Pisum_sativum_v1_Contig2255

Contig Overview
NamePisum_sativum_v1_Contig2255
Unique NamePisum_sativum_v1_Contig2255
Typecontig
OrganismPisum sativum (pea)
Sequence length544
Unigenes
This contig is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Pisum sativum unigene v1Pisum sativum unigene v1contig
Relationships

The following EST feature(s) are a part of this contig:

Feature NameUnique NameSpeciesType
FG531889FG531889Pisum sativumEST
FG531789FG531789Pisum sativumEST
EX570988EX570988Pisum sativumEST
EX570987EX570987Pisum sativumEST


Analyses
This contig is derived from or has results from the following analyses
Analysis NameDate Performed
Pisum sativum unigene v12010-12-27
Homology Analysis: Pisum sativum unigene v1 vs Trembl2010-12-28
InterProScan analysis for Pisum sativum unigene v12010-12-29
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
FG531889ESTFG531889:154..477 +
FG531789ESTFG531789:5..438 +
EX570988ESTEX570988:3..527 +
EX570987ESTEX570987:1..544 +
Homology
BLAST of Pisum_sativum_v1_Contig2255 vs. TrEMBL
Match: B7FH52_MEDTR (Putative uncharacterized protein OS=Medicago truncatula PE=2 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 3.852e-37
Identity = 80/117 (68.38%), Postives = 91/117 (77.78%), Query Frame = 2
Query:   11 DFEVSDGIDTSNDD-IENLLAETFDLGIXXXXXXXXXXXXKLVMSDESQAQECPITDDPVEERKPLHGVNKDASALLKILSPNERGPKSPVGSAKHFEKPPQYVNLKCAPQRIHQPR 358
            DF  S G D +NDD IE++L+ETFDLGI            KLVMSDE  AQECP+ D+PVEE+KP+HGVNKDA+AL+KILSP ERG KSP+GS K FEKP QYVNLKCAPQRIHQPR
Sbjct:   55 DFVESGGNDATNDDDIEHMLSETFDLGIEEDFNFLDNEFEKLVMSDE--AQECPVMDEPVEEKKPVHGVNKDAAALIKILSPKERGSKSPIGSPKQFEKPAQYVNLKCAPQRIHQPR 169          
BLAST of Pisum_sativum_v1_Contig2255 vs. TrEMBL
Match: C6SYK1_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 4.731e-19
Identity = 55/111 (49.55%), Postives = 69/111 (62.16%), Query Frame = 2
Query:   35 DTSNDDIENLLAETFDLGIXXXXXXXXXXXXKLVMSDESQAQECPITDDPVEERKPLHGVNKDASALLKIL---SPNERGPKSPVGSAKHFEKPPQYVNLKCAPQRIHQPR 358
            D++NDD+EN+L+ETFDLG+            +LVM   S+A +  + DDP   +     +NKD  A L  L   SP ERGPKSP G AKH EKP Q+VN+KCA  RIHQPR
Sbjct:   62 DSTNDDMENMLSETFDLGMEEDFNVLENEFEQLVMF--SEALDHSVQDDPNIGKGSPQSLNKDVKAFLINLTPKSPRERGPKSPSGLAKHLEKPAQHVNVKCASLRIHQPR 170          
BLAST of Pisum_sativum_v1_Contig2255 vs. TrEMBL
Match: C6SYC3_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.054e-18
Identity = 58/119 (48.74%), Postives = 71/119 (59.66%), Query Frame = 2
Query:   11 DFEVSDGIDTSNDDIENLLAETFDLGIXXXXXXXXXXXXKLVMSDESQAQECPITDDPVEERKPLHGVNKDASALLKIL---SPNERGPKSPVGSAKHFEKPPQYVNLKCAPQRIHQPR 358
            +FEV++  D+SNDDIEN+L+ETFDLG+            +LVMS E+         DP   +    G+NKD  A+L  L   SP ERGPKS  G AKH EKP Q+VN KC   RIHQPR
Sbjct:   55 EFEVAN--DSSNDDIENMLSETFDLGMEEDFNVLENEFEQLVMSSEALDHS-----DPNAGKVSPQGLNKDVKAILINLTPKSPRERGPKSLSGLAKHLEKPAQHVNAKCVSLRIHQPR 166          
BLAST of Pisum_sativum_v1_Contig2255 vs. TrEMBL
Match: D7SQ18_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_143.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00000857001 PE=4 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 8.641e-13
Identity = 47/120 (39.17%), Postives = 67/120 (55.83%), Query Frame = 2
Query:   11 DFEVSDGIDTSNDDIENLLAETFDLGIXXXXXXXXXXXXKLVMSDESQAQECPITDDPVEERKPLHGVNKDASALLKIL----SPNERGPKSPVGSAKHFEKPPQYVNLKCAPQRIHQPR 358
            +FEV+DG D   DD+ NLL ETFDLGI            +L+   E++      +      RKP++G+  +  AL+K L    SP  + PK+PVG AK+ EK  Q ++ K  P+RI+QPR
Sbjct:   56 NFEVNDGAD---DDVLNLLPETFDLGIDEESLDLEVQMEELIQLSETKEGTESASTVSKTGRKPVNGLKLETEALMKNLNLGNSPKGKSPKTPVGPAKYHEKAAQCMSPKYGPRRINQPR 172          
BLAST of Pisum_sativum_v1_Contig2255 vs. TrEMBL
Match: B9GWK2_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_817609 PE=4 SV=1)

HSP 1 Score: 63.929 bits (154), Expect = 7.570e-9
Identity = 43/119 (36.13%), Postives = 59/119 (49.58%), Query Frame = 2
Query:   14 FEVSDGIDTSNDDIENLLAETFDLGIXXXXXXXXXXXXKLVMSDESQAQECPITDDPVEERKPLHGVNKDASALLKIL----SPNERGPKSPVGSAKHFEKPPQYVNLKCAPQRIHQPR 358
            F+ S G D  +DD+ +LL E  D+G+            ++V   E++ +      DP  ERKP +G+  D   LLK +    SP ER P+SP   AK+  KPP  V  K     IHQPR
Sbjct:   56 FDGSAGAD--DDDLTDLLPEDLDVGVEEEFPNLEAQFEEMVKLAEAEEKTDSSAADPKVERKPPNGLIMDVKTLLKDMNIPKSPKERSPRSPRTLAKYQMKPPHCVVAKRTALYIHQPR 172          
BLAST of Pisum_sativum_v1_Contig2255 vs. TrEMBL
Match: A9PJP9_9ROSI (Putative uncharacterized protein OS=Populus trichocarpa x Populus deltoides PE=2 SV=1)

HSP 1 Score: 63.1586 bits (152), Expect = 1.291e-8
Identity = 43/119 (36.13%), Postives = 59/119 (49.58%), Query Frame = 2
Query:   14 FEVSDGIDTSNDDIENLLAETFDLGIXXXXXXXXXXXXKLVMSDESQAQECPITDDPVEERKPLHGVNKDASALLKIL----SPNERGPKSPVGSAKHFEKPPQYVNLKCAPQRIHQPR 358
            F+ S G D  +DD+ +LL E  D+G+            ++V   E++ +      DP  ERKP +G+  D   LLK +    SP ER P+SP   AK+  KPP  V  K     IHQPR
Sbjct:   56 FDGSAGAD--DDDLTDLLPEDLDVGVEEEFPNLEAQFEEMVKLAEAEEKTDSSAADPKVERKPPNGLIMDVKTLLKDMNIPKSPKERSPRSPRILAKYQMKPPHCVVAKRTALYIHQPR 172          
BLAST of Pisum_sativum_v1_Contig2255 vs. TrEMBL
Match: B9GM45_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_814836 PE=4 SV=1)

HSP 1 Score: 58.5362 bits (140), Expect = 3.181e-7
Identity = 38/115 (33.04%), Postives = 57/115 (49.57%), Query Frame = 2
Query:   26 DGIDTSNDDIENLLAETFDLGIXXXXXXXXXXXXKLVMSDESQAQECPITDDPVEERKPLHGVNKDASALLKIL----SPNERGPKSPVGSAKHFEKPPQYVNLKCAPQRIHQPR 358
            DG   ++DD+ +LL E  D+G+             +++++  +  +   TD P  E KPL+G+  D  ALL  L    SP +R P+SP    K+  KP   V+ K     IHQPR
Sbjct:   57 DGSAGADDDLTDLLPEDLDVGVEEFSNLEAQFEEMVMLAEAEEKTDFSATD-PKVEMKPLNGLLVDVKALLNDLNVPKSPKDRNPRSPRTPTKYQTKPLHCVSGKRTALNIHQPR 170          
BLAST of Pisum_sativum_v1_Contig2255 vs. TrEMBL
Match: A9P8V9_POPTR (Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1)

HSP 1 Score: 58.5362 bits (140), Expect = 3.181e-7
Identity = 38/115 (33.04%), Postives = 57/115 (49.57%), Query Frame = 2
Query:   26 DGIDTSNDDIENLLAETFDLGIXXXXXXXXXXXXKLVMSDESQAQECPITDDPVEERKPLHGVNKDASALLKIL----SPNERGPKSPVGSAKHFEKPPQYVNLKCAPQRIHQPR 358
            DG   ++DD+ +LL E  D+G+             +++++  +  +   TD P  E KPL+G+  D  ALL  L    SP +R P+SP    K+  KP   V+ K     IHQPR
Sbjct:   57 DGSAGADDDLTDLLPEDLDVGVEEFSNLEAQFEEMVMLAEAEEKTDFSATD-PKVEMKPLNGLLVDVKALLNDLNVPKSPKDRNPRSPRTPTKYQTKPLHCVSGKRTALNIHQPR 170          
The following BLAST results are available for this feature:
BLAST of Pisum_sativum_v1_Contig2255 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Pisum sativum unigene v1 vs Trembl)
Total hits: 8
Match NameE-valueIdentityDescription
B7FH52_MEDTR3.852e-3768.38Putative uncharacterized protein OS=Medicago trunc... [more]
C6SYK1_SOYBN4.731e-1949.55Putative uncharacterized protein OS=Glycine max PE... [more]
C6SYC3_SOYBN1.054e-1848.74Putative uncharacterized protein OS=Glycine max PE... [more]
D7SQ18_VITVI8.641e-1339.17Whole genome shotgun sequence of line PN40024, sca... [more]
B9GWK2_POPTR7.570e-936.13Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]
A9PJP9_9ROSI1.291e-836.13Putative uncharacterized protein OS=Populus tricho... [more]
B9GM45_POPTR3.181e-733.04Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]
A9P8V9_POPTR3.181e-733.04Putative uncharacterized protein OS=Populus tricho... [more]
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InterPro
Analysis Name: InterProScan analysis for Pisum sativum unigene v1
Date Performed: 2010-12-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSEGsegsegcoord: 31..42
score
NoneNo IPR availableSEGsegsegcoord: 7..20
score

Sequences
The following sequences are available for this feature:

contig sequence

>Pisum_sativum_v1_Contig2255 ID=Pisum_sativum_v1_Contig2255; Name=Pisum_sativum_v1_Contig2255; organism=Pisum sativum; type=contig; length=544bp
CGCAGGGGCAGATTTTGAAGTAAGTGATGGTATTGATACTTCTAATGATG
ATATAGAAAATCTGTTGGCAGAAACTTTTGATCTTGGCATAGAAGAGGAC
TTCAATTTTCTAGAGAACGAGTTTGAGAAATTGGTGATGTCCGACGAATC
TCAAGCTCAAGAGTGTCCGATTACGGACGATCCCGTTGAGGAAAGAAAGC
CTCTTCATGGTGTTAACAAGGACGCTTCGGCTCTTCTCAAGATCTTGTCC
CCAAATGAAAGGGGTCCCAAGTCACCTGTTGGATCCGCAAAGCACTTTGA
GAAGCCACCACAATATGTTAACCTCAAATGTGCACCTCAAAGAATTCACC
AACCTCGTTAGAAGAAACTTCGAAGCTCATAGTGATGATAACCTGCTTGA
ACCGCAAGTTTCTTCTGACTAAGTATGCCTCTCTGTTGAAATAACTTGTG
TACATAGGAGATGTAGTATGTCTTTGTATTTTTCTTGTTGATTGTCTTGT
ATATTTAATGGTAGGTGAGACTTTAAATTATGAACAGCCTAAAT
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