Pisum_sativum_v1_Contig2059

Contig Overview
NamePisum_sativum_v1_Contig2059
Unique NamePisum_sativum_v1_Contig2059
Typecontig
OrganismPisum sativum (pea)
Sequence length575
Unigenes
This contig is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Pisum sativum unigene v1Pisum sativum unigene v1contig
Relationships

The following EST feature(s) are a part of this contig:

Feature NameUnique NameSpeciesType
GH720743GH720743Pisum sativumEST
FG536004FG536004Pisum sativumEST


Analyses
This contig is derived from or has results from the following analyses
Analysis NameDate Performed
Pisum sativum unigene v12010-12-27
Homology Analysis: Pisum sativum unigene v1 vs Trembl2010-12-28
Homology Analysis: Pisum sativum unigene v1 vs TAIR 10 peptide2011-02-03
InterProScan analysis for Pisum sativum unigene v12010-12-29
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
GH720743ESTGH720743:1..575 +
FG536004ESTFG536004:244..575 +
Homology
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BLAST of Pisum_sativum_v1_Contig2059 vs. TrEMBL
Match: C6TFE9_SOYBN (Putative uncharacterized protein (Fragment) OS=Glycine max PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.499e-16
Identity = 42/58 (72.41%), Postives = 51/58 (87.93%), Query Frame = 2 
Query:   23 PDPNMVPKQIRIVDFKTGCEVYAGSAFAMSPSPNALPIPSFQRKFAPVAFDDSATRDL 196
            PDP+MVPKQIRIVDF++G E+YAGSAFA+SPSP+ALP+PSF ++   VA  DSATRDL
Sbjct:  115 PDPDMVPKQIRIVDFRSGREIYAGSAFAVSPSPSALPLPSFSKRQPAVAVADSATRDL 172
[Close]
BLAST of Pisum_sativum_v1_Contig2059 vs. TrEMBL
Match: B9HYA3_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_657943 PE=4 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.074e-14
Identity = 42/68 (61.76%), Postives = 55/68 (80.88%), Query Frame = 2 
Query:   23 PDPNMVPKQIRIVDFKTG----CEVYAGSAFAMSPSPNALPIPSFQRKFAPVAFDDSATRDLRRLLRI 214
            PDP +V KQIRIVD ++     C++YAGSAFA+SP+P++LP+PSF +K   V+ DDSATRDLRRLLR+
Sbjct:  138 PDPKVVSKQIRIVDLRSPVNGKCDMYAGSAFAVSPAPSSLPLPSFSKK-KQVSIDDSATRDLRRLLRL 204
[Close]
BLAST of Pisum_sativum_v1_Contig2059 vs. TrEMBL
Match: B9HM93_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_565281 PE=4 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.700e-13
Identity = 39/68 (57.35%), Postives = 52/68 (76.47%), Query Frame = 2 
Query:   23 PDPNMVPKQIRIVDFKT----GCEVYAGSAFAMSPSPNALPIPSFQRKFAPVAFDDSATRDLRRLLRI 214
            PDP  V KQIRIVD ++     C++YAGSAF++SP P++LP+P F +K   ++ DDSATRDLRRLLR+
Sbjct:  147 PDPKTVSKQIRIVDLRSPVAGNCDMYAGSAFSVSPPPSSLPLPLFSKK-KHLSVDDSATRDLRRLLRL 213
[Close]
BLAST of Pisum_sativum_v1_Contig2059 vs. TrEMBL
Match: B9T0S5_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0318920 PE=4 SV=1)

HSP 1 Score: 58.9214 bits (141), Expect = 2.834e-7
Identity = 30/65 (46.15%), Postives = 44/65 (67.69%), Query Frame = 2 
Query:   23 PDPNMVPKQIRIVDFKTG----CEVYAGSAFAMSPSPNALPIPSFQRKFAPVAFDDSATRDLRRL 205
            PDP  VP+QI+I+D +      C++YA  + A+S +P++LP+PSF +K   V  DDS TRDL +L
Sbjct:   37 PDPQKVPRQIQILDLRPQVTRKCDMYARFSLAVSSAPSSLPLPSFSKK-KQVLVDDSTTRDLNQL 100
[Close]
BLAST of Pisum_sativum_v1_Contig2059 vs. TAIR peptide
Match: AT3G21570.1 (| Symbols: | unknown protein; Has 43 Blast hits to 43 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 43; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:7600297-7600707 REVERSE LENGTH=136)

HSP 1 Score: 54.6842 bits (130), Expect = 4.098e-8
Identity = 28/51 (54.90%), Postives = 41/51 (80.39%), Query Frame = 2 
Query:   80 EVYAGSA-FAMSPSPNALPIPSFQRKFAP-----VAFDDSATRDLRRLLRI 214
            ++YAGS+ FA+SP+P++LP+PSF +K A      V+ DDSA++DLRRLLR+
Sbjct:   84 DIYAGSSIFAVSPAPSSLPLPSFSKKKAKSQVVVVSIDDSASQDLRRLLRL 134
The following BLAST results are available for this feature:
BLAST of Pisum_sativum_v1_Contig2059 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Pisum sativum unigene v1 vs Trembl)
Total hits: 4
Match NameE-valueIdentityDescription
C6TFE9_SOYBN1.499e-1672.41Putative uncharacterized protein (Fragment) OS=Gly... [more]
B9HYA3_POPTR1.074e-1461.76Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]
B9HM93_POPTR7.700e-1357.35Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]
B9T0S5_RICCO2.834e-746.15Putative uncharacterized protein OS=Ricinus commun... [more]
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BLAST of Pisum_sativum_v1_Contig2059 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Pisum sativum unigene v1 vs TAIR 10 peptide)
Total hits: 1
Match NameE-valueIdentityDescription
AT3G21570.14.098e-854.90| Symbols: | unknown protein; Has 43 Blast hits t... [more]
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InterPro
Analysis Name: InterProScan analysis for Pisum sativum unigene v1
Date Performed: 2010-12-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSEGsegsegcoord: 3..17
score: NAcoord: 65..90
score
NoneNo IPR availableSEGsegsegcoord: 43..54
score
NoneNo IPR availableSEGsegsegcoord: 27..54
score

Sequences
The following sequences are available for this feature:

contig sequence

>Pisum_sativum_v1_Contig2059 ID=Pisum_sativum_v1_Contig2059; Name=Pisum_sativum_v1_Contig2059; organism=Pisum sativum; type=contig; length=575bp
TAGCGTGGTCGCGGCCGAGGTACCCGACCCGAATATGGTTCCTAAACAGA
TCCGGATCGTTGATTTCAAGACAGGTTGCGAAGTTTACGCCGGATCCGCG
TTCGCGATGTCTCCGTCACCCAACGCACTTCCGATTCCGTCTTTTCAGAG
GAAGTTTGCGCCGGTGGCCTTCGACGACTCCGCAACACGGGATCTGAGAC
GTCTTCTTCGTATTGCATGAGTCTGAAACGAGTCATTTCCGGGTTACAGG
TCATATCCATATCCACGTCAACTTTTCATCTTCTCTTCCTTTTTGTCTCT
CTCTCTCTCCCTCTCTCTCTCTTTCTCTCCTTAATCTAGAATCTTCTTAT
TACCCGTTACGTCCCTATCCCATTTTTTCAAATTCTAACTCAACCGTGAT
TTTTTTAAACGGAAGGGTTGAATTAAAAAATGGGGTAAAACTCGGGGCGG
AAATGTTAATTAAAAAAGTCTGGAGTAGTGTGGTTGAGAGGTTTTTCTGT
AAGATCTTGTTAATTAATGGGTTGTTAAGGGTAAAATTTAGGTTGTAATA
TGAAATTAGAATTGGGAAAAAAATG
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