GT626300

EST Overview
NameGT626300
Unique NameGT626300
TypeEST
OrganismLens culinaris (lentil)
Sequence length432
Unigenes
This EST is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Lens culinaris unigene v1Lens culinaris unigene v1EST
Libraries
Library NameType
LIBEST_025390 LCUSE1NGcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
Lens culinaris unigene v12010-12-27
Homology Analysis: Lens culinaris unigene v1 vs Trembl2010-12-28
Homology Analysis: Lens culinaris unigene v1 vs TAIR 10 peptide2011-02-03
InterProScan analysis for Lens culinaris unigene v12011-01-06
Homology
BLAST of GT626300 vs. TrEMBL
Match: Q2PEV8_TRIPR (Putative DNA binding protein (Fragment) OS=Trifolium pratense PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 7.409e-20
Identity = 49/66 (74.24%), Postives = 53/66 (80.30%), Query Frame = 2
Query:    2 RLSWGRSPANKQTQQDPNQWN-----GSSGYFGYPQ-GYENYAYAPA-AGQDPNIYGSYPAGYANY 178
            RLSWGR+P+NKQTQQDPNQWN     G  GY+GYPQ GYENY YA A AGQDPN+YGSYP GYA Y
Sbjct:  325 RLSWGRTPSNKQTQQDPNQWNAAAAGGGGGYYGYPQGGYENYGYAAAPAGQDPNVYGSYP-GYAGY 389          
BLAST of GT626300 vs. TrEMBL
Match: B9I0E1_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_727110 PE=4 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.308e-16
Identity = 42/60 (70.00%), Postives = 47/60 (78.33%), Query Frame = 2
Query:    2 RLSWGRSPANKQTQQDPNQWNGSSGYFGYPQGYENYAYAPAAGQDPNI-YGSYPAGYANY 178
            RLSWGRSP+NKQ Q D +QWNG  GY+GYPQGY+ Y YA AA QDPN+ YG YP GY NY
Sbjct:  335 RLSWGRSPSNKQVQPDQSQWNGG-GYYGYPQGYDAYGYAAAAPQDPNMYYGGYP-GYGNY 392          
BLAST of GT626300 vs. TrEMBL
Match: B9RXN0_RICCO (Nuclear acid binding protein, putative OS=Ricinus communis GN=RCOM_0905080 PE=4 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 4.970e-16
Identity = 43/60 (71.67%), Postives = 48/60 (80.00%), Query Frame = 2
Query:    2 RLSWGRSPANKQTQQDPNQWNGSSGYFGYPQGYENYAYAPAAGQDPNI-YGSYPAGYANY 178
            RLSWGRSP+NKQ Q D NQWN  +GY+GY QGYENY YAPA  QDPN+ YG+YP GY NY
Sbjct:  356 RLSWGRSPSNKQPQPDANQWN--AGYYGYAQGYENYGYAPAP-QDPNMYYGNYP-GYGNY 411          
BLAST of GT626300 vs. TrEMBL
Match: D7T8B4_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_90.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00037635001 PE=4 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.727e-14
Identity = 41/60 (68.33%), Postives = 45/60 (75.00%), Query Frame = 2
Query:    2 RLSWGRSPANKQTQQDPNQWNGSSGYFGYPQGYENYAYAPAAGQDPNI-YGSYPAGYANY 178
            RLSWGRSP+NKQ Q D  QWNG  GY+GY QGYE Y YAP   QDPN+ YG+YP GY NY
Sbjct:  118 RLSWGRSPSNKQAQPDQAQWNG--GYYGYAQGYEAYGYAPPP-QDPNMYYGAYP-GYGNY 173          
BLAST of GT626300 vs. TrEMBL
Match: A9PGI8_POPTR (Putative uncharacterized protein OS=Populus trichocarpa PE=4 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.727e-14
Identity = 41/66 (62.12%), Postives = 47/66 (71.21%), Query Frame = 2
Query:    2 RLSWGRSPANKQTQQDPNQWNGSSGYFGYPQGYENYAYAPAAG------QDPNI-YGSYPAGYANY 178
            RLSWGRSP+NKQ Q D +QWNG  GY+GYPQGY+ Y YA AA       QDP++ YG YP GY NY
Sbjct:   13 RLSWGRSPSNKQAQPDQSQWNG-GGYYGYPQGYDAYGYAAAAAAAAAAPQDPSMYYGGYP-GYGNY 76          
BLAST of GT626300 vs. TrEMBL
Match: A5C5B3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_039907 PE=4 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.727e-14
Identity = 41/60 (68.33%), Postives = 45/60 (75.00%), Query Frame = 2
Query:    2 RLSWGRSPANKQTQQDPNQWNGSSGYFGYPQGYENYAYAPAAGQDPNI-YGSYPAGYANY 178
            RLSWGRSP+NKQ Q D  QWNG  GY+GY QGYE Y YAP   QDPN+ YG+YP GY NY
Sbjct:  336 RLSWGRSPSNKQAQPDQAQWNG--GYYGYAQGYEAYGYAPPP-QDPNMYYGAYP-GYGNY 391          
BLAST of GT626300 vs. TrEMBL
Match: B9SAD4_RICCO (Nuclear acid binding protein, putative OS=Ricinus communis GN=RCOM_0585010 PE=4 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 6.075e-14
Identity = 38/59 (64.41%), Postives = 43/59 (72.88%), Query Frame = 2
Query:    2 RLSWGRSPANKQTQQDPNQWNGSSGYFGYPQGYENYAYAPAAGQDPNIYGSYPAGYANY 178
            RLSWGRSP+NKQ Q D +QWNG  GY+GY QGY+ Y YAP   QDPN+Y S   GY NY
Sbjct:  332 RLSWGRSPSNKQAQPDQSQWNG--GYYGYAQGYDAYGYAPP--QDPNMYYSGYPGYGNY 386          
BLAST of GT626300 vs. TrEMBL
Match: A9NWA0_PICSI (Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.768e-13
Identity = 41/68 (60.29%), Postives = 44/68 (64.71%), Query Frame = 2
Query:    2 RLSWGRSPANKQT-------QQDPNQWNGSSGYFGYPQGYENYAYAPAAGQDPNI--YGSYPAGYANY 178
            RLSWGRSPANKQT       Q DPNQWNG   Y+ Y QGYE Y YAP A QDP +  YG +P GY  Y
Sbjct:  329 RLSWGRSPANKQTASWGVQPQPDPNQWNGGGAYYSYGQGYEAYGYAPPA-QDPTMYGYGGFP-GYGTY 394          
BLAST of GT626300 vs. TrEMBL
Match: Q9LEB4_NICPL (RNA Binding Protein 45 OS=Nicotiana plumbaginifolia GN=rbp45 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.309e-13
Identity = 42/61 (68.85%), Postives = 47/61 (77.05%), Query Frame = 2
Query:    2 RLSWGRSPANKQTQQDPNQWNGSSG-YFGYPQGYENYAYAPAAGQDPNI-YGSYPAGYANY 178
            RLSWGRSP++KQT Q   QW GS G Y+GY QGYE Y YAP A QDPN+ YG+YP GYANY
Sbjct:  348 RLSWGRSPSSKQTDQ--TQWGGSGGAYYGYGQGYEAYGYAPPA-QDPNMYYGNYP-GYANY 404          
BLAST of GT626300 vs. TrEMBL
Match: B9H1C9_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_713522 PE=4 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.015e-13
Identity = 41/61 (67.21%), Postives = 46/61 (75.41%), Query Frame = 2
Query:    2 RLSWGRSPANKQTQQDPNQWNGSSGYFGY-PQGYENYAYAPAAGQDPNI-YGSYPAGYANY 178
            RLSWGR+P+NKQ Q D NQ+ G  GY+GY  QGYENY YAPA  QDPN+ YG YP GY NY
Sbjct:  315 RLSWGRNPSNKQAQPDANQYGG--GYYGYGQQGYENYGYAPAT-QDPNMYYGGYP-GYGNY 371          
BLAST of GT626300 vs. TAIR peptide
Match: AT4G27000.1 (| Symbols: ATRBP45C | RNA-binding (RRM/RBD/RNP motifs) family protein | chr4:13554983-13557763 REVERSE LENGTH=415)

HSP 1 Score: 77.0258 bits (188), Expect = 4.325e-15
Identity = 40/62 (64.52%), Postives = 43/62 (69.35%), Query Frame = 2
Query:    2 RLSWGRSPANKQTQQDPNQWNGSSGYFGY-PQGYENYAYAPAAGQDPN-IYGSYP-AGYANY 178
            RLSWGRSP+NKQTQ D  Q+ G  GY+GY PQGYE Y YAP   QDPN  YG Y   GY NY
Sbjct:  344 RLSWGRSPSNKQTQPDQAQYGGGGGYYGYPPQGYEAYGYAPPP-QDPNAYYGGYAGGGYGNY 404          
BLAST of GT626300 vs. TAIR peptide
Match: AT5G19350.2 (| Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr5:6518978-6521295 FORWARD LENGTH=421)

HSP 1 Score: 59.6918 bits (143), Expect = 7.145e-10
Identity = 30/61 (49.18%), Postives = 37/61 (60.66%), Query Frame = 2
Query:    2 RLSWGRSPANKQ--TQQDPNQWNGSSGYFGYPQGYENYAYAPAAGQDPNIYGSYPAGYANY 178
            R+SW ++P      TQ DPNQWNG   Y+GY QGY+ YAY   A QDP++Y     GY  Y
Sbjct:  299 RISWSKNPGQDGWVTQADPNQWNG---YYGYGQGYDAYAY--GATQDPSVYAYGGYGYPQY 354          
BLAST of GT626300 vs. TAIR peptide
Match: AT5G19350.1 (| Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr5:6518978-6521295 FORWARD LENGTH=425)

HSP 1 Score: 59.6918 bits (143), Expect = 7.145e-10
Identity = 30/61 (49.18%), Postives = 37/61 (60.66%), Query Frame = 2
Query:    2 RLSWGRSPANKQ--TQQDPNQWNGSSGYFGYPQGYENYAYAPAAGQDPNIYGSYPAGYANY 178
            R+SW ++P      TQ DPNQWNG   Y+GY QGY+ YAY   A QDP++Y     GY  Y
Sbjct:  303 RISWSKNPGQDGWVTQADPNQWNG---YYGYGQGYDAYAY--GATQDPSVYAYGGYGYPQY 358          
BLAST of GT626300 vs. TAIR peptide
Match: AT5G54900.1 (| Symbols: ATRBP45A, RBP45A | RNA-binding protein 45A | chr5:22295412-22298126 FORWARD LENGTH=387)

HSP 1 Score: 56.225 bits (134), Expect = 7.900e-9
Identity = 35/62 (56.45%), Postives = 37/62 (59.68%), Query Frame = 2
Query:    2 RLSWGRSPANKQTQQDPNQWNGSSGYFGYP---QGYENYAYAPAAGQDPNIYGSYPAGYANY 178
            RLSWGRSP NKQ+ Q   QWNG  GY+GYP   QG   YA  P   QDPN Y     GY NY
Sbjct:  326 RLSWGRSP-NKQSDQA--QWNGG-GYYGYPPQPQGGYGYAAQPPT-QDPNAYYGGYTGYGNY 382          
BLAST of GT626300 vs. TAIR peptide
Match: AT1G11650.2 (| Symbols: ATRBP45B, RBP45B | RNA-binding (RRM/RBD/RNP motifs) family protein | chr1:3914895-3917941 FORWARD LENGTH=405)

HSP 1 Score: 50.447 bits (119), Expect = 4.335e-7
Identity = 31/62 (50.00%), Postives = 35/62 (56.45%), Query Frame = 2
Query:    2 RLSWGRSPANKQTQQDPNQWNGSSGYFGYPQGYENYAYAPAAGQDPNIY------GSYPAGY 169
            RLSWGRSP+NKQ+  DP+Q+     Y GY QG E Y Y     QDPN Y      G Y  GY
Sbjct:  327 RLSWGRSPSNKQS-GDPSQFY----YGGYGQGQEQYGY--TMPQDPNAYYGGYSGGGYSGGY 381          
The following BLAST results are available for this feature:
BLAST of GT626300 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Lens culinaris unigene v1 vs Trembl)
Total hits: 10
Match NameE-valueIdentityDescription
Q2PEV8_TRIPR7.409e-2074.24Putative DNA binding protein (Fragment) OS=Trifoli... [more]
B9I0E1_POPTR1.308e-1670.00Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]
B9RXN0_RICCO4.970e-1671.67Nuclear acid binding protein, putative OS=Ricinus ... [more]
D7T8B4_VITVI2.727e-1468.33Whole genome shotgun sequence of line PN40024, sca... [more]
A9PGI8_POPTR2.727e-1462.12Putative uncharacterized protein OS=Populus tricho... [more]
A5C5B3_VITVI2.727e-1468.33Putative uncharacterized protein OS=Vitis vinifera... [more]
B9SAD4_RICCO6.075e-1464.41Nuclear acid binding protein, putative OS=Ricinus ... [more]
A9NWA0_PICSI1.768e-1360.29Putative uncharacterized protein OS=Picea sitchens... [more]
Q9LEB4_NICPL2.309e-1368.85RNA Binding Protein 45 OS=Nicotiana plumbaginifoli... [more]
B9H1C9_POPTR3.015e-1367.21Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]
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BLAST of GT626300 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Lens culinaris unigene v1 vs TAIR 10 peptide)
Total hits: 5
Match NameE-valueIdentityDescription
AT4G27000.14.325e-1564.52| Symbols: ATRBP45C | RNA-binding (RRM/RBD/RNP mot... [more]
AT5G19350.27.145e-1049.18| Symbols: | RNA-binding (RRM/RBD/RNP motifs) fam... [more]
AT5G19350.17.145e-1049.18| Symbols: | RNA-binding (RRM/RBD/RNP motifs) fam... [more]
AT5G54900.17.900e-956.45| Symbols: ATRBP45A, RBP45A | RNA-binding protein ... [more]
AT1G11650.24.335e-750.00| Symbols: ATRBP45B, RBP45B | RNA-binding (RRM/RBD... [more]
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InterPro
Analysis Name: InterProScan analysis for Lens culinaris unigene v1
Date Performed: 2011-01-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSEGsegsegcoord: 60..67
score
NoneNo IPR availableSEGsegsegcoord: 57..67
score
NoneNo IPR availableSEGsegsegcoord: 1..8
score

Properties
Property NameValue
Singlet in analysisLens culinaris unigene v1
Sequences
The following sequences are available for this feature:

EST sequence

>GT626300 ID=GT626300; Name=GT626300; organism=Lens culinaris; type=EST; length=432bp
TCGACTTTCATGGGGCCGAAGCCCAGCAAACAAACAGACTCAACAAGATC
CAAACCAGTGGAATGGTAGTAGTGGATACTTTGGATATCCCCAGGGTTAT
GAAAATTATGCTTACGCCCCTGCTGCTGGACAGGACCCCAATATATATGG
CAGTTATCCTGCAGGGTATGCTAACTACCAGCCTCCTCAGCAGCAACAGC
AATTAGGATATAGCTAAAAAGCAGCTCCAAAATTTCTGTTCTGTACTTTC
TGTGATACTTAATTTTGTTTGCTTCTTTTCGTGTCTTGTGGGTTTTGAAA
TCCAACTTGCTGTGTTTTTGTTTAACTTTATCCTTCCTATGATTGCTAAG
AACATTGATATTCTATGCGAACCTTATGTACCATTAAAATATTGTTTGCT
GAATGCTTTTATCTATATTTTATGAATTGCTC
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