongo ... [more]
LSM5_MOUSE1.415e-3079.75U6 snRNA-associated Sm-like protein LSm5 OS=Mus mu... [more]
LSM5_HUMAN1.415e-3079.75U6 snRNA-associated Sm-like protein LSm5 OS=Homo s... [more]
LSM5_BOVIN1.415e-3079.75U6 snRNA-associated Sm-like protein LSm5 OS=Bos ta... [more]
LSM5_DICDI3.054e-2568.83Probable U6 snRNA-associated Sm-like protein LSm5 ... [more]
LSM5_SCHPO9.516e-1956.41U6 snRNA-associated Sm-like protein LSm5 OS=Schizo... [more]
LSM5_YEAST1.331e-1245.88U6 snRNA-associated Sm-like protein LSm5 OS=Saccha... [more]
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BLAST of GT624260 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Lens culinaris unigene v1 vs TAIR 10 peptide)
Total hits: 1
Match NameE-valueIdentityDescription
AT5G48870.12.638e-4194.12| Symbols: SAD1 | Small nuclear ribonucleoprotein ... [more]
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InterPro
Analysis Name: InterProScan analysis for Lens culinaris unigene v1
Date Performed: 2011-01-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001163Like-Sm ribonucleoprotein (LSM) domainPFAMPF01423LSMcoord: 20..86
score: 5
IPR006649Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-typeSMARTSM00651no descriptioncoord: 18..86
score: 1.1
IPR010920Like-Sm ribonucleoprotein (LSM)-related domainSUPERFAMILY50182Sm-like ribonucleoproteinscoord: 14..93
score: 4.7
NoneNo IPR availableGENE3D2.30.30.100no descriptioncoord: 10..85
score: 1.6
NoneNo IPR availablePANTHERPTHR20971U6 SNRNA-ASSOCIATED PROTEINcoord: 4..92
score: 9

Properties
Property NameValue
Singlet in analysisLens culinaris unigene v1
Sequences
The following sequences are available for this feature:

EST sequence

>GT624260 ID=GT624260; Name=GT624260; organism=Lens culinaris; type=EST; length=642bp
GGAAAAATAAAACCCTAAAACAACAACAACTCAGCATCTCCATCAGCTTC
GACCCCTTCCGTCATAAACAAGCTGTAGTCGCTCCCTTAACTCTCCTCGC
CGGAAAATCAACTGGAGTTGGTCGTCGGAAGCCATAAAAGATTTTAGTGA
AACTACCAATTCATCTTCATGGCTAATAATCCATCACAGCTTCTTCCATC
AGAGTTGATTGACCGTTGTATAGGTTCAAAAATATGGGTGATAATGAAAG
GTGACAAGGAGCTTGTTGGTACTCTTAGAGGCTTTGATGTGTATGTCAAC
ATGGTCCTTGAAGATGTTACTGAATATGAGATCACTACTGAGGGGAGAAG
AATAACTAAGCTTGACCAGATTTTACTCAATGGAAACAACATTGCCATTT
TGGTCCCTGGTGGTTCACCTGATCCAGAATGAATAATGGGACCTGGGTTA
CCTCTATTTCTATAACTCTCTTAGTTGTTGCACAAGGTGCACAATTCCTA
TATTATAAAGATGATTCTGAGGCAAGCTAGGTTTTTTTCTTCCGTGAGCT
TGTTTAAGGATACATGATCGTAGTAACTATTAAACCTTAATCATTATGTT
GAATTGTGGATTTTCTAGTGTAACAATCTATGATATTGATTA
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Annotated Terms
The following terms have been associated with this EST:
Vocabulary: INTERPRO
TermDefinition
IPR001163Sm_dom_euk/arc
IPR006649Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type
IPR010920LSM_dom_sf