GH719698

EST Overview
NameGH719698
Unique NameGH719698
TypeEST
OrganismPisum sativum (pea)
Sequence length462
Unigenes
This EST is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Pisum sativum unigene v1Pisum sativum unigene v1EST
Libraries
Library NameType
LIBEST_024268 TIcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
Pisum sativum unigene v12010-12-27
Homology Analysis: Pisum sativum unigene v1 vs Trembl2010-12-28
Homology Analysis: Pisum sativum unigene v1 vs TAIR 10 peptide2011-02-03
InterProScan analysis for Pisum sativum unigene v12010-12-29
Homology
BLAST of GH719698 vs. TrEMBL
Match: C6T3V2_SOYBN (Putative uncharacterized protein (Fragment) OS=Glycine max PE=2 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 4.546e-38
Identity = 78/108 (72.22%), Postives = 93/108 (86.11%), Query Frame = 2
Query:  140 MMRRDPVFARKKQSSVPSLVDLCVQKAIDNVRYLGNVGPVDHHLLEQILPHCTLDQLMHIEKASEG-DLSPVTDKLWKKFFEKQFGSNCVKEVIKRMAEKRVSFRWLQ 460
            MMRRD + AR+ ++  PSLVDLCVQK IDNVRYLGNVG +D HLLEQILPHCT DQLMH+EK+++G + SPVTDKLWKKF+EKQFG+N   EVIKRM +KRV+FRW+Q
Sbjct:    1 MMRRDQIRAREMRT--PSLVDLCVQKVIDNVRYLGNVGSLDQHLLEQILPHCTADQLMHVEKSTKGRNPSPVTDKLWKKFYEKQFGTNNTNEVIKRMKKKRVNFRWMQ 106          
BLAST of GH719698 vs. TrEMBL
Match: A9P8K1_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_569847 PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.199e-30
Identity = 65/98 (66.33%), Postives = 79/98 (80.61%), Query Frame = 2
Query:  170 KKQSSVPSLVDLCVQKAIDNVRYLGNVGPVDHHLLEQILPHCTLDQLMHIEKASEG-DLSPVTDKLWKKFFEKQFGSNCVKEVIKRMAEKRVSFRWLQ 460
            + +  VPSLVDLCV  A++NV+YLG+VG  D HLL++ILPHCTLDQLMHIEK++ G DLS VTDKLWK F+EKQFG      VI+RM +K+VSFRWLQ
Sbjct:    3 RTKRKVPSLVDLCVSLAVENVKYLGDVGETDLHLLDRILPHCTLDQLMHIEKSTVGRDLSSVTDKLWKTFYEKQFGERSTDLVIQRMRQKKVSFRWLQ 100          
BLAST of GH719698 vs. TrEMBL
Match: B9SIS5_RICCO (Protein pof4, putative OS=Ricinus communis GN=RCOM_0540710 PE=4 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 1.466e-28
Identity = 60/94 (63.83%), Postives = 73/94 (77.66%), Query Frame = 2
Query:  176 QSSVPSLVDLCVQKAIDNVRYLGNVGPVDHHLLEQILPHCTLDQLMHIEKASEG-DLSPVTDKLWKKFFEKQFGSNCVKEVIKRMAEKRVSFRW 454
            +   PSLVDLCV  AI +VRYLG+VG  D HLL+QILPHCT+DQLMH+EK+++G DLSP+TDKLWK F+EKQFG       I+RM   +VSFRW
Sbjct:   13 ERKAPSLVDLCVSVAISHVRYLGDVGETDLHLLDQILPHCTMDQLMHVEKSTQGRDLSPITDKLWKTFYEKQFGEREANVAIERMRRYKVSFRW 106          
BLAST of GH719698 vs. TrEMBL
Match: Q9SJH8_ARATH (At2g42780/F7D19.22 OS=Arabidopsis thaliana GN=At2g42780 PE=2 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 7.047e-23
Identity = 53/91 (58.24%), Postives = 71/91 (78.02%), Query Frame = 2
Query:  188 PSLVDLCVQKAIDNVRYLGNVGPVDHHLLEQILPHCTLDQLMHIEKASEG-DLSPVTDKLWKKFFEKQFGSNCVKEVIKRMAEKRVS-FRW 454
            PSLVDLCV+KAIDNV+Y+G VG VD  LLEQIL HCTL+QL HIE A++  DLSP+TDK WK F++K +G   +K++I+ +   +V+ F+W
Sbjct:   11 PSLVDLCVRKAIDNVKYIGYVGGVDFQLLEQILQHCTLEQLKHIEDATDDTDLSPITDKFWKGFYKKHYGEEDMKDLIEDLEWNKVNDFKW 101          
BLAST of GH719698 vs. TrEMBL
Match: B8LLG6_PICSI (Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.202e-22
Identity = 52/93 (55.91%), Postives = 69/93 (74.19%), Query Frame = 2
Query:  179 SSVPSLVDLCVQKAIDNVRYLGNVGPVDHHLLEQILPHCTLDQLMHIEKASEG-DLSPVTDKLWKKFFEKQFGSNCVKEVIKRMAEKRVSFRW 454
            +S PSLVDLC++ AIDN++Y+G+VG  D  LL+ IL HCT DQL+ IE ++EG DLSPVTD LW+ F+ ++FG      V KRM  K+VSF+W
Sbjct:    2 ASPPSLVDLCIRSAIDNIQYIGDVGETDFGLLKVILAHCTSDQLLFIENSTEGRDLSPVTDDLWQNFYARRFGEESADLVRKRMKLKKVSFKW 94          
BLAST of GH719698 vs. TrEMBL
Match: A9T7E4_PHYPA (Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_168483 PE=4 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.469e-20
Identity = 45/93 (48.39%), Postives = 72/93 (77.42%), Query Frame = 2
Query:  185 VPSLVDLCVQKAIDNVRYLGNVGPVDHHLLEQILPHCTLDQLMHIEKASEG-DLSPVTDKLWKKFFEKQFGSNCVKEVIKRMAEKRVSFRWLQ 460
            V SL++LCV+ AIDN++Y+ +VG  D  LL++ILPHC  +QL HIE +++G DLSP+TD LW+K + ++FG++ V+ V +RM++++  F+W Q
Sbjct:    2 VVSLLELCVRSAIDNLQYISDVGETDIQLLKRILPHCNAEQLNHIESSTKGRDLSPITDDLWRKCYGRKFGNDAVEMVKERMSDRKCKFKWRQ 94          
BLAST of GH719698 vs. TrEMBL
Match: A9T1Q5_PHYPA (Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_167589 PE=4 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.469e-20
Identity = 46/93 (49.46%), Postives = 70/93 (75.27%), Query Frame = 2
Query:  185 VPSLVDLCVQKAIDNVRYLGNVGPVDHHLLEQILPHCTLDQLMHIEKASEG-DLSPVTDKLWKKFFEKQFGSNCVKEVIKRMAEKRVSFRWLQ 460
            V SL++ CV+ AIDN++YL +VG  D  LL++ILPHC  DQL HIE +++G DLSP+TD+LW+K + ++FG + V+ V +RM+ ++  F+W Q
Sbjct:    2 VVSLLEFCVRSAIDNLQYLSDVGETDIQLLKRILPHCNADQLNHIETSTKGRDLSPITDELWRKCYGRRFGEDAVEMVKERMSSRKCKFKWRQ 94          
BLAST of GH719698 vs. TrEMBL
Match: C4J9F2_MAIZE (Putative uncharacterized protein OS=Zea mays PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 2.771e-19
Identity = 44/90 (48.89%), Postives = 68/90 (75.56%), Query Frame = 2
Query:  191 SLVDLCVQKAIDNVRYLGNVGPVDHHLLEQILPHCTLDQLMHIEKASEGDLSPVTDKLWKKFFEKQFGSNCVKEVIKRMAE--KRVSFRW 454
            SLV+LCV+KAIDN+RY+G+V  V+  LL++ILPHCT++QL  +E ++E DLS VTD LW++F++++FG     +VI R+ E  ++  + W
Sbjct:    9 SLVELCVRKAIDNLRYMGSVDGVEMDLLKRILPHCTMEQLTRVENSTEMDLSLVTDPLWRRFYQREFGQEHTSKVIARLKELGQKTPYTW 98          
BLAST of GH719698 vs. TrEMBL
Match: C0HGE4_MAIZE (Putative uncharacterized protein OS=Zea mays PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 2.771e-19
Identity = 44/90 (48.89%), Postives = 68/90 (75.56%), Query Frame = 2
Query:  191 SLVDLCVQKAIDNVRYLGNVGPVDHHLLEQILPHCTLDQLMHIEKASEGDLSPVTDKLWKKFFEKQFGSNCVKEVIKRMAE--KRVSFRW 454
            SLV+LCV+KAIDN+RY+G+V  V+  LL++ILPHCT++QL  +E ++E DLS VTD LW++F++++FG     +VI R+ E  ++  + W
Sbjct:    9 SLVELCVRKAIDNLRYMGSVDGVEMDLLKRILPHCTMEQLTRVENSTEMDLSLVTDPLWRRFYQREFGQEHTSKVIARLKELGQKTPYTW 98          
BLAST of GH719698 vs. TrEMBL
Match: Q0J7R4_ORYSJ (Os08g0169600 protein OS=Oryza sativa subsp. japonica GN=Os08g0169600 PE=4 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.053e-18
Identity = 41/88 (46.59%), Postives = 62/88 (70.45%), Query Frame = 2
Query:  191 SLVDLCVQKAIDNVRYLGNVGPVDHHLLEQILPHCTLDQLMHIEKASEGDLSPVTDKLWKKFFEKQFGSNCVKEVIKRMAEKRVSFRW 454
            SL++LC++  +DN+RY+ NV  V+  LL++ILPHC ++ L  IE  +E DL+PVTDKLWK F+ +QFG     +V+KRM+     ++W
Sbjct:   10 SLLELCIRTTMDNLRYVDNVDGVEMDLLQRILPHCKMEDLTRIENNTEMDLTPVTDKLWKLFYTRQFGEENANQVVKRMSMSGARYKW 97          
BLAST of GH719698 vs. TAIR peptide
Match: AT2G42780.2 (| Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcription; LOCATED IN: integral to membrane, nucleus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase II transcription factor SIII, subunit A (InterPro:IPR010684). | chr2:17801037-17802646 FORWARD LENGTH=253)

HSP 1 Score: 110.153 bits (274), Expect = 5.273e-25
Identity = 53/91 (58.24%), Postives = 71/91 (78.02%), Query Frame = 2
Query:  188 PSLVDLCVQKAIDNVRYLGNVGPVDHHLLEQILPHCTLDQLMHIEKASEG-DLSPVTDKLWKKFFEKQFGSNCVKEVIKRMAEKRVS-FRW 454
            PSLVDLCV+KAIDNV+Y+G VG VD  LLEQIL HCTL+QL HIE A++  DLSP+TDK WK F++K +G   +K++I+ +   +V+ F+W
Sbjct:   11 PSLVDLCVRKAIDNVKYIGYVGGVDFQLLEQILQHCTLEQLKHIEDATDDTDLSPITDKFWKGFYKKHYGEEDMKDLIEDLEWNKVNDFKW 101          
BLAST of GH719698 vs. TAIR peptide
Match: AT2G42780.1 (| Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcription; LOCATED IN: integral to membrane, nucleus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase II transcription factor SIII, subunit A (InterPro:IPR010684); Has 187 Blast hits to 186 proteins in 77 species: Archae - 0; Bacteria - 0; Metazoa - 104; Fungi - 29; Plants - 38; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink). | chr2:17801037-17802646 FORWARD LENGTH=293)

HSP 1 Score: 110.153 bits (274), Expect = 5.273e-25
Identity = 53/91 (58.24%), Postives = 71/91 (78.02%), Query Frame = 2
Query:  188 PSLVDLCVQKAIDNVRYLGNVGPVDHHLLEQILPHCTLDQLMHIEKASEG-DLSPVTDKLWKKFFEKQFGSNCVKEVIKRMAEKRVS-FRW 454
            PSLVDLCV+KAIDNV+Y+G VG VD  LLEQIL HCTL+QL HIE A++  DLSP+TDK WK F++K +G   +K++I+ +   +V+ F+W
Sbjct:   11 PSLVDLCVRKAIDNVKYIGYVGGVDFQLLEQILQHCTLEQLKHIEDATDDTDLSPITDKFWKGFYKKHYGEEDMKDLIEDLEWNKVNDFKW 101          
The following BLAST results are available for this feature:
BLAST of GH719698 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Pisum sativum unigene v1 vs Trembl)
Total hits: 10
Match NameE-valueIdentityDescription
C6T3V2_SOYBN4.546e-3872.22Putative uncharacterized protein (Fragment) OS=Gly... [more]
A9P8K1_POPTR1.199e-3066.33Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]
B9SIS5_RICCO1.466e-2863.83Protein pof4, putative OS=Ricinus communis GN=RCOM... [more]
Q9SJH8_ARATH7.047e-2358.24At2g42780/F7D19.22 OS=Arabidopsis thaliana GN=At2g... [more]
B8LLG6_PICSI1.202e-2255.91Putative uncharacterized protein OS=Picea sitchens... [more]
A9T7E4_PHYPA1.469e-2048.39Predicted protein OS=Physcomitrella patens subsp. ... [more]
A9T1Q5_PHYPA1.469e-2049.46Predicted protein OS=Physcomitrella patens subsp. ... [more]
C4J9F2_MAIZE2.771e-1948.89Putative uncharacterized protein OS=Zea mays PE=2 ... [more]
C0HGE4_MAIZE2.771e-1948.89Putative uncharacterized protein OS=Zea mays PE=2 ... [more]
Q0J7R4_ORYSJ1.053e-1846.59Os08g0169600 protein OS=Oryza sativa subsp. japoni... [more]
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BLAST of GH719698 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Pisum sativum unigene v1 vs TAIR 10 peptide)
Total hits: 2
Match NameE-valueIdentityDescription
AT2G42780.25.273e-2558.24| Symbols: | FUNCTIONS IN: molecular_function unk... [more]
AT2G42780.15.273e-2558.24| Symbols: | FUNCTIONS IN: molecular_function unk... [more]
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InterPro
Analysis Name: InterProScan analysis for Pisum sativum unigene v1
Date Performed: 2010-12-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR010684RNA polymerase II transcription factor SIII, subunit APFAMPF06881Elongin_Acoord: 40..101
score: 2.1
NoneNo IPR availablePANTHERPTHR15141TRANSCRIPTION ELONGATION FACTOR B POLYPEPTIDE 3coord: 18..91
score: 3.7
NoneNo IPR availableSEGsegsegcoord: 42..55
score

Properties
Property NameValue
Singlet in analysisPisum sativum unigene v1
Sequences
The following sequences are available for this feature:

EST sequence

>GH719698 ID=GH719698; Name=GH719698; organism=Pisum sativum; type=EST; length=462bp
CGCGTGATCTCACGCGCGAAGTCGTTCTCCTCTTGCAACCTTAGAAACAC
ACAGTCTCTATATCTATCTCCTCTCCGATTCACCACCGTCGCCGTCCCTT
GGTTTCCGATCCAATTTCCTTTGACGGAATCCTGTGAATATGATGAGACG
GGATCCAGTGTTTGCGAGGAAGAAGCAATCATCGGTTCCATCATTGGTTG
ATCTTTGTGTTCAGAAAGCTATAGATAATGTAAGATACCTTGGAAATGTT
GGTCCTGTTGATCATCATCTGCTTGAGCAAATTTTGCCGCATTGCACGCT
TGACCAGTTGATGCATATCGAGAAGGCCAGCGAAGGGGATTTGAGCCCTG
TAACTGATAAGTTGTGGAAAAAGTTCTTCGAGAAGCAGTTTGGTTCAAAT
TGCGTGAAAGAAGTTATTAAGAGGATGGCAGAAAAAAGAGTGTCATTCAG
ATGGTTGCAGTT
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Annotated Terms
The following terms have been associated with this EST:
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO:0016021integral component of membrane
Vocabulary: Biological Process
TermDefinition
GO:0045449regulation of transcription
Vocabulary: INTERPRO
TermDefinition
IPR010684RNA_pol_II_trans_fac_SIII_A