GT626300
EST Overview
Unigenes
This EST is part of the following unigenes:
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of GT626300 vs. TrEMBL
Match: Q2PEV8_TRIPR (Putative DNA binding protein (Fragment) OS=Trifolium pratense PE=2 SV=1) HSP 1 Score: 100.138 bits (248), Expect = 7.409e-20 Identity = 49/66 (74.24%), Postives = 53/66 (80.30%), Query Frame = 2 Query: 2 RLSWGRSPANKQTQQDPNQWN-----GSSGYFGYPQ-GYENYAYAPA-AGQDPNIYGSYPAGYANY 178 RLSWGR+P+NKQTQQDPNQWN G GY+GYPQ GYENY YA A AGQDPN+YGSYP GYA Y Sbjct: 325 RLSWGRTPSNKQTQQDPNQWNAAAAGGGGGYYGYPQGGYENYGYAAAPAGQDPNVYGSYP-GYAGY 389
BLAST of GT626300 vs. TrEMBL
Match: B9I0E1_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_727110 PE=4 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 1.308e-16 Identity = 42/60 (70.00%), Postives = 47/60 (78.33%), Query Frame = 2 Query: 2 RLSWGRSPANKQTQQDPNQWNGSSGYFGYPQGYENYAYAPAAGQDPNI-YGSYPAGYANY 178 RLSWGRSP+NKQ Q D +QWNG GY+GYPQGY+ Y YA AA QDPN+ YG YP GY NY Sbjct: 335 RLSWGRSPSNKQVQPDQSQWNGG-GYYGYPQGYDAYGYAAAAPQDPNMYYGGYP-GYGNY 392
BLAST of GT626300 vs. TrEMBL
Match: B9RXN0_RICCO (Nuclear acid binding protein, putative OS=Ricinus communis GN=RCOM_0905080 PE=4 SV=1) HSP 1 Score: 87.4261 bits (215), Expect = 4.970e-16 Identity = 43/60 (71.67%), Postives = 48/60 (80.00%), Query Frame = 2 Query: 2 RLSWGRSPANKQTQQDPNQWNGSSGYFGYPQGYENYAYAPAAGQDPNI-YGSYPAGYANY 178 RLSWGRSP+NKQ Q D NQWN +GY+GY QGYENY YAPA QDPN+ YG+YP GY NY Sbjct: 356 RLSWGRSPSNKQPQPDANQWN--AGYYGYAQGYENYGYAPAP-QDPNMYYGNYP-GYGNY 411
BLAST of GT626300 vs. TrEMBL
Match: D7T8B4_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_90.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00037635001 PE=4 SV=1) HSP 1 Score: 81.6481 bits (200), Expect = 2.727e-14 Identity = 41/60 (68.33%), Postives = 45/60 (75.00%), Query Frame = 2 Query: 2 RLSWGRSPANKQTQQDPNQWNGSSGYFGYPQGYENYAYAPAAGQDPNI-YGSYPAGYANY 178 RLSWGRSP+NKQ Q D QWNG GY+GY QGYE Y YAP QDPN+ YG+YP GY NY Sbjct: 118 RLSWGRSPSNKQAQPDQAQWNG--GYYGYAQGYEAYGYAPPP-QDPNMYYGAYP-GYGNY 173
BLAST of GT626300 vs. TrEMBL
Match: A9PGI8_POPTR (Putative uncharacterized protein OS=Populus trichocarpa PE=4 SV=1) HSP 1 Score: 81.6481 bits (200), Expect = 2.727e-14 Identity = 41/66 (62.12%), Postives = 47/66 (71.21%), Query Frame = 2 Query: 2 RLSWGRSPANKQTQQDPNQWNGSSGYFGYPQGYENYAYAPAAG------QDPNI-YGSYPAGYANY 178 RLSWGRSP+NKQ Q D +QWNG GY+GYPQGY+ Y YA AA QDP++ YG YP GY NY Sbjct: 13 RLSWGRSPSNKQAQPDQSQWNG-GGYYGYPQGYDAYGYAAAAAAAAAAPQDPSMYYGGYP-GYGNY 76
BLAST of GT626300 vs. TrEMBL
Match: A5C5B3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_039907 PE=4 SV=1) HSP 1 Score: 81.6481 bits (200), Expect = 2.727e-14 Identity = 41/60 (68.33%), Postives = 45/60 (75.00%), Query Frame = 2 Query: 2 RLSWGRSPANKQTQQDPNQWNGSSGYFGYPQGYENYAYAPAAGQDPNI-YGSYPAGYANY 178 RLSWGRSP+NKQ Q D QWNG GY+GY QGYE Y YAP QDPN+ YG+YP GY NY Sbjct: 336 RLSWGRSPSNKQAQPDQAQWNG--GYYGYAQGYEAYGYAPPP-QDPNMYYGAYP-GYGNY 391
BLAST of GT626300 vs. TrEMBL
Match: B9SAD4_RICCO (Nuclear acid binding protein, putative OS=Ricinus communis GN=RCOM_0585010 PE=4 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 6.075e-14 Identity = 38/59 (64.41%), Postives = 43/59 (72.88%), Query Frame = 2 Query: 2 RLSWGRSPANKQTQQDPNQWNGSSGYFGYPQGYENYAYAPAAGQDPNIYGSYPAGYANY 178 RLSWGRSP+NKQ Q D +QWNG GY+GY QGY+ Y YAP QDPN+Y S GY NY Sbjct: 332 RLSWGRSPSNKQAQPDQSQWNG--GYYGYAQGYDAYGYAPP--QDPNMYYSGYPGYGNY 386
BLAST of GT626300 vs. TrEMBL
Match: A9NWA0_PICSI (Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 1.768e-13 Identity = 41/68 (60.29%), Postives = 44/68 (64.71%), Query Frame = 2 Query: 2 RLSWGRSPANKQT-------QQDPNQWNGSSGYFGYPQGYENYAYAPAAGQDPNI--YGSYPAGYANY 178 RLSWGRSPANKQT Q DPNQWNG Y+ Y QGYE Y YAP A QDP + YG +P GY Y Sbjct: 329 RLSWGRSPANKQTASWGVQPQPDPNQWNGGGAYYSYGQGYEAYGYAPPA-QDPTMYGYGGFP-GYGTY 394
BLAST of GT626300 vs. TrEMBL
Match: Q9LEB4_NICPL (RNA Binding Protein 45 OS=Nicotiana plumbaginifolia GN=rbp45 PE=2 SV=1) HSP 1 Score: 78.5666 bits (192), Expect = 2.309e-13 Identity = 42/61 (68.85%), Postives = 47/61 (77.05%), Query Frame = 2 Query: 2 RLSWGRSPANKQTQQDPNQWNGSSG-YFGYPQGYENYAYAPAAGQDPNI-YGSYPAGYANY 178 RLSWGRSP++KQT Q QW GS G Y+GY QGYE Y YAP A QDPN+ YG+YP GYANY Sbjct: 348 RLSWGRSPSSKQTDQ--TQWGGSGGAYYGYGQGYEAYGYAPPA-QDPNMYYGNYP-GYANY 404
BLAST of GT626300 vs. TrEMBL
Match: B9H1C9_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_713522 PE=4 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 3.015e-13 Identity = 41/61 (67.21%), Postives = 46/61 (75.41%), Query Frame = 2 Query: 2 RLSWGRSPANKQTQQDPNQWNGSSGYFGY-PQGYENYAYAPAAGQDPNI-YGSYPAGYANY 178 RLSWGR+P+NKQ Q D NQ+ G GY+GY QGYENY YAPA QDPN+ YG YP GY NY Sbjct: 315 RLSWGRNPSNKQAQPDANQYGG--GYYGYGQQGYENYGYAPAT-QDPNMYYGGYP-GYGNY 371
BLAST of GT626300 vs. TAIR peptide
Match: AT4G27000.1 (| Symbols: ATRBP45C | RNA-binding (RRM/RBD/RNP motifs) family protein | chr4:13554983-13557763 REVERSE LENGTH=415) HSP 1 Score: 77.0258 bits (188), Expect = 4.325e-15 Identity = 40/62 (64.52%), Postives = 43/62 (69.35%), Query Frame = 2 Query: 2 RLSWGRSPANKQTQQDPNQWNGSSGYFGY-PQGYENYAYAPAAGQDPN-IYGSYP-AGYANY 178 RLSWGRSP+NKQTQ D Q+ G GY+GY PQGYE Y YAP QDPN YG Y GY NY Sbjct: 344 RLSWGRSPSNKQTQPDQAQYGGGGGYYGYPPQGYEAYGYAPPP-QDPNAYYGGYAGGGYGNY 404
BLAST of GT626300 vs. TAIR peptide
Match: AT5G19350.2 (| Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr5:6518978-6521295 FORWARD LENGTH=421) HSP 1 Score: 59.6918 bits (143), Expect = 7.145e-10 Identity = 30/61 (49.18%), Postives = 37/61 (60.66%), Query Frame = 2 Query: 2 RLSWGRSPANKQ--TQQDPNQWNGSSGYFGYPQGYENYAYAPAAGQDPNIYGSYPAGYANY 178 R+SW ++P TQ DPNQWNG Y+GY QGY+ YAY A QDP++Y GY Y Sbjct: 299 RISWSKNPGQDGWVTQADPNQWNG---YYGYGQGYDAYAY--GATQDPSVYAYGGYGYPQY 354
BLAST of GT626300 vs. TAIR peptide
Match: AT5G19350.1 (| Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr5:6518978-6521295 FORWARD LENGTH=425) HSP 1 Score: 59.6918 bits (143), Expect = 7.145e-10 Identity = 30/61 (49.18%), Postives = 37/61 (60.66%), Query Frame = 2 Query: 2 RLSWGRSPANKQ--TQQDPNQWNGSSGYFGYPQGYENYAYAPAAGQDPNIYGSYPAGYANY 178 R+SW ++P TQ DPNQWNG Y+GY QGY+ YAY A QDP++Y GY Y Sbjct: 303 RISWSKNPGQDGWVTQADPNQWNG---YYGYGQGYDAYAY--GATQDPSVYAYGGYGYPQY 358
BLAST of GT626300 vs. TAIR peptide
Match: AT5G54900.1 (| Symbols: ATRBP45A, RBP45A | RNA-binding protein 45A | chr5:22295412-22298126 FORWARD LENGTH=387) HSP 1 Score: 56.225 bits (134), Expect = 7.900e-9 Identity = 35/62 (56.45%), Postives = 37/62 (59.68%), Query Frame = 2 Query: 2 RLSWGRSPANKQTQQDPNQWNGSSGYFGYP---QGYENYAYAPAAGQDPNIYGSYPAGYANY 178 RLSWGRSP NKQ+ Q QWNG GY+GYP QG YA P QDPN Y GY NY Sbjct: 326 RLSWGRSP-NKQSDQA--QWNGG-GYYGYPPQPQGGYGYAAQPPT-QDPNAYYGGYTGYGNY 382
BLAST of GT626300 vs. TAIR peptide
Match: AT1G11650.2 (| Symbols: ATRBP45B, RBP45B | RNA-binding (RRM/RBD/RNP motifs) family protein | chr1:3914895-3917941 FORWARD LENGTH=405) HSP 1 Score: 50.447 bits (119), Expect = 4.335e-7 Identity = 31/62 (50.00%), Postives = 35/62 (56.45%), Query Frame = 2 Query: 2 RLSWGRSPANKQTQQDPNQWNGSSGYFGYPQGYENYAYAPAAGQDPNIY------GSYPAGY 169 RLSWGRSP+NKQ+ DP+Q+ Y GY QG E Y Y QDPN Y G Y GY Sbjct: 327 RLSWGRSPSNKQS-GDPSQFY----YGGYGQGQEQYGY--TMPQDPNAYYGGYSGGGYSGGY 381 The following BLAST results are available for this feature:
BLAST of GT626300 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Lens culinaris unigene v1 vs Trembl) Total hits: 10
BLAST of GT626300 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Lens culinaris unigene v1 vs TAIR 10 peptide) Total hits: 5
InterPro
Analysis Name: InterProScan analysis for Lens culinaris unigene v1
Date Performed: 2011-01-06
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >GT626300 ID=GT626300; Name=GT626300; organism=Lens culinaris; type=EST; length=432bpback to top |