GT626829

EST Overview


Name	GT626829
Unique Name	GT626829
Type	EST
Organism	Lens culinaris (lentil)
Sequence length	649

Unigenes

This EST is part of the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
Lens culinaris unigene v1	Lens culinaris unigene v1	EST

Libraries


Library Name	Type
LIBEST_025390 LCUSE1NG	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
Lens culinaris unigene v1	2010-12-27
Homology Analysis: Lens culinaris unigene v1 vs Trembl	2010-12-28
InterProScan analysis for Lens culinaris unigene v1	2011-01-06

Homology

[Close]

BLAST of GT626829 vs. TrEMBL
Match: C6TJ42_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.259e-18
Identity = 57/118 (48.31%), Postives = 68/118 (57.63%), Query Frame = 3

Query:    3 LIEPKKDIVILPGMYLQQPVAVPDTTSTKEPDETEQHERDPPVTGSAKHV--XXXXXXXXXXXXXXFGARKHRPRGDHHHSSSTARPRVDHHHSSSNARHPRKPV-QQWVRKDTPSNK 347
            LIEPKK++VILPGMYL QPVA+P +T TKE DE +Q  +DPP     KH                 FGAR+ + R D              +HSSS AR+PRKP  QQWVR+D PSNK
Sbjct:  264 LIEPKKEMVILPGMYLPQPVAMPSSTPTKESDEPQQ--KDPPAVVPEKHAGGTSNSSIPSSSRQRNFGARRQKARSD--------------NHSSSTARNPRKPAQQQWVRRDNPSNK 365

[Close]

BLAST of GT626829 vs. TrEMBL
Match: A5BAH2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_010196 PE=4 SV=1)

HSP 1 Score: 60.4622 bits (145), Expect = 1.306e-7
Identity = 42/115 (36.52%), Postives = 55/115 (47.83%), Query Frame = 3

Query:    3 LIEPKKDIVILPGMYLQQPVAVPDTTSTKEPDETEQHERDPPVTGSAKHVXXXXXXXXXXXXXXFGARKHRPRGDHHHSSSTARPRVDHHHSSSNARHPRKPVQQWVRKD-TPSN 344
            LIEPKK+ VI+PGM+LQ+P+A P   S K P  +EQ +RD P+  S                   G R+HR                         R+ RKPV+QWV+KD TP+N
Sbjct:  415 LIEPKKNGVIVPGMFLQRPIAPPPALSAKGP-TSEQQQRD-PIIFSETSSSGSSSTASTSEQRNLGMRRHR------------------------VRNSRKPVKQWVKKDNTPTN 503

The following BLAST results are available for this feature:

BLAST of GT626829 vs. TrEMBL

BLAST of GT626829 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Lens culinaris unigene v1 vs Trembl)
Total hits: 2


Match Name	E-value	Identity	Description
C6TJ42_SOYBN	1.259e-18	48.31	Putative uncharacterized protein OS=Glycine max PE...	[more]
A5BAH2_VITVI	1.306e-7	36.52	Putative uncharacterized protein OS=Vitis vinifera...	[more]

InterPro

Analysis Name: InterProScan analysis for Lens culinaris unigene v1
Date Performed: 2011-01-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	SEG	seg	seg	coord: 51..64 score
None	No IPR available	SEG	seg	seg	coord: 27..39 score
None	No IPR available	SEG	seg	seg	coord: 34..53 score

Properties


Property Name	Value
Singlet in analysis	Lens culinaris unigene v1

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>GT626829 ID=GT626829; Name=GT626829; organism=Lens culinaris; type=EST; length=649bp
GTTTGATTGAACCCAAAAAAGATATAGTAATATTGCCTGGCATGTATCTT
CAACAACCGGTTGCAGTACCCGACACCACGTCAACCAAGGAACCTGATGA
GACTGAACAACATGAAAGAGATCCACCTGTAACTGGGTCTGCCAAACATG
TTAGTGGGACCTCAAATGGACCTAGTTCTAGTGGGAACAAGAATTTTGGT
GCAAGGAAGCATAGACCAAGAGGTGATCATCATCACTCTAGTTCGACTGC
AAGACCAAGAGTTGATCATCATCACTCTAGTTCGAATGCAAGACATCCAA
GAAAACCAGTCCAACAATGGGTTAGAAAAGATACTCCTAGCAATAAGCAA
TAGATTCTATCTTTCATTGCTGGTGTTCATACTTCATATTTATATTAATA
GAACTATCATATGTTTAGAGTGCGAAGAAATGTACCAACAGAGGAGGAAA
AATATCACAGGTAAAATAGAGGTAGGTATCCTTTTGGTTGGAGGAACAGA
AAGAAGCAAAATAAGGAAAAACCAAGTAGAGTGCTTAATTTCTCTCTAGG
TTCATATTCTTTTTGAATTATATAATTTTTGTTTTCATTTGGTATATTCC
ATGTAATTTATTTTTTATTCAACAATCAAGTTATACATTCTGCATTTCC

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