GT624550

EST Overview
NameGT624550
Unique NameGT624550
TypeEST
OrganismLens culinaris (lentil)
Sequence length513
Unigenes
This EST is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Lens culinaris unigene v1Lens culinaris unigene v1EST
Libraries
Library NameType
LIBEST_025390 LCUSE1NGcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
Lens culinaris unigene v12010-12-27
Homology Analysis: Lens culinaris unigene v1 vs Trembl2010-12-28
Homology Analysis: Lens culinaris unigene v1 vs TAIR 10 peptide2011-02-03
InterProScan analysis for Lens culinaris unigene v12011-01-06
Homology
BLAST of GT624550 vs. TrEMBL
Match: B9SBE6_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0716650 PE=4 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.570e-12
Identity = 39/56 (69.64%), Postives = 43/56 (76.79%), Query Frame = 3
Query:   99 LMSCDKLDRVASWVGTNVASAFFASLERCSCINL-SXXXXXXXXXXXXRPLMLTKP 263
            L+SCDKLDRVASWVG+NVASAFFASLERCSCINL +            RPLML+KP
Sbjct:   11 LISCDKLDRVASWVGSNVASAFFASLERCSCINLNTADPEDDDEEAKDRPLMLSKP 66          
BLAST of GT624550 vs. TrEMBL
Match: B9GR35_POPTR (Predicted protein (Fragment) OS=Populus trichocarpa GN=POPTRDRAFT_409917 PE=4 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.050e-12
Identity = 37/52 (71.15%), Postives = 39/52 (75.00%), Query Frame = 3
Query:  102 MSCDKLDRVASWVGTNVASAFFASLERCSCINLSXXXXXXXXXXXXRPLMLT 257
            MSC+KLDRVASWVG NVASAFFASLERCSCINL+            RPLMLT
Sbjct:   21 MSCEKLDRVASWVGVNVASAFFASLERCSCINLNTTDLEDDEEARDRPLMLT 72          
BLAST of GT624550 vs. TrEMBL
Match: A9NT62_PICSI (Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1)

HSP 1 Score: 61.6178 bits (148), Expect = 3.064e-8
Identity = 30/48 (62.50%), Postives = 32/48 (66.67%), Query Frame = 3
Query:  108 CDKLDRVASWVGTNVASAFFASLERCSCINLSXXXXXXXXXXXXRPLM 251
            C+KLDR A WVGT+V SAFFASLERCSCI LS            RPLM
Sbjct:   38 CNKLDRAAVWVGTSVVSAFFASLERCSCITLSNTDTEDEEEAKDRPLM 85          
BLAST of GT624550 vs. TAIR peptide
Match: AT4G10810.1 (| Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G24026.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr4:6645986-6646231 REVERSE LENGTH=81)

HSP 1 Score: 55.8398 bits (133), Expect = 1.485e-8
Identity = 25/33 (75.76%), Postives = 28/33 (84.85%), Query Frame = 3
Query:  105 SCDKLDRVASWVGTNVASAFFASLERCSCINLS 203
            S +KLD+ ASWV T V SAFFASLERCSC+NLS
Sbjct:   21 SLEKLDQAASWVSTTVISAFFASLERCSCVNLS 53          
The following BLAST results are available for this feature:
BLAST of GT624550 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Lens culinaris unigene v1 vs Trembl)
Total hits: 3
Match NameE-valueIdentityDescription
B9SBE6_RICCO1.570e-1269.64Putative uncharacterized protein OS=Ricinus commun... [more]
B9GR35_POPTR2.050e-1271.15Predicted protein (Fragment) OS=Populus trichocarp... [more]
A9NT62_PICSI3.064e-862.50Putative uncharacterized protein OS=Picea sitchens... [more]
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BLAST of GT624550 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Lens culinaris unigene v1 vs TAIR 10 peptide)
Total hits: 1
Match NameE-valueIdentityDescription
AT4G10810.11.485e-875.76| Symbols: | unknown protein; FUNCTIONS IN: molec... [more]
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InterPro
Analysis Name: InterProScan analysis for Lens culinaris unigene v1
Date Performed: 2011-01-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSEGsegsegcoord: 13..30
score: NAcoord: 71..85
score
NoneNo IPR availableSEGsegsegcoord: 14..31
score: NAcoord: 68..79
score
NoneNo IPR availableSEGsegsegcoord: 19..40
score
NoneNo IPR availableSEGsegsegcoord: 4..26
score: NAcoord: 59..76
score

Properties
Property NameValue
Singlet in analysisLens culinaris unigene v1
Sequences
The following sequences are available for this feature:

EST sequence

>GT624550 ID=GT624550; Name=GT624550; organism=Lens culinaris; type=EST; length=513bp
GTTCATCTCTCTTTGCTGCAGATCTCATTCCAATCCACATCAACAACAGT
TCGGATAAATCAAGAATGTCCAACAACAACAGCAGCAGCACGTCTGGTTT
GATGTCTTGCGACAAACTCGACAGAGTTGCCAGCTGGGTCGGCACTAACG
TGGCTTCTGCTTTCTTTGCTTCCTTGGAACGTTGTTCTTGCATCAACCTT
AGCACCACCGACACTGAAGATGACAACATCAATGATAATCGTCCTCTCAT
GCTTACCAAACCTGTTTCTCATCTACCCTTTGAGGGTCCCGCAACTACTC
TTCCGTCAAAATCTCAGCTTCGTTCTTGATCTCTTCATATCCCTCTTAAT
TCTCTTATGGGGTTTGTAATTGTAACTCTTTACGTTCTTGGGGTGTTGTA
GTTTTTGATTTTTTTTCATGAAAAAATTTAGTCTTTTTGTGTGTACGTGT
GTTGAATTTGTTGGATCTTGTTACCTTTTGTTTGATGTTCATGGAATTGT
TATGCCAGTATAT
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