GT627270

EST Overview
NameGT627270
Unique NameGT627270
TypeEST
OrganismLens culinaris (lentil)
Sequence length439
Unigenes
This EST is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Lens culinaris unigene v1Lens culinaris unigene v1EST
Libraries
Library NameType
LIBEST_025390 LCUSE1NGcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
Lens culinaris unigene v12010-12-27
Homology Analysis: Lens culinaris unigene v1 vs Trembl2010-12-28
InterProScan analysis for Lens culinaris unigene v12011-01-06
Homology
BLAST of GT627270 vs. TrEMBL
Match: B9RD21_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1608840 PE=4 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 3.070e-34
Identity = 71/83 (85.54%), Postives = 78/83 (93.98%), Query Frame = 3
Query:    3 DPNSVDYVTFEMLISETMVGGLIGRSGSNISRIRNESGAMIKVYGGKGEQKHRQIQFGGSAQQVALAKQRVDEYIYSQLIQQS 251
            DP S DYVT EM++SET+VGGLIGR GSNISRIRNESGAMIKVYGGKGE+KHR IQFGG+AQQVALAKQRVDEYIYSQL+QQ+
Sbjct:  267 DPTSADYVTLEMMVSETLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEKKHRHIQFGGTAQQVALAKQRVDEYIYSQLVQQA 349          
BLAST of GT627270 vs. TrEMBL
Match: D7SLW0_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_21.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00018244001 PE=4 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 1.523e-33
Identity = 72/83 (86.75%), Postives = 76/83 (91.57%), Query Frame = 3
Query:    3 DPNSVDYVTFEMLISETMVGGLIGRSGSNISRIRNESGAMIKVYGGKGEQKHRQIQFGGSAQQVALAKQRVDEYIYSQLIQQS 251
            DP S DYVT  M+I ET+VGGLIGR GSNISRIRNESGAMIKVYGGKGEQ HRQIQFGGSAQQVALAKQRVDEYIYSQL+QQ+
Sbjct:  255 DPASADYVTLNMMIPETLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQNHRQIQFGGSAQQVALAKQRVDEYIYSQLMQQA 337          
BLAST of GT627270 vs. TrEMBL
Match: A5C2J5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_031103 PE=4 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 2.689e-30
Identity = 69/83 (83.13%), Postives = 74/83 (89.16%), Query Frame = 3
Query:   12 SVDYVTFEMLISETMVGGLIGRSGSNISRIRNESGAMIKVYGGKGEQKHRQIQFGGSAQ---QVALAKQRVDEYIYSQLIQQS 251
            + DYVT  M+I ET+VGGLIGR GSNISRIRNESGAMIKVYGGKGEQ HRQIQFGGSAQ   QVALAKQRVDEYIYSQL+QQ+
Sbjct:  233 AADYVTLNMMIPETLVGGLIGRCGSNISRIRNESGAMIKVYGGKGEQNHRQIQFGGSAQQAYQVALAKQRVDEYIYSQLMQQA 315          
BLAST of GT627270 vs. TrEMBL
Match: B9MVB1_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_591799 PE=4 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 3.883e-29
Identity = 64/82 (78.05%), Postives = 73/82 (89.02%), Query Frame = 3
Query:   12 SVDYVTFEMLISETMVGGLIGRSGSNISRIRNESGAMIKVYGGKGEQKHRQIQFGGSAQQVALAKQRVDEYIYSQLIQQSDT 257
            + DYVT EM++ ETM+GGLIGRSGSNISRIR ESGA+IKV+GGKG QKHR IQ  GS+QQVALAKQRVDEYIYSQL+QQ+ T
Sbjct:  255 AADYVTMEMMVPETMMGGLIGRSGSNISRIRVESGAVIKVHGGKGAQKHRHIQLAGSSQQVALAKQRVDEYIYSQLVQQAGT 336          
BLAST of GT627270 vs. TrEMBL
Match: A9PA25_POPTR (Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 3.883e-29
Identity = 64/82 (78.05%), Postives = 73/82 (89.02%), Query Frame = 3
Query:   12 SVDYVTFEMLISETMVGGLIGRSGSNISRIRNESGAMIKVYGGKGEQKHRQIQFGGSAQQVALAKQRVDEYIYSQLIQQSDT 257
            + DYVT EM++ ETM+GGLIGRSGSNISRIR ESGA+IKV+GGKG QKHR IQ  GS+QQVALAKQRVDEYIYSQL+QQ+ T
Sbjct:   73 AADYVTMEMMVPETMMGGLIGRSGSNISRIRVESGAVIKVHGGKGAQKHRHIQLAGSSQQVALAKQRVDEYIYSQLVQQAGT 154          
BLAST of GT627270 vs. TrEMBL
Match: A9NRZ8_PICSI (Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1)

HSP 1 Score: 59.6918 bits (143), Expect = 1.099e-7
Identity = 34/71 (47.89%), Postives = 48/71 (67.61%), Query Frame = 3
Query:   24 VTFEMLISETMVGGLIGRSGSNISRIRNESGAMIKVYGGKGEQKHRQIQFGGSAQQVALAKQRVDEYIYSQ 236
            VT EM I  ++ GG+IG+ G NIS+IR+ SGA++KV G K +   R I F G+A QVA A+  V+ +I +Q
Sbjct:  329 VTVEMKIPSSVAGGVIGKRGDNISQIRSLSGAIVKVIGEK-DGATRTIFFEGTAHQVATAQNLVNNHINAQ 398          
The following BLAST results are available for this feature:
BLAST of GT627270 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Lens culinaris unigene v1 vs Trembl)
Total hits: 6
Match NameE-valueIdentityDescription
B9RD21_RICCO3.070e-3485.54Putative uncharacterized protein OS=Ricinus commun... [more]
D7SLW0_VITVI1.523e-3386.75Whole genome shotgun sequence of line PN40024, sca... [more]
A5C2J5_VITVI2.689e-3083.13Putative uncharacterized protein OS=Vitis vinifera... [more]
B9MVB1_POPTR3.883e-2978.05Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]
A9PA25_POPTR3.883e-2978.05Putative uncharacterized protein OS=Populus tricho... [more]
A9NRZ8_PICSI1.099e-747.89Putative uncharacterized protein OS=Picea sitchens... [more]
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InterPro
Analysis Name: InterProScan analysis for Lens culinaris unigene v1
Date Performed: 2011-01-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004087K HomologySMARTSM00322no descriptioncoord: 6..76
score: 2
IPR004088K Homology, type 1PROFILEPS50084KH_TYPE_1coord: 7..71
score: 14
IPR018111K Homology, type 1, subgroupPFAMPF00013KH_1coord: 9..70
score: 1
NoneNo IPR availableGENE3D3.30.1370.10no descriptioncoord: 8..75
score: 2.7
NoneNo IPR availablePANTHERPTHR10288RNA-BINDING PROTEIN RELATEDcoord: 1..85
score: 3.5
NoneNo IPR availableSUPERFAMILY54791Eukaryotic type KH-domain (KH-domain type I)coord: 6..82
score: 6.6

Properties
Property NameValue
Singlet in analysisLens culinaris unigene v1
Sequences
The following sequences are available for this feature:

EST sequence

>GT627270 ID=GT627270; Name=GT627270; organism=Lens culinaris; type=EST; length=439bp
TTGACCCAAATTCAGTTGATTATGTTACATTCGAGATGCTGATTTCGGAA
ACAATGGTTGGTGGGTTGATTGGCAGAAGCGGCTCAAACATATCAAGGAT
CAGAAATGAGTCTGGAGCAATGATCAAGGTTTATGGGGGAAAAGGTGAAC
AAAAGCATAGGCAGATTCAATTTGGTGGCAGTGCCCAACAGGTAGCTTTG
GCAAAACAGAGGGTTGATGAATATATATACTCTCAGTTGATACAACAATC
TGATACCTAATCAGCGTAGGTATTTGAGAATTTGGTAAATTGAAATTGTA
AATTTTTTAGTAGACAAGAAACATTGTTGTAATAAGTTAATAACAAAGGC
TCTTCAATTTATGTAGAAGCTTTATAATCTCAATTTTAGAGGTGGCATCT
TTCATAGTGTAAACATTGTAACAACAAAGGATTAAAATT
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Annotated Terms
The following terms have been associated with this EST:
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
Vocabulary: INTERPRO
TermDefinition
IPR004087KH_dom
IPR004088KH_dom_type_1
IPR018111K Homology, type 1, subgroup