GT624550
EST Overview
Unigenes
This EST is part of the following unigenes:
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of GT624550 vs. TrEMBL
Match: B9SBE6_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0716650 PE=4 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 1.570e-12 Identity = 39/56 (69.64%), Postives = 43/56 (76.79%), Query Frame = 3 Query: 99 LMSCDKLDRVASWVGTNVASAFFASLERCSCINL-SXXXXXXXXXXXXRPLMLTKP 263 L+SCDKLDRVASWVG+NVASAFFASLERCSCINL + RPLML+KP Sbjct: 11 LISCDKLDRVASWVGSNVASAFFASLERCSCINLNTADPEDDDEEAKDRPLMLSKP 66
BLAST of GT624550 vs. TrEMBL
Match: B9GR35_POPTR (Predicted protein (Fragment) OS=Populus trichocarpa GN=POPTRDRAFT_409917 PE=4 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 2.050e-12 Identity = 37/52 (71.15%), Postives = 39/52 (75.00%), Query Frame = 3 Query: 102 MSCDKLDRVASWVGTNVASAFFASLERCSCINLSXXXXXXXXXXXXRPLMLT 257 MSC+KLDRVASWVG NVASAFFASLERCSCINL+ RPLMLT Sbjct: 21 MSCEKLDRVASWVGVNVASAFFASLERCSCINLNTTDLEDDEEARDRPLMLT 72
BLAST of GT624550 vs. TrEMBL
Match: A9NT62_PICSI (Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1) HSP 1 Score: 61.6178 bits (148), Expect = 3.064e-8 Identity = 30/48 (62.50%), Postives = 32/48 (66.67%), Query Frame = 3 Query: 108 CDKLDRVASWVGTNVASAFFASLERCSCINLSXXXXXXXXXXXXRPLM 251 C+KLDR A WVGT+V SAFFASLERCSCI LS RPLM Sbjct: 38 CNKLDRAAVWVGTSVVSAFFASLERCSCITLSNTDTEDEEEAKDRPLM 85
BLAST of GT624550 vs. TAIR peptide
Match: AT4G10810.1 (| Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G24026.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr4:6645986-6646231 REVERSE LENGTH=81) HSP 1 Score: 55.8398 bits (133), Expect = 1.485e-8 Identity = 25/33 (75.76%), Postives = 28/33 (84.85%), Query Frame = 3 Query: 105 SCDKLDRVASWVGTNVASAFFASLERCSCINLS 203 S +KLD+ ASWV T V SAFFASLERCSC+NLS Sbjct: 21 SLEKLDQAASWVSTTVISAFFASLERCSCVNLS 53 The following BLAST results are available for this feature:
BLAST of GT624550 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Lens culinaris unigene v1 vs Trembl) Total hits: 3
BLAST of GT624550 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Lens culinaris unigene v1 vs TAIR 10 peptide) Total hits: 1
InterPro
Analysis Name: InterProScan analysis for Lens culinaris unigene v1
Date Performed: 2011-01-06
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >GT624550 ID=GT624550; Name=GT624550; organism=Lens culinaris; type=EST; length=513bpback to top |