Pisum_sativum_v1_Contig1588

Contig Overview
NamePisum_sativum_v1_Contig1588
Unique NamePisum_sativum_v1_Contig1588
Typecontig
OrganismPisum sativum (pea)
Sequence length564
Unigenes
This contig is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Pisum sativum unigene v1Pisum sativum unigene v1contig
Relationships

The following EST feature(s) are a part of this contig:

Feature NameUnique NameSpeciesType
FG536720FG536720Pisum sativumEST
FG537368FG537368Pisum sativumEST
FG529869FG529869Pisum sativumEST
FG531651FG531651Pisum sativumEST


Analyses
This contig is derived from or has results from the following analyses
Analysis NameDate Performed
Pisum sativum unigene v12010-12-27
Homology Analysis: Pisum sativum unigene v1 vs Trembl2010-12-28
Homology Analysis: Pisum sativum unigene v1 vs TAIR 10 peptide2011-02-03
InterProScan analysis for Pisum sativum unigene v12010-12-29
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
FG536720ESTFG536720:1..399 +
FG537368ESTFG537368:22..499 +
FG529869ESTFG529869:44..564 +
FG531651ESTFG531651:44..555 +
Homology
[Close]
BLAST of Pisum_sativum_v1_Contig1588 vs. TrEMBL
Match: B6ZJZ9_SOYBN (Peroxisomal adenine nucleotide carrier 1 OS=Glycine max PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 3.682e-25
Identity = 63/88 (71.59%), Postives = 69/88 (78.41%), Query Frame = 3 
Query:    3 VIIQAA*ADDXXXXXXXXXXXXXXXXLCGIWKREGILGYFKGLHAQILKTVLSSALLLMIKEKISATTWVLILAIKRYLLLPKGRVKN 266
            VIIQAA + +                L GIWKREGILGYFKGLHAQILKTVLSSALLLMIKEKISA+TWVLILA+KRYLLLP+G+VKN
Sbjct:  230 VIIQAADSAEETSKTKIKSQKTVLSVLYGIWKREGILGYFKGLHAQILKTVLSSALLLMIKEKISASTWVLILALKRYLLLPRGKVKN 317
[Close]
BLAST of Pisum_sativum_v1_Contig1588 vs. TrEMBL
Match: B9RF53_RICCO (Peroxisomal membrane protein pmp34, putative OS=Ricinus communis GN=RCOM_1431420 PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.310e-22
Identity = 56/88 (63.64%), Postives = 67/88 (76.14%), Query Frame = 3 
Query:    3 VIIQAA*ADDXXXXXXXXXXXXXXXXLCGIWKREGILGYFKGLHAQILKTVLSSALLLMIKEKISATTWVLILAIKRYLLLPKGRVKN 266
            V+IQAA +DD                +C IWKREG+LG+FKGL AQILKTVLSSALLLMIKEKIS +TWVLILAI+RYLL+P+ R+K+
Sbjct:  230 VMIQAADSDDESKKGKSKSRKTVPGVVCAIWKREGVLGFFKGLQAQILKTVLSSALLLMIKEKISRSTWVLILAIRRYLLVPRSRLKS 317
[Close]
BLAST of Pisum_sativum_v1_Contig1588 vs. TrEMBL
Match: B9MZU8_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_827376 PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 4.977e-22
Identity = 57/89 (64.04%), Postives = 66/89 (74.16%), Query Frame = 3 
Query:    3 VIIQAA*ADDXXXXXXXXXXXXXXXX-LCGIWKREGILGYFKGLHAQILKTVLSSALLLMIKEKISATTWVLILAIKRYLLLPKGRVKN 266
            V+I+AA  DD                 +C IWKREGI G+FKGLHAQILKTVLSSALLLMIKEKI+ATTWVLILAI+RYL L +GR+K+
Sbjct:  228 VVIEAADTDDDETKKSQRKSKKTISAVICAIWKREGIFGFFKGLHAQILKTVLSSALLLMIKEKIAATTWVLILAIRRYLFLTRGRLKS 316
[Close]
BLAST of Pisum_sativum_v1_Contig1588 vs. TrEMBL
Match: B9I7W4_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_823623 PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.038e-19
Identity = 53/88 (60.23%), Postives = 65/88 (73.86%), Query Frame = 3 
Query:    3 VIIQAA*ADDXXXXXXXXXXXXXXXXLC-GIWKREGILGYFKGLHAQILKTVLSSALLLMIKEKISATTWVLILAIKRYLLLPKGRVK 263
            V+IQAA +DD                +   IWK+EGILG+FKG+HAQILKTVLSSA LLMIKEKI+AT+WVLILAI+RYL L +G++K
Sbjct:  228 VVIQAADSDDDEAKKAQRKSRKTLSAVIRAIWKKEGILGFFKGMHAQILKTVLSSAFLLMIKEKIAATSWVLILAIRRYLFLTRGKLK 315
[Close]
BLAST of Pisum_sativum_v1_Contig1588 vs. TrEMBL
Match: A6YTC9_CUCME (Mitochondrial FAD carrier OS=Cucumis melo PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.498e-18
Identity = 53/88 (60.23%), Postives = 65/88 (73.86%), Query Frame = 3 
Query:    3 VIIQAA*ADDXXXXXXXXXXXXXXXXLCGIWKREGILGYFKGLHAQILKTVLSSALLLMIKEKISATTWVLILAIKRYLLLPKGRVKN 266
            V+IQAA  DD                +  IW++EGILG+FKGL AQILKTVLSSALLLMIKEKI++TTWVLILAI+RYLLL + ++K+
Sbjct:  230 VMIQAA-HDDETKENRQKVQRTVPGVVHSIWRKEGILGFFKGLQAQILKTVLSSALLLMIKEKITSTTWVLILAIRRYLLLTRPKLKS 316
[Close]
BLAST of Pisum_sativum_v1_Contig1588 vs. TrEMBL
Match: D7T6T6_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_20.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00017914001 PE=4 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.360e-18
Identity = 48/87 (55.17%), Postives = 63/87 (72.41%), Query Frame = 3 
Query:    3 VIIQAA*ADDXXXXXXXXXXXXXXXXLCGIWKREGILGYFKGLHAQILKTVLSSALLLMIKEKISATTWVLILAIKRYLLLPKGRVK 263
            V++QAA +D+                +  IWKREG+LG+FKGL AQILKTVLSSALLLMIKEKI+ TTWV++LA++RYL + + R+K
Sbjct:  231 VMLQAAESDEDGTTKEAQPRKTVSDTIYSIWKREGLLGFFKGLEAQILKTVLSSALLLMIKEKITKTTWVILLALRRYLTVNRTRLK 317
[Close]
BLAST of Pisum_sativum_v1_Contig1588 vs. TrEMBL
Match: A5BLA4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_015341 PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.164e-17
Identity = 53/89 (59.55%), Postives = 62/89 (69.66%), Query Frame = 3 
Query:    3 VIIQAA*-ADDXXXXXXXXXXXXXXXXLCGIWKREGILGYFKGLHAQILKTVLSSALLLMIKEKISATTWVLILAIKRYLLLPKGRVKN 266
            V+IQAA  +DD                L  IWKREG+ G+FKGL AQILKTVLSSALLLMIKEKI+A TWVLILA ++YLLL   R+K+
Sbjct:  230 VMIQAADTSDDEAKKAPQKSHKTVHGVLYAIWKREGVPGFFKGLQAQILKTVLSSALLLMIKEKIAAGTWVLILAARKYLLLTGSRLKS 318
[Close]
BLAST of Pisum_sativum_v1_Contig1588 vs. TrEMBL
Match: D7M637_ARALY (Mitochondrial substrate carrier family protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_489576 PE=4 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 4.820e-17
Identity = 47/59 (79.66%), Postives = 54/59 (91.53%), Query Frame = 3 
Query:   90 IWKREGILGYFKGLHAQILKTVLSSALLLMIKEKISATTWVLILAIKRYLLLPKGRVKN 266
            IWK+EGILG+FKGL AQILKTVLSSALLLMIKEKI+ATTW+LILAI R L + KGR+K+
Sbjct:  263 IWKKEGILGFFKGLQAQILKTVLSSALLLMIKEKITATTWILILAI-RTLFVTKGRLKS 320
[Close]
BLAST of Pisum_sativum_v1_Contig1588 vs. TrEMBL
Match: D7L3S5_ARALY (Mitochondrial substrate carrier family protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_477817 PE=4 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.832e-16
Identity = 45/61 (73.77%), Postives = 55/61 (90.16%), Query Frame = 3 
Query:   90 IWKREGILGYFKGLHAQILKTVLSSALLLMIKEKISATTWVLILAIKRYLLL--PKGRVKN 266
            IW++EG+LG+FKGL AQILKTVLSSALLLMIKEKI+ATTW+LILAI+R L L   KG++K+
Sbjct:  261 IWRKEGMLGFFKGLQAQILKTVLSSALLLMIKEKITATTWILILAIRRTLFLTNTKGKLKS 321
[Close]
BLAST of Pisum_sativum_v1_Contig1588 vs. TrEMBL
Match: Q8VZS0_ARATH (Putative uncharacterized protein At5g27520 OS=Arabidopsis thaliana GN=At5g27520 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.392e-16
Identity = 46/59 (77.97%), Postives = 53/59 (89.83%), Query Frame = 3 
Query:   90 IWKREGILGYFKGLHAQILKTVLSSALLLMIKEKISATTWVLILAIKRYLLLPKGRVKN 266
            IWK+EGILG+FKGL AQILKTVLSSALLLMIKEKI+ATTW+LILAI R L + K R+K+
Sbjct:  263 IWKKEGILGFFKGLQAQILKTVLSSALLLMIKEKITATTWILILAI-RTLFVTKARLKS 320
[Close]
BLAST of Pisum_sativum_v1_Contig1588 vs. TAIR peptide
Match: AT5G27520.1 (| Symbols: PNC2 | peroxisomal adenine nucleotide carrier 2 | chr5:9714664-9716244 REVERSE LENGTH=321)

HSP 1 Score: 88.9669 bits (219), Expect = 1.906e-18
Identity = 46/59 (77.97%), Postives = 53/59 (89.83%), Query Frame = 3 
Query:   90 IWKREGILGYFKGLHAQILKTVLSSALLLMIKEKISATTWVLILAIKRYLLLPKGRVKN 266
            IWK+EGILG+FKGL AQILKTVLSSALLLMIKEKI+ATTW+LILAI R L + K R+K+
Sbjct:  263 IWKKEGILGFFKGLQAQILKTVLSSALLLMIKEKITATTWILILAI-RTLFVTKARLKS 320
[Close]
BLAST of Pisum_sativum_v1_Contig1588 vs. TAIR peptide
Match: AT3G05290.1 (| Symbols: PNC1 | peroxisomal adenine nucleotide carrier 1 | chr3:1506129-1507614 REVERSE LENGTH=322)

HSP 1 Score: 88.1965 bits (217), Expect = 3.251e-18
Identity = 44/61 (72.13%), Postives = 55/61 (90.16%), Query Frame = 3 
Query:   90 IWKREGILGYFKGLHAQILKTVLSSALLLMIKEKISATTWVLILAIKRYLLL--PKGRVKN 266
            IW++EG+LG+FKGL AQILKTVLSSALLLMIKEKI+ATTW+LILAI+R L L   KG++++
Sbjct:  261 IWRKEGMLGFFKGLQAQILKTVLSSALLLMIKEKITATTWILILAIRRTLFLTNTKGKLRS 321
The following BLAST results are available for this feature:
BLAST of Pisum_sativum_v1_Contig1588 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Pisum sativum unigene v1 vs Trembl)
Total hits: 10
Match NameE-valueIdentityDescription
B6ZJZ9_SOYBN3.682e-2571.59Peroxisomal adenine nucleotide carrier 1 OS=Glycin... [more]
B9RF53_RICCO1.310e-2263.64Peroxisomal membrane protein pmp34, putative OS=Ri... [more]
B9MZU8_POPTR4.977e-2264.04Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]
B9I7W4_POPTR1.038e-1960.23Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]
A6YTC9_CUCME1.498e-1860.23Mitochondrial FAD carrier OS=Cucumis melo PE=3 SV=... [more]
D7T6T6_VITVI4.360e-1855.17Whole genome shotgun sequence of line PN40024, sca... [more]
A5BLA4_VITVI2.164e-1759.55Putative uncharacterized protein OS=Vitis vinifera... [more]
D7M637_ARALY4.820e-1779.66Mitochondrial substrate carrier family protein OS=... [more]
D7L3S5_ARALY1.832e-1673.77Mitochondrial substrate carrier family protein OS=... [more]
Q8VZS0_ARATH2.392e-1677.97Putative uncharacterized protein At5g27520 OS=Arab... [more]
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BLAST of Pisum_sativum_v1_Contig1588 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Pisum sativum unigene v1 vs TAIR 10 peptide)
Total hits: 2
Match NameE-valueIdentityDescription
AT5G27520.11.906e-1877.97| Symbols: PNC2 | peroxisomal adenine nucleotide c... [more]
AT3G05290.13.251e-1872.13| Symbols: PNC1 | peroxisomal adenine nucleotide c... [more]
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InterPro
Analysis Name: InterProScan analysis for Pisum sativum unigene v1
Date Performed: 2010-12-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001993Mitochondrial substrate carrierPANTHERPTHR11896MITOCHONDRIAL CARRIER PROTEIN RELATEDcoord: 14..61
score: 6.3
IPR001993Mitochondrial substrate carrierSUPERFAMILY103506Mitochondrial carriercoord: 14..57
score: 7
IPR018108Mitochondrial substrate/solute carrierPFAMPF00153Mito_carrcoord: 7..58
score: 2.5
NoneNo IPR availableGENE3D1.50.40.10no descriptioncoord: 8..57
score: 3.7
NoneNo IPR availablePANTHERPTHR11896:SF36PEROXISOMAL MEMBRANE PROTEIN PMP34coord: 14..61
score: 6.3
NoneNo IPR availableSEGsegsegcoord: 4..19
score
NoneNo IPR availableSEGsegsegcoord: 25..30
score

Sequences
The following sequences are available for this feature:

contig sequence

>Pisum_sativum_v1_Contig1588 ID=Pisum_sativum_v1_Contig1588; Name=Pisum_sativum_v1_Contig1588; organism=Pisum sativum; type=contig; length=564bp
ACGTCATCATTCAAGCTGCATAAGCAGATGACGAAACTTCCGAAAAAAAG
ATTAAATCATCGAAAACTGTGTCCAGCGTTCTCTGCGGAATATGGAAAAG
GGAGGGCATTTTGGGCTATTTCAAAGGATTACATGCTCAGATATTGAAAA
CTGTTTTGAGCTCGGCACTGCTCTTGATGATCAAGGAAAAGATCTCTGCC
ACTACCTGGGTCCTTATTCTTGCAATTAAAAGGTATCTCTTACTCCCAAA
GGGCAGGGTTAAGAACTTGTAAGTTTTACTATAGTTGTTATTGGAGGAAG
AAGGTTCTACGCATTTTCGATAATGGATTTGGTTAGAATGCAACGTGTGC
ATTTTACGGATACGTCCATTTCTTTAGAGCTGAGACAAGGTTCTTTTTCT
GGCTTCTCTTTAGTCCAATATCCTTCACTAGTCGATGTAGAACAATGTGT
CCAAGAATTCATGCAAACGATAGACCATAGCTAGATTGAAAGTCTTTTAA
CAATAAATGCATTTGAGTTTTGATTTGTTACATTTCAGACACGAAGGAAC
GAATGTCGTTACTT
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
Vocabulary: Biological Process
TermDefinition
GO:0006810transport
GO:0055085transmembrane transport
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR001993Mitochondrial substrate carrier
IPR018108Mitochondrial_sb/sol_carrier