GH720477

EST Overview
NameGH720477
Unique NameGH720477
TypeEST
OrganismPisum sativum (pea)
Sequence length200
Unigenes
This EST is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Pisum sativum unigene v1Pisum sativum unigene v1EST
Libraries
Library NameType
LIBEST_024271 552NIcdna_library
Homology
BLAST of GH720477 vs. TrEMBL
Match: C6T4E7_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.297e-13
Identity = 35/39 (89.74%), Postives = 36/39 (92.31%), Query Frame = -1
Query:   69 RYLIGNDLKKLVERDVGRLVGIQCYRGIRHADGLPCRGQ 185
            +YLIGNDLKK VERDVGRLVGIQCYRGIRH D LPCRGQ
Sbjct:   91 KYLIGNDLKKCVERDVGRLVGIQCYRGIRHVDSLPCRGQ 129          
BLAST of GH720477 vs. TrEMBL
Match: B9GUF7_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_551504 PE=3 SV=1)

HSP 1 Score: 57.7658 bits (138), Expect = 4.196e-7
Identity = 25/39 (64.10%), Postives = 30/39 (76.92%), Query Frame = -1
Query:   69 RYLIGNDLKKLVERDVGRLVGIQCYRGIRHADGLPCRGQ 185
            +YL G DL + V+ DV RLV I+CYRG RH +GLPCRGQ
Sbjct:   91 KYLTGPDLARRVKADVQRLVDIECYRGYRHVEGLPCRGQ 129          
BLAST of GH720477 vs. TrEMBL
Match: A9PIG5_POPTR (Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1)

HSP 1 Score: 57.7658 bits (138), Expect = 4.196e-7
Identity = 25/39 (64.10%), Postives = 30/39 (76.92%), Query Frame = -1
Query:   69 RYLIGNDLKKLVERDVGRLVGIQCYRGIRHADGLPCRGQ 185
            +YL G DL + V+ DV RLV I+CYRG RH +GLPCRGQ
Sbjct:   91 KYLTGPDLARRVKADVQRLVDIECYRGYRHVEGLPCRGQ 129          
BLAST of GH720477 vs. SwissProt
Match: RT13_SOYBN (Small ribosomal subunit protein S13, mitochondrial OS=Glycine max GN=RSP13 PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.137e-14
Identity = 35/39 (89.74%), Postives = 36/39 (92.31%), Query Frame = -1
Query:   69 RYLIGNDLKKLVERDVGRLVGIQCYRGIRHADGLPCRGQ 185
            +YLIGNDLKK VERDVGRLVGIQCYRGIRH D LPCRGQ
Sbjct:   91 KYLIGNDLKKCVERDVGRLVGIQCYRGIRHVDSLPCRGQ 129          
BLAST of GH720477 vs. SwissProt
Match: RT13_MARPO (Ribosomal protein S13, mitochondrial OS=Marchantia polymorpha GN=RPS13 PE=3 SV=2)

HSP 1 Score: 53.5286 bits (127), Expect = 3.916e-7
Identity = 21/38 (55.26%), Postives = 30/38 (78.95%), Query Frame = -1
Query:   69 YLIGNDLKKLVERDVGRLVGIQCYRGIRHADGLPCRGQ 182
            YL+ ++LK++++RD+ RL+ I CYRG RH  GLP RGQ
Sbjct:   64 YLVDSELKRVIQRDIKRLISIGCYRGFRHNAGLPLRGQ 101          
BLAST of GH720477 vs. TAIR peptide
Match: AT5G14320.1 (| Symbols: | Ribosomal protein S13/S18 family | chr5:4617839-4618772 REVERSE LENGTH=169)

HSP 1 Score: 50.0618 bits (118), Expect = 3.345e-7
Identity = 21/39 (53.85%), Postives = 27/39 (69.23%), Query Frame = -1
Query:   69 RYLIGNDLKKLVERDVGRLVGIQCYRGIRHADGLPCRGQ 185
            +Y+I  DL++     + RL  IQCYRG+RH  GLPCRGQ
Sbjct:  107 KYMIEGDLRRFNALAIKRLKEIQCYRGVRHIQGLPCRGQ 145          
The following BLAST results are available for this feature:
BLAST of GH720477 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Pisum sativum unigene v1 vs Trembl)
Total hits: 3
Match NameE-valueIdentityDescription
C6T4E7_SOYBN2.297e-1389.74Putative uncharacterized protein OS=Glycine max PE... [more]
B9GUF7_POPTR4.196e-764.10Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]
A9PIG5_POPTR4.196e-764.10Putative uncharacterized protein OS=Populus tricho... [more]
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BLAST of GH720477 vs. SwissProt
Analysis Date: 2010-12-28 (Homology Analysis: Pisum sativum unigene v1 vs Swissprot)
Total hits: 2
Match NameE-valueIdentityDescription
RT13_SOYBN1.137e-1489.74Small ribosomal subunit protein S13, mitochondrial... [more]
RT13_MARPO3.916e-755.26Ribosomal protein S13, mitochondrial OS=Marchantia... [more]
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BLAST of GH720477 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Pisum sativum unigene v1 vs TAIR 10 peptide)
Total hits: 1
Match NameE-valueIdentityDescription
AT5G14320.13.345e-753.85| Symbols: | Ribosomal protein S13/S18 family | c... [more]
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InterPro
Analysis Name: InterProScan analysis for Pisum sativum unigene v1
Date Performed: 2010-12-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001892Ribosomal protein S13PIRPIRSF002134Ribosomal protein, S13p/S13a/S18e/organellar S13 typescoord: 2..63
score: 1.8
IPR001892Ribosomal protein S13PFAMPF00416Ribosomal_S13coord: 7..52
score: 9
IPR001892Ribosomal protein S13PROFILEPS50159RIBOSOMAL_S13_2coord: 3..55
score: 19
IPR010979Ribosomal protein S13-like, H2THSUPERFAMILY46946S13-like H2TH domaincoord: 7..62
score: 1.2
IPR018269Ribosomal protein S13, conserved sitePROSITEPS00646RIBOSOMAL_S13_1coord: 31..44
score
NoneNo IPR availableGENE3D4.10.910.10no descriptioncoord: 18..58
score: 8.5
NoneNo IPR availablePANTHERPTHR1087130S/40S RIBOSOMAL PROTEINcoord: 6..57
score: 2
NoneNo IPR availablePANTHERPTHR10871:SF130S RIBOSOMAL PROTEIN S13coord: 6..57
score: 2
NoneNo IPR availableSEGsegsegcoord: 45..62
score

Properties
Property NameValue
Singlet in analysisPisum sativum unigene v1
Sequences
The following sequences are available for this feature:

EST sequence

>GH720477 ID=GH720477; Name=GH720477; organism=Pisum sativum; type=EST; length=200bp
ACTATTTCTAGCGGCCGCCCGCGGCAGGTACGCATAGTCCTCCGAGTGCG
GGAATTTGTGTGAGTTCGCTGTCCCCGACAGGGTAAACCATCCGCATGCC
TGATCCCTCTGTAGCATTGAATACCAACCAACCTTCCCACATCTCTCTCA
ACTAACTTTTTCAAATCATTTCCAATCAAGTACCTCGGCCGCGACCACGC
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Annotated Terms
The following terms have been associated with this EST:
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO:0003735structural constituent of ribosome
GO:0003676nucleic acid binding
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular anatomical structure
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: INTERPRO
TermDefinition
IPR001892Ribosomal_S13
IPR010979Ribosomal_S13-like_H2TH
IPR018269Ribosomal_S13_CS