Lens_culinaris_v1_Contig326

Contig Overview


Name	Lens_culinaris_v1_Contig326
Unique Name	Lens_culinaris_v1_Contig326
Type	contig
Organism	Lens culinaris (lentil)
Sequence length	793

Unigenes

This contig is part of the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
Lens culinaris unigene v1	Lens culinaris unigene v1	contig

Relationships

The following EST feature(s) are a part of this contig:


Feature Name	Unique Name	Species	Type
GT623372	GT623372	Lens culinaris	EST
GT624819	GT624819	Lens culinaris	EST

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Lens culinaris unigene v1	2010-12-27
Homology Analysis: Lens culinaris unigene v1 vs Trembl	2010-12-28
Homology Analysis: Lens culinaris unigene v1 vs TAIR 10 peptide	2011-02-03
InterProScan analysis for Lens culinaris unigene v1	2011-01-06

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
GT623372	EST	GT623372:1..793 -
GT624819	EST	GT624819:68..791 +

Homology

[Close]

BLAST of Lens_culinaris_v1_Contig326 vs. TrEMBL
Match: C6T3P1_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 7.011e-37
Identity = 87/160 (54.37%), Postives = 97/160 (60.62%), Query Frame = 2

Query:  149 MRFGGALRNILRXXXXXXXXXXXXXX--------FHAPFPSYCKPPQFLLPFLNHFHSLTDTRFXXXXXXXXXXXXXATLRPSGPYAWVEHTTGETILPNKPNEGSVXXXXXXXXXXXXXAFILEEKKKRKAQMQEAKRRKNIKKVERKMAAVEREREWA 604
            M F GALRNI+R                      F   FPS CK PQ+L P  NHFHSLTDTRF             A+LRPSGPYAWV++T G+ ILPNKPNEGSV             AFIL EKKKRKAQ+QEA R+KNI++VERKMAAV REREWA
Sbjct:    1 MGFAGALRNIVRPLSVASSRALTPRISTNASMAPFCPAFPSPCKTPQWLHPLWNHFHSLTDTRFPKRRPSEKPRRKRASLRPSGPYAWVQYTPGQPILPNKPNEGSVKRRNEKKRMRQRRAFILAEKKKRKAQLQEANRKKNIQRVERKMAAVAREREWA 160

[Close]

BLAST of Lens_culinaris_v1_Contig326 vs. TrEMBL
Match: C6T3T3_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 1.322e-35
Identity = 86/160 (53.75%), Postives = 95/160 (59.38%), Query Frame = 2

Query:  149 MRFGGALRNILRXXXXXXXXXXXXXX--------FHAPFPSYCKPPQFLLPFLNHFHSLTDTRFXXXXXXXXXXXXXATLRPSGPYAWVEHTTGETILPNKPNEGSVXXXXXXXXXXXXXAFILEEKKKRKAQMQEAKRRKNIKKVERKMAAVEREREWA 604
            M F GALRNI+R                      F   FPS CKPPQ+L P  N FHSLTDTRF             A LRPSGPYAWV++T  + ILPNKPNEGSV             AFIL EKKKRKAQ+QEA R+KNI++VERKMAAV REREWA
Sbjct:    1 MGFAGALRNIVRPLSVASSRALMPRISINASMAPFCPAFPSPCKPPQWLHPLWNQFHSLTDTRFPKRRPSEKPRRKRACLRPSGPYAWVQYTPCQPILPNKPNEGSVKRRNEKKRMRQRRAFILAEKKKRKAQLQEANRKKNIQRVERKMAAVAREREWA 160

[Close]

BLAST of Lens_culinaris_v1_Contig326 vs. TrEMBL
Match: C6SVP3_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 1.462e-34
Identity = 75/121 (61.98%), Postives = 85/121 (70.25%), Query Frame = 2

Query:  242 PSYCKPPQFLLPFLNHFHSLTDTRFXXXXXXXXXXXXXATLRPSGPYAWVEHTTGETILPNKPNEGSVXXXXXXXXXXXXXAFILEEKKKRKAQMQEAKRRKNIKKVERKMAAVEREREWA 604
            PS CKPPQ LLP  +HFHSLTDTRF             A+LRPSGPYAWV++T G  ILPNKPNEGSV             AFIL E+KKRKAQ+QEA R+KNI++VERKMAAV RER+WA
Sbjct:   40 PSPCKPPQRLLPLWSHFHSLTDTRFPKRRPSERPRRKRASLRPSGPYAWVQYTPGRPILPNKPNEGSVKRRNEKKRMRQRRAFILAERKKRKAQLQEANRKKNIQRVERKMAAVARERDWA 160

[Close]

BLAST of Lens_culinaris_v1_Contig326 vs. TrEMBL
Match: A5AL27_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_007909 PE=4 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 1.565e-28
Identity = 66/111 (59.46%), Postives = 73/111 (65.77%), Query Frame = 2

Query:  272 LPFLNHFHSLTDTRFXXXXXXXXXXXXXATLRPSGPYAWVEHTTGETILPNKPNEGSVXXXXXXXXXXXXXAFILEEKKKRKAQMQEAKRRKNIKKVERKMAAVEREREWA 604
            +P  NHFHSLTDTRF             A+LRP GPYAWV++  GE ILPN+PNEGSV             AFIL E KKRK Q+QEAKR+KNIK VERKMAAV RER WA
Sbjct:   54 VPVANHFHSLTDTRFPKRRPSDKPRRKRASLRPPGPYAWVQYVPGERILPNRPNEGSVKGRKEKKRMRLRRAFILSEAKKRKTQLQEAKRKKNIKGVERKMAAVARERAWA 164

[Close]

BLAST of Lens_culinaris_v1_Contig326 vs. TrEMBL
Match: D7LTM0_ARALY (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_485453 PE=4 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 3.735e-22
Identity = 70/166 (42.17%), Postives = 85/166 (51.20%), Query Frame = 2

Query:  161 GALRNILRXXXXXXXXXXXXXXFHAPFPSY---CKPP--QFL-----------LPFLNHFHSL--TDTRFXXXXXXXXXXXXXATLRPSGPYAWVEHTTGETILPNKPNEGSVXXXXXXXXXXXXXAFILEEKKKRKAQMQEAKRRKNIKKVERKMAAVEREREWA 604
            GA+R+I R                APFP+     KP    F            +P  NHFHSL  TDTR              + L+P GPYA+V++T G+ I  N PNEGSV             AFIL EKKKR+A +QEAKR+K IK+VERKMAAV R+R WA
Sbjct:    4 GAIRSIFRPLSRTLVSRAVANYSSAPFPAKIPAAKPELCSFFGGSMTHLRLPWIPMANHFHSLSLTDTRLPKRRPMTHPKRKRSKLKPPGPYAYVQYTPGQPISSNNPNEGSVKRRNAKKRIAQRRAFILSEKKKRQALVQEAKRKKRIKQVERKMAAVARDRAWA 169

[Close]

BLAST of Lens_culinaris_v1_Contig326 vs. TrEMBL
Match: Q9SD44_ARATH (At3g51010 OS=Arabidopsis thaliana GN=At3g51010 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 4.878e-22
Identity = 58/113 (51.33%), Postives = 70/113 (61.95%), Query Frame = 2

Query:  272 LPFLNHFHSL--TDTRFXXXXXXXXXXXXXATLRPSGPYAWVEHTTGETILPNKPNEGSVXXXXXXXXXXXXXAFILEEKKKRKAQMQEAKRRKNIKKVERKMAAVEREREWA 604
            +P  NHFHSL  TDTR              + L+P GPYA+V++T G+ I  N PNEGSV             AFIL EKKKR+A +QEAKR+K IK+VERKMAAV R+R WA
Sbjct:   57 IPMANHFHSLSLTDTRLPKRRPMTHPKRKRSKLKPPGPYAYVQYTPGQPISSNNPNEGSVKRRNAKKRIGQRRAFILSEKKKRQALVQEAKRKKRIKQVERKMAAVARDRAWA 169

[Close]

BLAST of Lens_culinaris_v1_Contig326 vs. TrEMBL
Match: Q8LEP2_ARATH (Putative uncharacterized protein OS=Arabidopsis thaliana PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 4.878e-22
Identity = 58/113 (51.33%), Postives = 70/113 (61.95%), Query Frame = 2

Query:  272 LPFLNHFHSL--TDTRFXXXXXXXXXXXXXATLRPSGPYAWVEHTTGETILPNKPNEGSVXXXXXXXXXXXXXAFILEEKKKRKAQMQEAKRRKNIKKVERKMAAVEREREWA 604
            +P  NHFHSL  TDTR              + L+P GPYA+V++T G+ I  N PNEGSV             AFIL EKKKR+A +QEAKR+K IK+VERKMAAV R+R WA
Sbjct:   57 IPMANHFHSLSLTDTRLPKRRPMTHPKRKRSKLKPPGPYAYVQYTPGQPISSNNPNEGSVKRRNAKKRIGQRRAFILSEKKKRQALVQEAKRKKRIKQVERKMAAVARDRAWA 169

[Close]

BLAST of Lens_culinaris_v1_Contig326 vs. TrEMBL
Match: B9HFB2_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_820063 PE=4 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.087e-21
Identity = 59/125 (47.20%), Postives = 71/125 (56.80%), Query Frame = 2

Query:  230 HAPFPSYCKPPQFLLPFLNHFHSLTDTRFXXXXXXXXXXXXXATLRPSGPYAWVEHTTGETILPNKPNEGSVXXXXXXXXXXXXXAFILEEKKKRKAQMQEAKRRKNIKKVERKMAAVEREREWA 604
            H+P+    +   FL    N F  LT TRF             A+L+P GPYAWV++  G+ I PN PN GSV              FIL EKKKRKAQ+QEA R+K I +VERKMAAV R+REWA
Sbjct:   45 HSPWTQMIRHFSFLSE-ANPFDRLTSTRFPKRRPVDKPRRKRASLKPPGPYAWVQYVPGQPIKPNNPNVGSVKRRNEKKRIRQRKEFILAEKKKRKAQLQEANRKKRIARVERKMAAVARDREWA 168

[Close]

BLAST of Lens_culinaris_v1_Contig326 vs. TrEMBL
Match: B9S684_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0533190 PE=4 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 7.043e-21
Identity = 56/107 (52.34%), Postives = 65/107 (60.75%), Query Frame = 2

Query:  284 NHFHSLTDTRFXXXXXXXXXXXXXATLRPSGPYAWVEHTTGETILPNKPNEGSVXXXXXXXXXXXXXAFILEEKKKRKAQMQEAKRRKNIKKVERKMAAVEREREWA 604
            N F SLTD RF             A+L+P GPYAWV+H  GE I  + PN+GSV             AFI  E KKRKAQ+QEAK+RK IK+VERKMAAV R+R WA
Sbjct:   59 NRFDSLTDGRFPKRRPVDKPRRKRASLKPPGPYAWVKHVPGEPIQISNPNKGSVKRRNEKKGIKLHRAFIKAEAKKRKAQLQEAKKRKIIKRVERKMAAVARDRAWA 165

[Close]

BLAST of Lens_culinaris_v1_Contig326 vs. TrEMBL
Match: Q75IM4_ORYSJ (Os05g0126200 protein OS=Oryza sativa subsp. japonica GN=P0683F12.6 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 6.170e-17
Identity = 50/104 (48.08%), Postives = 57/104 (54.81%), Query Frame = 2

Query:  290 FHSLTDTRFXXXXXXXXXXXXXATLRPSGPYAWVEHTTGETILPNKPNEGSVXXXXXXXXXXXXXAFILEEKKKRKAQMQEAKRRKNIKKVERKMAAVEREREW 601
            F  L DTRF             A+LRP GPY WV+   GE I  N+PNEGSV             AFI+ EKKKRKAQ   A +RK  ++ ERKMAAV RER W
Sbjct:   70 FSGLMDTRFPKRRPGFKSRRKRASLRPKGPYYWVKCKPGEPIPANQPNEGSVQGRKEKKRIKQRKAFIMAEKKKRKAQYSAAVKRKEAERTERKMAAVARERAW 173

[Close]

BLAST of Lens_culinaris_v1_Contig326 vs. TAIR peptide
Match: AT3G51010.1 (| Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, plastid; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 24 Blast hits to 24 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:18946880-18948048 REVERSE LENGTH=188)

HSP 1 Score: 108.997 bits (271), Expect = 3.136e-24
Identity = 58/113 (51.33%), Postives = 70/113 (61.95%), Query Frame = 2

Query:  272 LPFLNHFHSL--TDTRFXXXXXXXXXXXXXATLRPSGPYAWVEHTTGETILPNKPNEGSVXXXXXXXXXXXXXAFILEEKKKRKAQMQEAKRRKNIKKVERKMAAVEREREWA 604
            +P  NHFHSL  TDTR              + L+P GPYA+V++T G+ I  N PNEGSV             AFIL EKKKR+A +QEAKR+K IK+VERKMAAV R+R WA
Sbjct:   57 IPMANHFHSLSLTDTRLPKRRPMTHPKRKRSKLKPPGPYAYVQYTPGQPISSNNPNEGSVKRRNAKKRIGQRRAFILSEKKKRQALVQEAKRKKRIKQVERKMAAVARDRAWA 169

The following BLAST results are available for this feature:

BLAST of Lens_culinaris_v1_Contig326 vs. TrEMBL
BLAST of Lens_culinaris_v1_Contig326 vs. TAIR peptide

BLAST of Lens_culinaris_v1_Contig326 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Lens culinaris unigene v1 vs Trembl)
Total hits: 10


Match Name	E-value	Identity	Description
C6T3P1_SOYBN	7.011e-37	54.38	Putative uncharacterized protein OS=Glycine max PE...	[more]
C6T3T3_SOYBN	1.322e-35	53.75	Putative uncharacterized protein OS=Glycine max PE...	[more]
C6SVP3_SOYBN	1.462e-34	61.98	Putative uncharacterized protein OS=Glycine max PE...	[more]
A5AL27_VITVI	1.565e-28	59.46	Putative uncharacterized protein OS=Vitis vinifera...	[more]
D7LTM0_ARALY	3.735e-22	42.17	Putative uncharacterized protein OS=Arabidopsis ly...	[more]
Q9SD44_ARATH	4.878e-22	51.33	At3g51010 OS=Arabidopsis thaliana GN=At3g51010 PE=...	[more]
Q8LEP2_ARATH	4.878e-22	51.33	Putative uncharacterized protein OS=Arabidopsis th...	[more]
B9HFB2_POPTR	1.087e-21	47.20	Predicted protein OS=Populus trichocarpa GN=POPTRD...	[more]
B9S684_RICCO	7.043e-21	52.34	Putative uncharacterized protein OS=Ricinus commun...	[more]
Q75IM4_ORYSJ	6.170e-17	48.08	Os05g0126200 protein OS=Oryza sativa subsp. japoni...	[more]

BLAST of Lens_culinaris_v1_Contig326 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Lens culinaris unigene v1 vs TAIR 10 peptide)
Total hits: 1


Match Name	E-value	Identity	Description
AT3G51010.1	3.136e-24	51.33	\| Symbols: \| unknown protein; FUNCTIONS IN: molec...	[more]

InterPro

Analysis Name: InterProScan analysis for Lens culinaris unigene v1
Date Performed: 2011-01-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	SEG	seg	seg	coord: 30..43 score: NAcoord: 74..86 score: NAcoord: 117..129 score: NAcoord: 170..184 score
None	No IPR available	SEG	seg	seg	coord: 41..57 score

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>Lens_culinaris_v1_Contig326 ID=Lens_culinaris_v1_Contig326; Name=Lens_culinaris_v1_Contig326; organism=Lens culinaris; type=contig; length=793bp
CGACCAGACATCTTCGCGAGATAATTTAGGGATCTAGGGTTTTTTCAAAA
TGCAGTGTCTTCTTCCAGTTTGGGTGAAAACAAGTTGGAGCAGCTGAAAC
CCTCCCTCTACTGCCCGGAGTTGGCCGTCAACCGCCACCAGGAGAGAAAT
GAGATTCGGAGGAGCTCTCAGAAACATTTTACGTCCTCTCTCACTCTCTT
CGTCAACGCCTCTAACTACATTGCCATTTCATGCACCTTTTCCATCTTAT
TGCAAACCACCACAATTCCTTCTTCCCTTTTTGAACCACTTTCACAGCTT
GACAGACACTCGTTTTCCCAAGAGACGACCATCTGATAAGCCTCGTCCAA
AGCGGGCTACCTTGAGACCCTCTGGGCCTTATGCTTGGGTTGAACACACA
ACTGGCGAAACCATACTTCCTAATAAGCCTAACGAAGGGAGTGTCAAGAG
GAGGAATGAGAAGAAACGCATGAGGCAGCGCCGTGCCTTCATACTAGAGG
AAAAGAAGAAAAGGAAAGCTCAGATGCAAGAGGCTAAGCGGAGGAAAAAC
ATTAAGAAGGTAGAGCGTAAAATGGCTGCTGTTGAAAGGGAAAGAGAGTG
GGCCGTAAGACTGGTCGAATTGAAACGCCTTGAGGAAGAGAAGAAAAAGT
CTATGGCTTAAATTTGTTTAGGACCTCATCTGCAATTGGTAATACTGGTC
AAGTTTTTGGGCCTCTTAATAATTTGAACCCGCTACAATACTGTATCTTC
AATTTGTTTATGTTGATTAATGATTGAATGACTGCTTATTTTA

Search form

Lens_culinaris_v1_Contig326