GT624523

EST Overview
NameGT624523
Unique NameGT624523
TypeEST
OrganismLens culinaris (lentil)
Sequence length588
Unigenes
This EST is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Lens culinaris unigene v1Lens culinaris unigene v1EST
Libraries
Library NameType
LIBEST_025390 LCUSE1NGcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
Lens culinaris unigene v12010-12-27
Homology Analysis: Lens culinaris unigene v1 vs Trembl2010-12-28
Homology Analysis: Lens culinaris unigene v1 vs TAIR 10 peptide2011-02-03
InterProScan analysis for Lens culinaris unigene v12011-01-06
Homology
BLAST of GT624523 vs. TrEMBL
Match: Q2HTW0_MEDTR (Homeodomain-related OS=Medicago truncatula GN=MtrDRAFT_AC149601g17v2 PE=4 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.464e-19
Identity = 48/50 (96.00%), Postives = 49/50 (98.00%), Query Frame = -1
Query:  262 APNNKIQGTFLKKDDPKINALMQQAELLTSLALKVDAENMDQSLENAWKV 411
            A NNKIQGTFLKKDDPKINALMQQAELLTSLALKVDAENMDQSLENAWK+
Sbjct:  221 AQNNKIQGTFLKKDDPKINALMQQAELLTSLALKVDAENMDQSLENAWKI 270          
BLAST of GT624523 vs. TrEMBL
Match: D7TNB9_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_26.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00020038001 PE=4 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.588e-16
Identity = 45/51 (88.24%), Postives = 47/51 (92.16%), Query Frame = -1
Query:  253 NNKIQGTFLKKDDPKINALMQQAELLTSLALKVDAENMDQSLENAWKVRLD 405
            NNKIQGTFLKKDDPKI ALMQQAELL+SLALKV+AEN DQSLENAWKV  D
Sbjct:  229 NNKIQGTFLKKDDPKITALMQQAELLSSLALKVNAENTDQSLENAWKVFQD 279          
BLAST of GT624523 vs. TrEMBL
Match: B9S295_RICCO (Myb124, putative OS=Ricinus communis GN=RCOM_0697470 PE=4 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.486e-14
Identity = 41/53 (77.36%), Postives = 46/53 (86.79%), Query Frame = -1
Query:  253 APNNKIQGTFLKKDDPKINALMQQAELLTSLALKVDAENMDQSLENAWKVRLD 411
            A N+KI+ TFL+KDDPKI ALMQQAELL+SLALKV+ EN DQSLENAWKV  D
Sbjct:  224 AENSKIEATFLRKDDPKITALMQQAELLSSLALKVNTENTDQSLENAWKVLQD 276          
BLAST of GT624523 vs. TrEMBL
Match: B9HJT7_POPTR (Predicted protein OS=Populus trichocarpa GN=MYB213 PE=4 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.941e-14
Identity = 41/51 (80.39%), Postives = 45/51 (88.24%), Query Frame = -1
Query:  253 NNKIQGTFLKKDDPKINALMQQAELLTSLALKVDAENMDQSLENAWKVRLD 405
            +++IQGTFLKKDDPKI ALMQQAELL+SLALKV  EN DQSLENAWKV  D
Sbjct:  215 SSRIQGTFLKKDDPKITALMQQAELLSSLALKVSEENTDQSLENAWKVLQD 265          
BLAST of GT624523 vs. TrEMBL
Match: B9HV98_POPTR (Predicted protein OS=Populus trichocarpa GN=MYB196 PE=4 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.146e-13
Identity = 40/51 (78.43%), Postives = 43/51 (84.31%), Query Frame = -1
Query:  253 NNKIQGTFLKKDDPKINALMQQAELLTSLALKVDAENMDQSLENAWKVRLD 405
            N+ IQ TFLKKDDPKI ALMQQAELL+SLALKV  EN DQSLEN+WKV  D
Sbjct:  231 NSMIQRTFLKKDDPKITALMQQAELLSSLALKVSEENTDQSLENSWKVLQD 281          
BLAST of GT624523 vs. TrEMBL
Match: Q6L4J6_SOLDE (Putative Myb-like DNA-binding protein OS=Solanum demissum GN=PGEC219.3 PE=4 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.803e-13
Identity = 39/56 (69.64%), Postives = 46/56 (82.14%), Query Frame = -1
Query:  244 APNNKIQGTFLKKDDPKINALMQQAELLTSLALKVDAENMDQSLENAWKVRLDSSQ 411
            A +NK QGTFLK+DDPK  ALMQQAELL+SLA+KV+ EN DQSLE+AWK+  D  Q
Sbjct:  230 ASDNKTQGTFLKQDDPKKQALMQQAELLSSLAMKVNTENTDQSLESAWKILQDFLQ 285          
BLAST of GT624523 vs. TrEMBL
Match: Q5MG98_IPOBA (Putative Myb-like DNA-binding protein OS=Ipomoea batatas PE=4 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.154e-13
Identity = 40/51 (78.43%), Postives = 45/51 (88.24%), Query Frame = -1
Query:  253 NNKIQGTFLKKDDPKINALMQQAELLTSLALKVDAENMDQSLENAWKVRLD 405
            +NK +GTFLKKDDPKI ALMQQAELL+SLALKV++EN DQSLENA KV  D
Sbjct:  150 SNKTEGTFLKKDDPKILALMQQAELLSSLALKVNSENTDQSLENACKVLED 200          
BLAST of GT624523 vs. TrEMBL
Match: Q6L431_SOLDE (Myb-like DNA-binding protein, putative OS=Solanum demissum GN=SDM1_26t00007 PE=4 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 1.065e-12
Identity = 37/51 (72.55%), Postives = 44/51 (86.27%), Query Frame = -1
Query:  259 APNNKIQGTFLKKDDPKINALMQQAELLTSLALKVDAENMDQSLENAWKVR 411
            A +NK QGTFLK+DDPK  ALMQQAELL+SLA+KV+ EN DQSLE+AWK +
Sbjct:  241 ASDNKTQGTFLKQDDPKKQALMQQAELLSSLAMKVNTENTDQSLESAWKFK 291          
BLAST of GT624523 vs. TrEMBL
Match: Q9M9S7_ARATH (F14L17.12 protein OS=Arabidopsis thaliana GN=F14L17.12 PE=4 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.623e-11
Identity = 34/47 (72.34%), Postives = 41/47 (87.23%), Query Frame = -1
Query:  253 QGTFLKKDDPKINALMQQAELLTSLALKVDAENMDQSLENAWKVRLD 393
            +G FLKKDDPK+ ALMQQAELL+SLA KV+A+N +QS+ENAWKV  D
Sbjct:  221 EGMFLKKDDPKVTALMQQAELLSSLAQKVNADNTEQSMENAWKVLQD 267          
BLAST of GT624523 vs. TrEMBL
Match: Q94FL6_ARATH (At1g14350 OS=Arabidopsis thaliana GN=MYB124 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.623e-11
Identity = 34/47 (72.34%), Postives = 41/47 (87.23%), Query Frame = -1
Query:  253 QGTFLKKDDPKINALMQQAELLTSLALKVDAENMDQSLENAWKVRLD 393
            +G FLKKDDPK+ ALMQQAELL+SLA KV+A+N +QS+ENAWKV  D
Sbjct:  221 EGMFLKKDDPKVTALMQQAELLSSLAQKVNADNTEQSMENAWKVLQD 267          
BLAST of GT624523 vs. TAIR peptide
Match: AT1G14350.2 (| Symbols: FLP, MYB124 | Duplicated homeodomain-like superfamily protein | chr1:4908427-4910647 FORWARD LENGTH=436)

HSP 1 Score: 72.4034 bits (176), Expect = 1.998e-13
Identity = 34/47 (72.34%), Postives = 41/47 (87.23%), Query Frame = -1
Query:  253 QGTFLKKDDPKINALMQQAELLTSLALKVDAENMDQSLENAWKVRLD 393
            +G FLKKDDPK+ ALMQQAELL+SLA KV+A+N +QS+ENAWKV  D
Sbjct:  221 EGMFLKKDDPKVTALMQQAELLSSLAQKVNADNTEQSMENAWKVLQD 267          
BLAST of GT624523 vs. TAIR peptide
Match: AT1G14350.1 (| Symbols: FLP, AtMYB124, MYB124 | Duplicated homeodomain-like superfamily protein | chr1:4908427-4910647 FORWARD LENGTH=436)

HSP 1 Score: 72.4034 bits (176), Expect = 1.998e-13
Identity = 34/47 (72.34%), Postives = 41/47 (87.23%), Query Frame = -1
Query:  253 QGTFLKKDDPKINALMQQAELLTSLALKVDAENMDQSLENAWKVRLD 393
            +G FLKKDDPK+ ALMQQAELL+SLA KV+A+N +QS+ENAWKV  D
Sbjct:  221 EGMFLKKDDPKVTALMQQAELLSSLAQKVNADNTEQSMENAWKVLQD 267          
BLAST of GT624523 vs. TAIR peptide
Match: AT2G02820.2 (| Symbols: MYB88 | myb domain protein 88 | chr2:804716-807139 REVERSE LENGTH=484)

HSP 1 Score: 69.3218 bits (168), Expect = 1.692e-12
Identity = 34/47 (72.34%), Postives = 39/47 (82.98%), Query Frame = -1
Query:  253 QGTFLKKDDPKINALMQQAELLTSLALKVDAENMDQSLENAWKVRLD 393
            Q  FLKKDD K+ ALMQQAELL+SLA KV+A+N DQS+ENAWKV  D
Sbjct:  242 QEVFLKKDDSKVTALMQQAELLSSLAQKVNADNTDQSMENAWKVLQD 288          
BLAST of GT624523 vs. TAIR peptide
Match: AT2G02820.1 (| Symbols: MYB88, AtMYB88 | myb domain protein 88 | chr2:804890-807139 REVERSE LENGTH=455)

HSP 1 Score: 69.3218 bits (168), Expect = 1.692e-12
Identity = 34/47 (72.34%), Postives = 39/47 (82.98%), Query Frame = -1
Query:  253 QGTFLKKDDPKINALMQQAELLTSLALKVDAENMDQSLENAWKVRLD 393
            Q  FLKKDD K+ ALMQQAELL+SLA KV+A+N DQS+ENAWKV  D
Sbjct:  242 QEVFLKKDDSKVTALMQQAELLSSLAQKVNADNTDQSMENAWKVLQD 288          
The following BLAST results are available for this feature:
BLAST of GT624523 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Lens culinaris unigene v1 vs Trembl)
Total hits: 10
Match NameE-valueIdentityDescription
Q2HTW0_MEDTR4.464e-1996.00Homeodomain-related OS=Medicago truncatula GN=MtrD... [more]
D7TNB9_VITVI1.588e-1688.24Whole genome shotgun sequence of line PN40024, sca... [more]
B9S295_RICCO1.486e-1477.36Myb124, putative OS=Ricinus communis GN=RCOM_06974... [more]
B9HJT7_POPTR1.941e-1480.39Predicted protein OS=Populus trichocarpa GN=MYB213... [more]
B9HV98_POPTR2.146e-1378.43Predicted protein OS=Populus trichocarpa GN=MYB196... [more]
Q6L4J6_SOLDE2.803e-1369.64Putative Myb-like DNA-binding protein OS=Solanum d... [more]
Q5MG98_IPOBA8.154e-1378.43Putative Myb-like DNA-binding protein OS=Ipomoea b... [more]
Q6L431_SOLDE1.065e-1272.55Myb-like DNA-binding protein, putative OS=Solanum ... [more]
Q9M9S7_ARATH2.623e-1172.34F14L17.12 protein OS=Arabidopsis thaliana GN=F14L1... [more]
Q94FL6_ARATH2.623e-1172.34At1g14350 OS=Arabidopsis thaliana GN=MYB124 PE=2 S... [more]
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BLAST of GT624523 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Lens culinaris unigene v1 vs TAIR 10 peptide)
Total hits: 4
Match NameE-valueIdentityDescription
AT1G14350.21.998e-1372.34| Symbols: FLP, MYB124 | Duplicated homeodomain-li... [more]
AT1G14350.11.998e-1372.34| Symbols: FLP, AtMYB124, MYB124 | Duplicated home... [more]
AT2G02820.21.692e-1272.34| Symbols: MYB88 | myb domain protein 88 | chr2:80... [more]
AT2G02820.11.692e-1272.34| Symbols: MYB88, AtMYB88 | myb domain protein 88 ... [more]
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InterPro
Analysis Name: InterProScan analysis for Lens culinaris unigene v1
Date Performed: 2011-01-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSEGsegsegcoord: 26..39
score

Properties
Property NameValue
Singlet in analysisLens culinaris unigene v1
Sequences
The following sequences are available for this feature:

EST sequence

>GT624523 ID=GT624523; Name=GT624523; organism=Lens culinaris; type=EST; length=588bp
GATAGCAAGGCGATCTATGAGCCATTATAAGTTTGAAATAGTTTCATGAT
ATGTTGAATATTTTCATGATTCTCAAACAGATTGGTTTTAAACATTAAAA
GTTGATTTCATTTTTTTTGGCGTTGAACTTACTTCTTGACATATATTGCA
TACTATGGTTTTTTGTTTTCGAATGCATCAACACGATCGGAGTTCAATTT
GAAAGAAGACCATGTGATGTTTGAAAATCAAAGCGAGAGCAAGTTGGGAA
CTATCAAGCCTCACCTTCCATGCATTTTCAAGACTTTGGTCCATGTTCTC
TGCATCAACTTTTAGAGCTAATGATGTTAGAAGCTCAGCTTGTTGCATCA
ATGCGTTTATCTTTGGATCATCCTTTTTAAGGAATGTTCCTTGAATCTTG
TTGTTTGGAGCTACAAAAGAATGAAAAATCGAGAGTTACATTATAATGGT
GATAGAATGGCCAAAGTTAATTCTGGCTTAATAAATTAGGCTATATTTGG
TTTATTTCCTGAATGTCTGAAGTGTTATTACAATAGTTCCTGAATGTATC
AAAATTACAAAAATATATCTAATGCGCCTTTTGTTAGT
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