GT626836
EST Overview
Unigenes
This EST is part of the following unigenes:
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of GT626836 vs. TrEMBL
Match: C6TN59_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1) HSP 1 Score: 110.923 bits (276), Expect = 4.171e-23 Identity = 56/73 (76.71%), Postives = 64/73 (87.67%), Query Frame = 3 Query: 3 KYRKFLPVAEGTGIGSLEREQTEKILNKIMSKNNHDILNVNKAVTVHNVKKEKNRKGDKSKASSS--NKLKPQ 215 KYRKFLPV EGTGIGSLEREQTEKILNKI+SKN+H+ILNV KAVT+HNVKKEK R+ +K KAS++ KLK Q Sbjct: 197 KYRKFLPVVEGTGIGSLEREQTEKILNKIVSKNSHNILNVEKAVTMHNVKKEKKRRSEKGKASATTDKKLKTQ 269
BLAST of GT626836 vs. TrEMBL
Match: D7U817_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_48.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00027422001 PE=4 SV=1) HSP 1 Score: 104.375 bits (259), Expect = 3.904e-21 Identity = 50/72 (69.44%), Postives = 65/72 (90.28%), Query Frame = 3 Query: 3 KYRKFLPVAEGTGIGSLEREQTEKILNKIMSKNNHDILNVNKAVTVHNVKKEKNRKGDKSK-ASSSNKLKPQ 215 KYRKFLPV EGTGIGSLE++QTEKILNK++SKN+H+ILNV+KA+ ++NVKKEK RK + K +S+S+KLKP+ Sbjct: 237 KYRKFLPVVEGTGIGSLEKQQTEKILNKLISKNSHEILNVDKAINMYNVKKEKKRKNRQGKDSSTSSKLKPK 308
BLAST of GT626836 vs. TrEMBL
Match: D7UCN0_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_46.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00027072001 PE=4 SV=1) HSP 1 Score: 101.679 bits (252), Expect = 2.530e-20 Identity = 47/72 (65.28%), Postives = 64/72 (88.89%), Query Frame = 3 Query: 3 KYRKFLPVAEGTGIGSLEREQTEKILNKIMSKNNHDILNVNKAVTVHNVKKEKNRKGDKSK-ASSSNKLKPQ 215 KYRKFLPV EGTGIGS E++QTEK+LN+++SKN+H+ILNV+KA+ ++NVKKEK RK + K +S+S+KLKP+ Sbjct: 237 KYRKFLPVVEGTGIGSQEKQQTEKVLNRLISKNSHEILNVDKAINMYNVKKEKKRKNQRGKDSSTSSKLKPK 308
BLAST of GT626836 vs. TrEMBL
Match: A5CBT4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_033191 PE=4 SV=1) HSP 1 Score: 101.679 bits (252), Expect = 2.530e-20 Identity = 47/72 (65.28%), Postives = 64/72 (88.89%), Query Frame = 3 Query: 3 KYRKFLPVAEGTGIGSLEREQTEKILNKIMSKNNHDILNVNKAVTVHNVKKEKNRKGDKSK-ASSSNKLKPQ 215 KYRKFLPV EGTGIGS E++QTEK+LN+++SKN+H+ILNV+KA+ ++NVKKEK RK + K +S+S+KLKP+ Sbjct: 236 KYRKFLPVVEGTGIGSQEKQQTEKVLNRLISKNSHEILNVDKAINMYNVKKEKKRKNQRGKDSSTSSKLKPK 307
BLAST of GT626836 vs. TrEMBL
Match: Q7XPU3_ORYSJ (OSJNBa0088H09.13 protein OS=Oryza sativa subsp. japonica GN=OSJNBa0088H09.13 PE=4 SV=1) HSP 1 Score: 90.5077 bits (223), Expect = 5.834e-17 Identity = 40/71 (56.34%), Postives = 59/71 (83.10%), Query Frame = 3 Query: 3 KYRKFLPVAEGTGIGSLEREQTEKILNKIMSKNNHDILNVNKAVTVHNVKKEKNRKGDKSKASSSNKLKPQ 215 K+RKFLPV EG G+G+ E++Q +KILN +++K++ D ++V +A+T++ VKKEK R+ DK K+SSSNKLKPQ Sbjct: 248 KHRKFLPVVEGKGMGNQEKQQNDKILNALLAKSSEDQMDVGRAITMYKVKKEKQRRKDKEKSSSSNKLKPQ 318
BLAST of GT626836 vs. TrEMBL
Match: Q259U7_ORYSA (H0913C04.9 protein OS=Oryza sativa GN=H0913C04.9 PE=4 SV=1) HSP 1 Score: 90.5077 bits (223), Expect = 5.834e-17 Identity = 40/71 (56.34%), Postives = 59/71 (83.10%), Query Frame = 3 Query: 3 KYRKFLPVAEGTGIGSLEREQTEKILNKIMSKNNHDILNVNKAVTVHNVKKEKNRKGDKSKASSSNKLKPQ 215 K+RKFLPV EG G+G+ E++Q +KILN +++K++ D ++V +A+T++ VKKEK R+ DK K+SSSNKLKPQ Sbjct: 250 KHRKFLPVVEGKGMGNQEKQQNDKILNALLAKSSEDQMDVGRAITMYKVKKEKQRRKDKEKSSSSNKLKPQ 320
BLAST of GT626836 vs. TrEMBL
Match: B8ART1_ORYSI (Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_17991 PE=4 SV=1) HSP 1 Score: 90.5077 bits (223), Expect = 5.834e-17 Identity = 40/71 (56.34%), Postives = 59/71 (83.10%), Query Frame = 3 Query: 3 KYRKFLPVAEGTGIGSLEREQTEKILNKIMSKNNHDILNVNKAVTVHNVKKEKNRKGDKSKASSSNKLKPQ 215 K+RKFLPV EG G+G+ E++Q +KILN +++K++ D ++V +A+T++ VKKEK R+ DK K+SSSNKLKPQ Sbjct: 209 KHRKFLPVVEGKGMGNQEKQQNDKILNALLAKSSEDQMDVGRAITMYKVKKEKQRRKDKEKSSSSNKLKPQ 279
BLAST of GT626836 vs. TrEMBL
Match: C5XMQ1_SORBI (Putative uncharacterized protein Sb03g003790 OS=Sorghum bicolor GN=Sb03g003790 PE=4 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 1.300e-16 Identity = 40/71 (56.34%), Postives = 59/71 (83.10%), Query Frame = 3 Query: 3 KYRKFLPVAEGTGIGSLEREQTEKILNKIMSKNNHDILNVNKAVTVHNVKKEKNRKGDKSKASSSNKLKPQ 215 K+RKFLPVAEG G+GSLE++Q +KILN ++++N+ + L+V KA+T++ VKKEK R+ +K +S S+KLKPQ Sbjct: 248 KHRKFLPVAEGKGMGSLEKQQNDKILNSLLARNSDEPLDVGKAITMYKVKKEKQRRKEKDMSSKSDKLKPQ 318
BLAST of GT626836 vs. TrEMBL
Match: B9H4F0_POPTR (Predicted protein (Fragment) OS=Populus trichocarpa GN=POPTRDRAFT_206051 PE=4 SV=1) HSP 1 Score: 87.8113 bits (216), Expect = 3.781e-16 Identity = 39/67 (58.21%), Postives = 56/67 (83.58%), Query Frame = 3 Query: 3 KYRKFLPVAEGTGIGSLEREQTEKILNKIMSKNNHDILNVNKAVTVHNVKKEKNRKGDKSKASSSNK 203 K+RKFLPV EG+GIGS E+EQT+++L+K++S N+H+ILNV+KAVT++NV KE+ R+ K SS+ K Sbjct: 232 KHRKFLPVVEGSGIGSQEKEQTDRVLSKLISSNSHEILNVDKAVTMYNVNKERKRRNQYGKPSSTRK 298
BLAST of GT626836 vs. TrEMBL
Match: B4FD87_MAIZE (Putative uncharacterized protein OS=Zea mays PE=2 SV=1) HSP 1 Score: 87.4261 bits (215), Expect = 4.939e-16 Identity = 39/71 (54.93%), Postives = 60/71 (84.51%), Query Frame = 3 Query: 3 KYRKFLPVAEGTGIGSLEREQTEKILNKIMSKNNHDILNVNKAVTVHNVKKEKNRKGDKSKASSSNKLKPQ 215 K+RKFLPVAEG G+GSLE++Q +KIL+ ++++N+ + L+V+KA+T++ VKKEK R+ +K+ S S+KLKPQ Sbjct: 248 KHRKFLPVAEGKGMGSLEKQQNDKILSSLLARNSDEPLDVSKAITMYKVKKEKQRRKEKNMPSKSDKLKPQ 318
BLAST of GT626836 vs. SwissProt
Match: RRS1_ARATH (Ribosome biogenesis regulatory protein homolog OS=Arabidopsis thaliana GN=At2g37990 PE=2 SV=2) HSP 1 Score: 72.0182 bits (175), Expect = 1.306e-12 Identity = 35/71 (49.30%), Postives = 50/71 (70.42%), Query Frame = 3 Query: 3 KYRKFLPVAEGTGIGSLEREQTEKILNKIMSKNNHDILNVNKAVTVHNVKKEKNRKGDKSKASSSNKLKPQ 215 K+ K+LPV G G + E+EQT +L+KI SK++H+ILNV KA+ ++NVKKEK + G S+KLKP+ Sbjct: 242 KHHKYLPVVSGRGDVNAEKEQTNNVLSKIFSKHSHEILNVGKAINMYNVKKEKKKSG------RSDKLKPK 306
BLAST of GT626836 vs. TAIR peptide
Match: AT2G37990.1 (| Symbols: | ribosome biogenesis regulatory protein (RRS1) family protein | chr2:15900713-15903028 FORWARD LENGTH=318) HSP 1 Score: 72.0182 bits (175), Expect = 1.570e-13 Identity = 35/71 (49.30%), Postives = 50/71 (70.42%), Query Frame = 3 Query: 3 KYRKFLPVAEGTGIGSLEREQTEKILNKIMSKNNHDILNVNKAVTVHNVKKEKNRKGDKSKASSSNKLKPQ 215 K+ K+LPV G G + E+EQT +L+KI SK++H+ILNV KA+ ++NVKKEK + G S+KLKP+ Sbjct: 242 KHHKYLPVVSGRGDVNAEKEQTNNVLSKIFSKHSHEILNVGKAINMYNVKKEKKKSG------RSDKLKPK 306 The following BLAST results are available for this feature:
BLAST of GT626836 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Lens culinaris unigene v1 vs Trembl) Total hits: 10
BLAST of GT626836 vs. SwissProt
Analysis Date: 2010-12-28 (Homology Analysis: Lens culinaris unigene v1 vs Swissprot) Total hits: 1
BLAST of GT626836 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Lens culinaris unigene v1 vs TAIR 10 peptide) Total hits: 1
InterPro
Analysis Name: InterProScan analysis for Lens culinaris unigene v1
Date Performed: 2011-01-06
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >GT626836 ID=GT626836; Name=GT626836; organism=Lens culinaris; type=EST; length=457bpback to top |