GT624493

EST Overview
NameGT624493
Unique NameGT624493
TypeEST
OrganismLens culinaris (lentil)
Sequence length500
Unigenes
This EST is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Lens culinaris unigene v1Lens culinaris unigene v1EST
Libraries
Library NameType
LIBEST_025390 LCUSE1NGcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
Lens culinaris unigene v12010-12-27
Homology Analysis: Lens culinaris unigene v1 vs Trembl2010-12-28
Homology Analysis: Lens culinaris unigene v1 vs TAIR 10 peptide2011-02-03
Homology
BLAST of GT624493 vs. TrEMBL
Match: D7UCV2_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_46.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00027169001 PE=4 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.668e-19
Identity = 49/63 (77.78%), Postives = 56/63 (88.89%), Query Frame = 2
Query:   11 MPVMEKLKMFVVQEPVVAASCLIAGFGLFLPAVVRPILDSYQTTEQPPQLALSDVVKGMSGQK 199
            MPV+EKLKM +VQEPVVAASC IAG GLFLPAVVRPILDS +T++Q PQ ALSDVV GM+G+K
Sbjct:    1 MPVVEKLKMLIVQEPVVAASCFIAGVGLFLPAVVRPILDSLETSKQVPQPALSDVVAGMTGKK 63          
BLAST of GT624493 vs. TrEMBL
Match: B4FKL9_MAIZE (Fiber protein Fb11 OS=Zea mays PE=4 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 3.716e-19
Identity = 49/63 (77.78%), Postives = 56/63 (88.89%), Query Frame = 2
Query:   11 MPVMEKLKMFVVQEPVVAASCLIAGFGLFLPAVVRPILDSYQTTEQPPQLALSDVVKGMSGQK 199
            M VMEKLK+FVV+EPVVAASCLIAGFGLFLPAVVRPILDS+QT EQ P   L+DVV G++G+K
Sbjct:    1 MAVMEKLKIFVVKEPVVAASCLIAGFGLFLPAVVRPILDSWQTAEQVPPPLLNDVVAGVTGKK 63          
BLAST of GT624493 vs. TrEMBL
Match: Q8GT82_GOSBA (Fiber protein Fb11 OS=Gossypium barbadense PE=4 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 8.279e-19
Identity = 48/63 (76.19%), Postives = 57/63 (90.48%), Query Frame = 2
Query:   11 MPVMEKLKMFVVQEPVVAASCLIAGFGLFLPAVVRPILDSYQTTEQPPQLALSDVVKGMSGQK 199
            M VM+KLK+FVVQEPVVAASCLIAGFGLFLPAVVRPILDS ++++Q PQ AL DVV G++G+K
Sbjct:    1 MAVMQKLKIFVVQEPVVAASCLIAGFGLFLPAVVRPILDSLESSKQVPQPALRDVVAGVTGKK 63          
BLAST of GT624493 vs. TrEMBL
Match: C5YUV8_SORBI (Putative uncharacterized protein Sb09g027070 OS=Sorghum bicolor GN=Sb09g027070 PE=4 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.409e-18
Identity = 47/63 (74.60%), Postives = 56/63 (88.89%), Query Frame = 2
Query:   11 MPVMEKLKMFVVQEPVVAASCLIAGFGLFLPAVVRPILDSYQTTEQPPQLALSDVVKGMSGQK 199
            M VMEKLK+FVV+EPVVAASCLIAGFGLFLPAVVRPILDS++T E+ P   L+DVV G++G+K
Sbjct:    1 MAVMEKLKIFVVKEPVVAASCLIAGFGLFLPAVVRPILDSWETAEKVPPPPLNDVVAGVTGKK 63          
BLAST of GT624493 vs. TrEMBL
Match: B6SNA3_MAIZE (Fiber protein Fb11 OS=Zea mays PE=4 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.409e-18
Identity = 47/63 (74.60%), Postives = 56/63 (88.89%), Query Frame = 2
Query:   11 MPVMEKLKMFVVQEPVVAASCLIAGFGLFLPAVVRPILDSYQTTEQPPQLALSDVVKGMSGQK 199
            M VMEKLK+FVV+EPVVAASCLIAGFGLFLPAVVRPILDS++T E+ P   L+DVV G++G+K
Sbjct:    1 MAVMEKLKIFVVKEPVVAASCLIAGFGLFLPAVVRPILDSWETAEKVPPPPLNDVVAGVTGKK 63          
BLAST of GT624493 vs. TrEMBL
Match: Q5TKP1_ORYSJ (Os05g0542100 protein OS=Oryza sativa subsp. japonica GN=OJ1362_G11.16 PE=4 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.561e-17
Identity = 45/63 (71.43%), Postives = 55/63 (87.30%), Query Frame = 2
Query:   11 MPVMEKLKMFVVQEPVVAASCLIAGFGLFLPAVVRPILDSYQTTEQPPQLALSDVVKGMSGQK 199
            M VMEKLK+F V+EPVV ASCLIAGFGLFLPAVVRP+LDS++T +Q P  AL+DVV G++G+K
Sbjct:    1 MGVMEKLKIFAVKEPVVTASCLIAGFGLFLPAVVRPMLDSWETAKQVPPPALNDVVAGVTGKK 63          
BLAST of GT624493 vs. TrEMBL
Match: B8AW76_ORYSI (Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_20832 PE=4 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.561e-17
Identity = 45/63 (71.43%), Postives = 55/63 (87.30%), Query Frame = 2
Query:   11 MPVMEKLKMFVVQEPVVAASCLIAGFGLFLPAVVRPILDSYQTTEQPPQLALSDVVKGMSGQK 199
            M VMEKLK+F V+EPVV ASCLIAGFGLFLPAVVRP+LDS++T +Q P  AL+DVV G++G+K
Sbjct:    1 MGVMEKLKIFAVKEPVVTASCLIAGFGLFLPAVVRPMLDSWETAKQVPPPALNDVVAGVTGKK 63          
BLAST of GT624493 vs. TrEMBL
Match: B9SBF4_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0716940 PE=4 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 3.478e-17
Identity = 46/55 (83.64%), Postives = 51/55 (92.73%), Query Frame = 2
Query:   11 MPVMEKLKMFVVQEPVVAASCLIAGFGLFLPAVVRPILDSYQTTEQPPQLALSDV 175
            M VMEKLK+FVVQEPVVAASCLIAG GLFLPAVVRPILDS++T++Q PQ ALSDV
Sbjct:    1 MAVMEKLKIFVVQEPVVAASCLIAGVGLFLPAVVRPILDSFETSKQVPQPALSDV 55          
BLAST of GT624493 vs. TrEMBL
Match: B6U718_MAIZE (Fiber protein Fb11 OS=Zea mays PE=4 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.726e-16
Identity = 45/55 (81.82%), Postives = 49/55 (89.09%), Query Frame = 2
Query:   11 MPVMEKLKMFVVQEPVVAASCLIAGFGLFLPAVVRPILDSYQTTEQPPQLALSDV 175
            M VMEKLK+FVV+EPVVAASCLIAGFGLFLPAVVRPILDS+QT EQ P   L+DV
Sbjct:    1 MAVMEKLKIFVVKEPVVAASCLIAGFGLFLPAVVRPILDSWQTAEQVPPPLLNDV 55          
BLAST of GT624493 vs. TrEMBL
Match: A9PAD2_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_644598 PE=4 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.255e-16
Identity = 45/65 (69.23%), Postives = 55/65 (84.62%), Query Frame = 2
Query:   11 MPVMEKLKMFVVQEPVVAASCLIAGFGLFLPAVVRPILDSYQTTEQPP--QLALSDVVKGMSGQK 199
            MPVMEKL+MFV QEPVVAASCLIAG GLFLPAVVRPILDS + ++  P  Q ++SDV+ GM+G++
Sbjct:    1 MPVMEKLRMFVAQEPVVAASCLIAGIGLFLPAVVRPILDSLEGSKHVPEKQPSISDVLAGMTGKR 65          
BLAST of GT624493 vs. TAIR peptide
Match: AT2G46540.1 (| Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 16 growth stages; Has 42 Blast hits to 42 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:19110687-19111681 REVERSE LENGTH=65)

HSP 1 Score: 88.1965 bits (217), Expect = 2.560e-18
Identity = 43/63 (68.25%), Postives = 52/63 (82.54%), Query Frame = 2
Query:   11 MPVMEKLKMFVVQEPVVAASCLIAGFGLFLPAVVRPILDSYQTTEQPPQLALSDVVKGMSGQK 199
            MPVMEKL+MFV QEPVVAASCLI G GLFLPAVVRPILDS + ++Q     L+DV+ G++G+K
Sbjct:    1 MPVMEKLRMFVAQEPVVAASCLIGGVGLFLPAVVRPILDSLEASKQVKAPPLTDVIAGVTGKK 63          
The following BLAST results are available for this feature:
BLAST of GT624493 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Lens culinaris unigene v1 vs Trembl)
Total hits: 10
Match NameE-valueIdentityDescription
D7UCV2_VITVI1.668e-1977.78Whole genome shotgun sequence of line PN40024, sca... [more]
B4FKL9_MAIZE3.716e-1977.78Fiber protein Fb11 OS=Zea mays PE=4 SV=1[more]
Q8GT82_GOSBA8.279e-1976.19Fiber protein Fb11 OS=Gossypium barbadense PE=4 SV... [more]
C5YUV8_SORBI2.409e-1874.60Putative uncharacterized protein Sb09g027070 OS=So... [more]
B6SNA3_MAIZE2.409e-1874.60Fiber protein Fb11 OS=Zea mays PE=4 SV=1[more]
Q5TKP1_ORYSJ1.561e-1771.43Os05g0542100 protein OS=Oryza sativa subsp. japoni... [more]
B8AW76_ORYSI1.561e-1771.43Putative uncharacterized protein OS=Oryza sativa s... [more]
B9SBF4_RICCO3.478e-1783.64Putative uncharacterized protein OS=Ricinus commun... [more]
B6U718_MAIZE1.726e-1681.82Fiber protein Fb11 OS=Zea mays PE=4 SV=1[more]
A9PAD2_POPTR2.255e-1669.23Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]
back to top
BLAST of GT624493 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Lens culinaris unigene v1 vs TAIR 10 peptide)
Total hits: 1
Match NameE-valueIdentityDescription
AT2G46540.12.560e-1868.25| Symbols: | unknown protein; FUNCTIONS IN: molec... [more]
back to top
Properties
Property NameValue
Singlet in analysisLens culinaris unigene v1
Sequences
The following sequences are available for this feature:

EST sequence

>GT624493 ID=GT624493; Name=GT624493; organism=Lens culinaris; type=EST; length=500bp
GAAAATCAAAATGCCTGTAATGGAGAAGCTCAAGATGTTCGTTGTTCAAG
AACCAGTTGTCGCTGCTTCATGTCTCATCGCCGGCTTTGGCCTTTTTCTT
CCTGCTGTTGTGAGGCCTATTCTGGACTCATATCAAACAACCGAGCAACC
TCCTCAACTTGCTTTGAGTGACGTGGTTAAAGGTATGTCAGGTCAAAAGT
AAGCTGATTTACTTGAGATACAAGTGGATAATTGCCAACTTCGCTGCTTG
AACTTTTTTTCTTTTCATTCTGTGAGTAATAAAAGTACCTAGTTACAAAA
CATTTGATTGAGCATCAATTTGTTACAATCTATCAGTTCCAAATTCACCC
AGAGGCTTCATTTCATATTTATTTAGGTTAAGTGTTTGGTTGAATGTCAA
GTATATTCTGTTGCCTTGTTGATTTTGTCTCTAATATCAAATGCACTTTC
TGAATTGTTCCTCTAGTGACAATATAAAGGAGTTTTGTTAAGCTGACTTG
back to top