GH720684

EST Overview
NameGH720684
Unique NameGH720684
TypeEST
OrganismPisum sativum (pea)
Sequence length377
Unigenes
This EST is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Pisum sativum unigene v1Pisum sativum unigene v1EST
Libraries
Library NameType
LIBEST_024272 BACIcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
Pisum sativum unigene v12010-12-27
Homology Analysis: Pisum sativum unigene v1 vs Trembl2010-12-28
Homology Analysis: Pisum sativum unigene v1 vs TAIR 10 peptide2011-02-03
InterProScan analysis for Pisum sativum unigene v12010-12-29
Homology
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BLAST of GH720684 vs. TrEMBL
Match: B9RC94_RICCO (RNA-binding protein nob1, putative OS=Ricinus communis GN=RCOM_1686350 PE=4 SV=1)

HSP 1 Score: 65.0846 bits (157), Expect = 2.596e-9
Identity = 30/49 (61.22%), Postives = 39/49 (79.59%), Query Frame = 2 
Query:  212 QQVLEDARNRHGISVLIVDANAVIAGGDKLHGIADKFVSVPEVLEEIRD 358
            Q  +E  ++  GIS+ ++DANAVI GG+KLH +ADKFV+VPEVL EIRD
Sbjct:   39 QIFVESCKSSKGISMAVIDANAVIEGGEKLHNLADKFVTVPEVLAEIRD 87
[Close]
BLAST of GH720684 vs. TrEMBL
Match: B9GWG3_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_830830 PE=4 SV=1)

HSP 1 Score: 64.6994 bits (156), Expect = 3.390e-9
Identity = 29/51 (56.86%), Postives = 39/51 (76.47%), Query Frame = 2 
Query:  206 ETQQVLEDARNRHGISVLIVDANAVIAGGDKLHGIADKFVSVPEVLEEIRD 358
            + Q  +E  ++ HGISV ++DANA+I GG+KL+  ADKF +VPEVL EIRD
Sbjct:   35 QDQLYVESCKSTHGISVAVIDANAIIQGGEKLNNFADKFFTVPEVLAEIRD 85
[Close]
BLAST of GH720684 vs. TAIR peptide
Match: AT5G41190.1 (| Symbols: | CONTAINS InterPro DOMAIN/s: Nin one binding (NOB1) Zn-ribbon like (InterPro:IPR014881), D-site 20S pre-rRNA nuclease (InterPro:IPR017117); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:16487628-16490012 REVERSE LENGTH=602)

HSP 1 Score: 53.9138 bits (128), Expect = 2.754e-8
Identity = 25/47 (53.19%), Postives = 34/47 (72.34%), Query Frame = 2 
Query:  227 DARNRHGISVLIVDANAVIAGGDKLHGIADKFVSVPEVLEEIRDTSA 367
            + ++  GIS+ +VDANA+I G   L   ADKFV+VPEVL EIRD ++
Sbjct:   37 NCKSTKGISIAVVDANAIIEGRQSLTNFADKFVTVPEVLSEIRDPAS 83
The following BLAST results are available for this feature:
BLAST of GH720684 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Pisum sativum unigene v1 vs Trembl)
Total hits: 2
Match NameE-valueIdentityDescription
B9RC94_RICCO2.596e-961.22RNA-binding protein nob1, putative OS=Ricinus comm... [more]
B9GWG3_POPTR3.390e-956.86Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]
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BLAST of GH720684 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Pisum sativum unigene v1 vs TAIR 10 peptide)
Total hits: 1
Match NameE-valueIdentityDescription
AT5G41190.12.754e-853.19| Symbols: | CONTAINS InterPro DOMAIN/s: Nin one ... [more]
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InterPro
Analysis Name: InterProScan analysis for Pisum sativum unigene v1
Date Performed: 2010-12-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSEGsegsegcoord: 5..20
score: NAcoord: 27..34
score
NoneNo IPR availableSEGsegsegcoord: 15..37
score: NAcoord: 44..54
score

Properties
Property NameValue
Singlet in analysisPisum sativum unigene v1
Sequences
The following sequences are available for this feature:

EST sequence

>GH720684 ID=GH720684; Name=GH720684; organism=Pisum sativum; type=EST; length=377bp
TTCGAGCGGCCGCCCGGGCAGGTCCCACCTAGAACCCTAAACCTAACCAA
AACGGCGGCAGTGCTTCTCGCACCTCCGATCGAATCGTCGCCGGTAAATC
ATGGAGGAAGCTTCAGCAACAGCACCGCCACCACCAAAACCATCGTGTTG
GAGTAGCATAGTGAAGAAGGAGGCACCGCCACCTCAACAACCACCGCCAC
TTTTAGAGACTCAACAAGTTTTAGAAGATGCGCGTAACCGTCATGGGATA
TCTGTTTTGATTGTTGACGCTAATGCTGTTATTGCAGGCGGAGATAAGCT
TCATGGAATTGCTGATAAGTTTGTGTCTGTCCCGGAAGTCTTGGAGGAAA
TCCGTGATACCTCGGCCGCGACCACGC
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