GT626836

EST Overview
NameGT626836
Unique NameGT626836
TypeEST
OrganismLens culinaris (lentil)
Sequence length457
Unigenes
This EST is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Lens culinaris unigene v1Lens culinaris unigene v1EST
Libraries
Library NameType
LIBEST_025390 LCUSE1NGcdna_library
Homology
BLAST of GT626836 vs. TrEMBL
Match: C6TN59_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 4.171e-23
Identity = 56/73 (76.71%), Postives = 64/73 (87.67%), Query Frame = 3
Query:    3 KYRKFLPVAEGTGIGSLEREQTEKILNKIMSKNNHDILNVNKAVTVHNVKKEKNRKGDKSKASSS--NKLKPQ 215
            KYRKFLPV EGTGIGSLEREQTEKILNKI+SKN+H+ILNV KAVT+HNVKKEK R+ +K KAS++   KLK Q
Sbjct:  197 KYRKFLPVVEGTGIGSLEREQTEKILNKIVSKNSHNILNVEKAVTMHNVKKEKKRRSEKGKASATTDKKLKTQ 269          
BLAST of GT626836 vs. TrEMBL
Match: D7U817_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_48.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00027422001 PE=4 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 3.904e-21
Identity = 50/72 (69.44%), Postives = 65/72 (90.28%), Query Frame = 3
Query:    3 KYRKFLPVAEGTGIGSLEREQTEKILNKIMSKNNHDILNVNKAVTVHNVKKEKNRKGDKSK-ASSSNKLKPQ 215
            KYRKFLPV EGTGIGSLE++QTEKILNK++SKN+H+ILNV+KA+ ++NVKKEK RK  + K +S+S+KLKP+
Sbjct:  237 KYRKFLPVVEGTGIGSLEKQQTEKILNKLISKNSHEILNVDKAINMYNVKKEKKRKNRQGKDSSTSSKLKPK 308          
BLAST of GT626836 vs. TrEMBL
Match: D7UCN0_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_46.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00027072001 PE=4 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 2.530e-20
Identity = 47/72 (65.28%), Postives = 64/72 (88.89%), Query Frame = 3
Query:    3 KYRKFLPVAEGTGIGSLEREQTEKILNKIMSKNNHDILNVNKAVTVHNVKKEKNRKGDKSK-ASSSNKLKPQ 215
            KYRKFLPV EGTGIGS E++QTEK+LN+++SKN+H+ILNV+KA+ ++NVKKEK RK  + K +S+S+KLKP+
Sbjct:  237 KYRKFLPVVEGTGIGSQEKQQTEKVLNRLISKNSHEILNVDKAINMYNVKKEKKRKNQRGKDSSTSSKLKPK 308          
BLAST of GT626836 vs. TrEMBL
Match: A5CBT4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_033191 PE=4 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 2.530e-20
Identity = 47/72 (65.28%), Postives = 64/72 (88.89%), Query Frame = 3
Query:    3 KYRKFLPVAEGTGIGSLEREQTEKILNKIMSKNNHDILNVNKAVTVHNVKKEKNRKGDKSK-ASSSNKLKPQ 215
            KYRKFLPV EGTGIGS E++QTEK+LN+++SKN+H+ILNV+KA+ ++NVKKEK RK  + K +S+S+KLKP+
Sbjct:  236 KYRKFLPVVEGTGIGSQEKQQTEKVLNRLISKNSHEILNVDKAINMYNVKKEKKRKNQRGKDSSTSSKLKPK 307          
BLAST of GT626836 vs. TrEMBL
Match: Q7XPU3_ORYSJ (OSJNBa0088H09.13 protein OS=Oryza sativa subsp. japonica GN=OSJNBa0088H09.13 PE=4 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 5.834e-17
Identity = 40/71 (56.34%), Postives = 59/71 (83.10%), Query Frame = 3
Query:    3 KYRKFLPVAEGTGIGSLEREQTEKILNKIMSKNNHDILNVNKAVTVHNVKKEKNRKGDKSKASSSNKLKPQ 215
            K+RKFLPV EG G+G+ E++Q +KILN +++K++ D ++V +A+T++ VKKEK R+ DK K+SSSNKLKPQ
Sbjct:  248 KHRKFLPVVEGKGMGNQEKQQNDKILNALLAKSSEDQMDVGRAITMYKVKKEKQRRKDKEKSSSSNKLKPQ 318          
BLAST of GT626836 vs. TrEMBL
Match: Q259U7_ORYSA (H0913C04.9 protein OS=Oryza sativa GN=H0913C04.9 PE=4 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 5.834e-17
Identity = 40/71 (56.34%), Postives = 59/71 (83.10%), Query Frame = 3
Query:    3 KYRKFLPVAEGTGIGSLEREQTEKILNKIMSKNNHDILNVNKAVTVHNVKKEKNRKGDKSKASSSNKLKPQ 215
            K+RKFLPV EG G+G+ E++Q +KILN +++K++ D ++V +A+T++ VKKEK R+ DK K+SSSNKLKPQ
Sbjct:  250 KHRKFLPVVEGKGMGNQEKQQNDKILNALLAKSSEDQMDVGRAITMYKVKKEKQRRKDKEKSSSSNKLKPQ 320          
BLAST of GT626836 vs. TrEMBL
Match: B8ART1_ORYSI (Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_17991 PE=4 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 5.834e-17
Identity = 40/71 (56.34%), Postives = 59/71 (83.10%), Query Frame = 3
Query:    3 KYRKFLPVAEGTGIGSLEREQTEKILNKIMSKNNHDILNVNKAVTVHNVKKEKNRKGDKSKASSSNKLKPQ 215
            K+RKFLPV EG G+G+ E++Q +KILN +++K++ D ++V +A+T++ VKKEK R+ DK K+SSSNKLKPQ
Sbjct:  209 KHRKFLPVVEGKGMGNQEKQQNDKILNALLAKSSEDQMDVGRAITMYKVKKEKQRRKDKEKSSSSNKLKPQ 279          
BLAST of GT626836 vs. TrEMBL
Match: C5XMQ1_SORBI (Putative uncharacterized protein Sb03g003790 OS=Sorghum bicolor GN=Sb03g003790 PE=4 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.300e-16
Identity = 40/71 (56.34%), Postives = 59/71 (83.10%), Query Frame = 3
Query:    3 KYRKFLPVAEGTGIGSLEREQTEKILNKIMSKNNHDILNVNKAVTVHNVKKEKNRKGDKSKASSSNKLKPQ 215
            K+RKFLPVAEG G+GSLE++Q +KILN ++++N+ + L+V KA+T++ VKKEK R+ +K  +S S+KLKPQ
Sbjct:  248 KHRKFLPVAEGKGMGSLEKQQNDKILNSLLARNSDEPLDVGKAITMYKVKKEKQRRKEKDMSSKSDKLKPQ 318          
BLAST of GT626836 vs. TrEMBL
Match: B9H4F0_POPTR (Predicted protein (Fragment) OS=Populus trichocarpa GN=POPTRDRAFT_206051 PE=4 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 3.781e-16
Identity = 39/67 (58.21%), Postives = 56/67 (83.58%), Query Frame = 3
Query:    3 KYRKFLPVAEGTGIGSLEREQTEKILNKIMSKNNHDILNVNKAVTVHNVKKEKNRKGDKSKASSSNK 203
            K+RKFLPV EG+GIGS E+EQT+++L+K++S N+H+ILNV+KAVT++NV KE+ R+    K SS+ K
Sbjct:  232 KHRKFLPVVEGSGIGSQEKEQTDRVLSKLISSNSHEILNVDKAVTMYNVNKERKRRNQYGKPSSTRK 298          
BLAST of GT626836 vs. TrEMBL
Match: B4FD87_MAIZE (Putative uncharacterized protein OS=Zea mays PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 4.939e-16
Identity = 39/71 (54.93%), Postives = 60/71 (84.51%), Query Frame = 3
Query:    3 KYRKFLPVAEGTGIGSLEREQTEKILNKIMSKNNHDILNVNKAVTVHNVKKEKNRKGDKSKASSSNKLKPQ 215
            K+RKFLPVAEG G+GSLE++Q +KIL+ ++++N+ + L+V+KA+T++ VKKEK R+ +K+  S S+KLKPQ
Sbjct:  248 KHRKFLPVAEGKGMGSLEKQQNDKILSSLLARNSDEPLDVSKAITMYKVKKEKQRRKEKNMPSKSDKLKPQ 318          
BLAST of GT626836 vs. SwissProt
Match: RRS1_ARATH (Ribosome biogenesis regulatory protein homolog OS=Arabidopsis thaliana GN=At2g37990 PE=2 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 1.306e-12
Identity = 35/71 (49.30%), Postives = 50/71 (70.42%), Query Frame = 3
Query:    3 KYRKFLPVAEGTGIGSLEREQTEKILNKIMSKNNHDILNVNKAVTVHNVKKEKNRKGDKSKASSSNKLKPQ 215
            K+ K+LPV  G G  + E+EQT  +L+KI SK++H+ILNV KA+ ++NVKKEK + G       S+KLKP+
Sbjct:  242 KHHKYLPVVSGRGDVNAEKEQTNNVLSKIFSKHSHEILNVGKAINMYNVKKEKKKSG------RSDKLKPK 306          
BLAST of GT626836 vs. TAIR peptide
Match: AT2G37990.1 (| Symbols: | ribosome biogenesis regulatory protein (RRS1) family protein | chr2:15900713-15903028 FORWARD LENGTH=318)

HSP 1 Score: 72.0182 bits (175), Expect = 1.570e-13
Identity = 35/71 (49.30%), Postives = 50/71 (70.42%), Query Frame = 3
Query:    3 KYRKFLPVAEGTGIGSLEREQTEKILNKIMSKNNHDILNVNKAVTVHNVKKEKNRKGDKSKASSSNKLKPQ 215
            K+ K+LPV  G G  + E+EQT  +L+KI SK++H+ILNV KA+ ++NVKKEK + G       S+KLKP+
Sbjct:  242 KHHKYLPVVSGRGDVNAEKEQTNNVLSKIFSKHSHEILNVGKAINMYNVKKEKKKSG------RSDKLKPK 306          
The following BLAST results are available for this feature:
BLAST of GT626836 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Lens culinaris unigene v1 vs Trembl)
Total hits: 10
Match NameE-valueIdentityDescription
C6TN59_SOYBN4.171e-2376.71Putative uncharacterized protein OS=Glycine max PE... [more]
D7U817_VITVI3.904e-2169.44Whole genome shotgun sequence of line PN40024, sca... [more]
D7UCN0_VITVI2.530e-2065.28Whole genome shotgun sequence of line PN40024, sca... [more]
A5CBT4_VITVI2.530e-2065.28Putative uncharacterized protein OS=Vitis vinifera... [more]
Q7XPU3_ORYSJ5.834e-1756.34OSJNBa0088H09.13 protein OS=Oryza sativa subsp. ja... [more]
Q259U7_ORYSA5.834e-1756.34H0913C04.9 protein OS=Oryza sativa GN=H0913C04.9 P... [more]
B8ART1_ORYSI5.834e-1756.34Putative uncharacterized protein OS=Oryza sativa s... [more]
C5XMQ1_SORBI1.300e-1656.34Putative uncharacterized protein Sb03g003790 OS=So... [more]
B9H4F0_POPTR3.781e-1658.21Predicted protein (Fragment) OS=Populus trichocarp... [more]
B4FD87_MAIZE4.939e-1654.93Putative uncharacterized protein OS=Zea mays PE=2 ... [more]
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BLAST of GT626836 vs. SwissProt
Analysis Date: 2010-12-28 (Homology Analysis: Lens culinaris unigene v1 vs Swissprot)
Total hits: 1
Match NameE-valueIdentityDescription
RRS1_ARATH1.306e-1249.30Ribosome biogenesis regulatory protein homolog OS=... [more]
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BLAST of GT626836 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Lens culinaris unigene v1 vs TAIR 10 peptide)
Total hits: 1
Match NameE-valueIdentityDescription
AT2G37990.11.570e-1349.30| Symbols: | ribosome biogenesis regulatory prote... [more]
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InterPro
Analysis Name: InterProScan analysis for Lens culinaris unigene v1
Date Performed: 2011-01-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSEGsegsegcoord: 72..87
score
NoneNo IPR availableSEGsegsegcoord: 12..21
score

Properties
Property NameValue
Singlet in analysisLens culinaris unigene v1
Sequences
The following sequences are available for this feature:

EST sequence

>GT626836 ID=GT626836; Name=GT626836; organism=Lens culinaris; type=EST; length=457bp
GAAAATACCGAAAGTTCTTGCCGGTGGCAGAAGGAACAGGGATTGGATCA
CTGGAGAGGGAGCAAACTGAAAAAATATTGAACAAGATCATGTCCAAGAA
TAACCACGATATACTCAACGTTAACAAGGCTGTCACAGTGCACAATGTGA
AGAAAGAAAAAAACAGGAAGGGTGATAAATCCAAGGCTTCATCAAGCAAC
AAATTGAAACCTCAGAAGAAGTCTTTTAAAAAGGGAAATGCAAAGAAAGG
CAACCCAAAAGCACAATAATTTAGATTTTATTGAAGCTTGTAGTAGTTTT
TTGGAAACACTTAGTGGTTTAAAGTTTTGGAGACGATTATTTAGCATATC
TATTGTTATCCATATTTGCATGTCGTTTAAGCCATCCCAACATAAGATAT
TTCAAGTGATTGTTATACCAGAAGTTACTTGTATTAATAGAGTAAAACTT
ATTGTCA
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