Lens_culinaris_v1_Contig491

Contig Overview
NameLens_culinaris_v1_Contig491
Unique NameLens_culinaris_v1_Contig491
Typecontig
OrganismLens culinaris (lentil)
Sequence length504
Unigenes
This contig is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Lens culinaris unigene v1Lens culinaris unigene v1contig
Relationships

The following EST feature(s) are a part of this contig:

Feature NameUnique NameSpeciesType
GT626769GT626769Lens culinarisEST
GT622706GT622706Lens culinarisEST
GT626418GT626418Lens culinarisEST


Analyses
This contig is derived from or has results from the following analyses
Analysis NameDate Performed
Lens culinaris unigene v12010-12-27
Homology Analysis: Lens culinaris unigene v1 vs Trembl2010-12-28
Homology Analysis: Lens culinaris unigene v1 vs TAIR 10 peptide2011-02-03
InterProScan analysis for Lens culinaris unigene v12011-01-06
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
GT626769ESTGT626769:1..504 +
GT622706ESTGT622706:28..482 +
GT626418ESTGT626418:392..504 +
Homology
[Close]
BLAST of Lens_culinaris_v1_Contig491 vs. TrEMBL
Match: D7T5A5_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_189.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00003386001 PE=4 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.566e-12
Identity = 36/43 (83.72%), Postives = 38/43 (88.37%), Query Frame = 2 
Query:   80 RGNQREKDRERAQARANSKSKQGKSDGLTPEQRRERDAKALQE 208
            RGNQR++DRERAQAR   KSKQ K DGLTPEQRRERDAKALQE
Sbjct:   34 RGNQRDRDRERAQARIGHKSKQAKDDGLTPEQRRERDAKALQE 76
[Close]
BLAST of Lens_culinaris_v1_Contig491 vs. TrEMBL
Match: B9S514_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1719540 PE=4 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 5.717e-12
Identity = 36/43 (83.72%), Postives = 37/43 (86.05%), Query Frame = 2 
Query:   80 RGNQREKDRERAQARANSKSKQGKSDGLTPEQRRERDAKALQE 208
            RGNQRE+DRERAQARA  K K  K DGLTPEQRRERDAKALQE
Sbjct:   12 RGNQRERDRERAQARAGQKPKNPKDDGLTPEQRRERDAKALQE 54
[Close]
BLAST of Lens_culinaris_v1_Contig491 vs. TrEMBL
Match: B9GFX0_POPTR (Predicted protein (Fragment) OS=Populus trichocarpa GN=POPTRDRAFT_641924 PE=4 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 9.752e-12
Identity = 36/44 (81.82%), Postives = 38/44 (86.36%), Query Frame = 2 
Query:   77 SRGNQREKDRERAQARANSKSKQGKSDGLTPEQRRERDAKALQE 208
            SRGNQREKDRERAQAR  +K  +GK DGLT EQRRERDAKALQE
Sbjct:    2 SRGNQREKDRERAQARGGNKVNKGKDDGLTHEQRRERDAKALQE 45
[Close]
BLAST of Lens_culinaris_v1_Contig491 vs. TrEMBL
Match: D7SNS7_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_29.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00021052001 PE=4 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.837e-11
Identity = 34/45 (75.56%), Postives = 39/45 (86.67%), Query Frame = 2 
Query:   74 MSRGNQREKDRERAQARANSKSKQGKSDGLTPEQRRERDAKALQE 208
            +SRGNQR++DRERA +R  SK  +GK DGLTPEQRRERDAKALQE
Sbjct:   30 ISRGNQRDRDRERAASRNPSKGSKGKDDGLTPEQRRERDAKALQE 74
[Close]
BLAST of Lens_culinaris_v1_Contig491 vs. TrEMBL
Match: A9PAB8_POPTR (Putative uncharacterized protein OS=Populus trichocarpa PE=4 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.837e-11
Identity = 37/45 (82.22%), Postives = 38/45 (84.44%), Query Frame = 2 
Query:   74 MSRGNQREKDRERAQARANSKSKQGKSDGLTPEQRRERDAKALQE 208
            M+RGNQREKDRERAQAR   K K  K DGLTPEQRRERDAKALQE
Sbjct:    1 MARGNQREKDRERAQARNGGKGKN-KDDGLTPEQRRERDAKALQE 44
[Close]
BLAST of Lens_culinaris_v1_Contig491 vs. TrEMBL
Match: C6SZT0_SOYBN (Putative uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 6.321e-11
Identity = 35/45 (77.78%), Postives = 40/45 (88.89%), Query Frame = 2 
Query:   74 MSRGNQREKDRERAQARANSKSKQGKSDGLTPEQRRERDAKALQE 208
            M+RG+QR++DRERAQAR  +K KQ K DGLTPEQRRERDAKALQE
Sbjct:    1 MTRGSQRDRDRERAQARTGAKGKQ-KDDGLTPEQRRERDAKALQE 44
[Close]
BLAST of Lens_culinaris_v1_Contig491 vs. TrEMBL
Match: A9RF26_PHYPA (Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_65287 PE=4 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.402e-10
Identity = 35/45 (77.78%), Postives = 39/45 (86.67%), Query Frame = 2 
Query:   74 MSRGNQREKDRERAQARANSKSKQGKSDGLTPEQRRERDAKALQE 208
            M+RGNQREKDRERA ARA  K+ + + DGLTPEQRRERDAKALQE
Sbjct:   46 MTRGNQREKDRERAAARA--KTTKARDDGLTPEQRRERDAKALQE 88
[Close]
BLAST of Lens_culinaris_v1_Contig491 vs. TrEMBL
Match: Q8GXU7_ARATH (At4g13612 OS=Arabidopsis thaliana GN=At4g13615 PE=4 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.351e-10
Identity = 34/45 (75.56%), Postives = 37/45 (82.22%), Query Frame = 2 
Query:   74 MSRGNQREKDRERAQARANSKSKQGKSDGLTPEQRRERDAKALQE 208
            M+RG+QRE+DRERA ARA  K K G  DGLTPEQRRERD KALQE
Sbjct:    1 MTRGSQRERDRERAAARAGGKGKNG-DDGLTPEQRRERDGKALQE 44
[Close]
BLAST of Lens_culinaris_v1_Contig491 vs. TrEMBL
Match: Q94K36_ARATH (Putative uncharacterized protein AT3g24100 OS=Arabidopsis thaliana GN=At3g24100 PE=4 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.128e-10
Identity = 34/45 (75.56%), Postives = 37/45 (82.22%), Query Frame = 2 
Query:   74 MSRGNQREKDRERAQARANSKSKQGKSDGLTPEQRRERDAKALQE 208
            M+RG+QRE+DRERA AR   K K  K DGLTPEQRRERDAKALQE
Sbjct:    1 MTRGSQRERDRERALARTGGKGKN-KDDGLTPEQRRERDAKALQE 44
[Close]
BLAST of Lens_culinaris_v1_Contig491 vs. TrEMBL
Match: D7MHE1_ARALY (Expressed protein (Fragment) OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_493552 PE=4 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 2.033e-9
Identity = 33/45 (73.33%), Postives = 37/45 (82.22%), Query Frame = 2 
Query:   74 MSRGNQREKDRERAQARANSKSKQGKSDGLTPEQRRERDAKALQE 208
            M+RG+QRE+DRERA ARA  K K  + DGLTPEQRRERD KALQE
Sbjct:    1 MTRGSQRERDRERAAARAGGKGKNAE-DGLTPEQRRERDGKALQE 44
[Close]
BLAST of Lens_culinaris_v1_Contig491 vs. TAIR peptide
Match: AT4G13615.1 (| Symbols: | Uncharacterised protein family SERF | chr4:7924353-7925017 FORWARD LENGTH=71)

HSP 1 Score: 67.3958 bits (163), Expect = 4.740e-12
Identity = 34/45 (75.56%), Postives = 37/45 (82.22%), Query Frame = 2 
Query:   74 MSRGNQREKDRERAQARANSKSKQGKSDGLTPEQRRERDAKALQE 208
            M+RG+QRE+DRERA ARA  K K G  DGLTPEQRRERD KALQE
Sbjct:    1 MTRGSQRERDRERAAARAGGKGKNG-DDGLTPEQRRERDGKALQE 44
[Close]
BLAST of Lens_culinaris_v1_Contig491 vs. TAIR peptide
Match: AT3G24100.1 (| Symbols: | Uncharacterised protein family SERF | chr3:8703373-8704045 FORWARD LENGTH=69)

HSP 1 Score: 66.6254 bits (161), Expect = 8.085e-12
Identity = 34/45 (75.56%), Postives = 37/45 (82.22%), Query Frame = 2 
Query:   74 MSRGNQREKDRERAQARANSKSKQGKSDGLTPEQRRERDAKALQE 208
            M+RG+QRE+DRERA AR   K K  K DGLTPEQRRERDAKALQE
Sbjct:    1 MTRGSQRERDRERALARTGGKGKN-KDDGLTPEQRRERDAKALQE 44
The following BLAST results are available for this feature:
BLAST of Lens_culinaris_v1_Contig491 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Lens culinaris unigene v1 vs Trembl)
Total hits: 10
Match NameE-valueIdentityDescription
D7T5A5_VITVI2.566e-1283.72Whole genome shotgun sequence of line PN40024, sca... [more]
B9S514_RICCO5.717e-1283.72Putative uncharacterized protein OS=Ricinus commun... [more]
B9GFX0_POPTR9.752e-1281.82Predicted protein (Fragment) OS=Populus trichocarp... [more]
D7SNS7_VITVI2.837e-1175.56Whole genome shotgun sequence of line PN40024, sca... [more]
A9PAB8_POPTR2.837e-1182.22Putative uncharacterized protein OS=Populus tricho... [more]
C6SZT0_SOYBN6.321e-1177.78Putative uncharacterized protein OS=Glycine max PE... [more]
A9RF26_PHYPA2.402e-1077.78Predicted protein OS=Physcomitrella patens subsp. ... [more]
Q8GXU7_ARATH5.351e-1075.56At4g13612 OS=Arabidopsis thaliana GN=At4g13615 PE=... [more]
Q94K36_ARATH9.128e-1075.56Putative uncharacterized protein AT3g24100 OS=Arab... [more]
D7MHE1_ARALY2.033e-973.33Expressed protein (Fragment) OS=Arabidopsis lyrata... [more]
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BLAST of Lens_culinaris_v1_Contig491 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Lens culinaris unigene v1 vs TAIR 10 peptide)
Total hits: 2
Match NameE-valueIdentityDescription
AT4G13615.14.740e-1275.56| Symbols: | Uncharacterised protein family SERF ... [more]
AT3G24100.18.085e-1275.56| Symbols: | Uncharacterised protein family SERF ... [more]
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InterPro
Analysis Name: InterProScan analysis for Lens culinaris unigene v1
Date Performed: 2011-01-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007513Uncharacterised protein family SERFPFAMPF044194F5coord: 25..81
score: 1.3
NoneNo IPR availableSEGsegsegcoord: 70..90
score
NoneNo IPR availableSEGsegsegcoord: 4..14
score: NAcoord: 47..54
score

Sequences
The following sequences are available for this feature:

contig sequence

>Lens_culinaris_v1_Contig491 ID=Lens_culinaris_v1_Contig491; Name=Lens_culinaris_v1_Contig491; organism=Lens culinaris; type=contig; length=504bp
TCACATCGTTTTCTTTCATCTCAGGGCCTTTAATTTACGCTCTCGTTCGT
CAAGATCGTTCGATCAATCCATAATGTCTCGCGGAAATCAAAGAGAAAAG
GATCGTGAAAGGGCTCAAGCTAGAGCCAATAGCAAATCCAAGCAAGGAAA
GAGTGATGGATTGACGCCAGAACAACGAAGAGAAAGGGATGCGAAAGCGT
TACAAGAGAAAGCGGCGAGGAAAGCTGGACAGCGGGCGGGAGGAAGTAAT
ATGGGGGGTGGTGGCGGTGGAGACAAAAATTAGTAAATTATAATTATAAT
GATAATTAAATTAATTGAGGGTGTGTTATTATTGTAGGAATTAGGGAAGG
GAAGAAGGGTTATTTCGATGATATGGGTTTATGGTTTTTAAGTCATTGTG
ATAGGGTATGGTTATTGTTGTTGGCTTTTCAACCTTTTACTTTTATGTGA
TTTGAAATGCAATCTCTATGTATTTATATGCAGAAATCAGTTACGTTCAG
ACAT
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR007513SERF-like_N