GT623316

EST Overview


Name	GT623316
Unique Name	GT623316
Type	EST
Organism	Lens culinaris (lentil)
Sequence length	718

Unigenes

This EST is part of the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
Lens culinaris unigene v1	Lens culinaris unigene v1	EST

Libraries


Library Name	Type
LIBEST_025390 LCUSE1NG	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
Lens culinaris unigene v1	2010-12-27
Homology Analysis: Lens culinaris unigene v1 vs Trembl	2010-12-28
Homology Analysis: Lens culinaris unigene v1 vs TAIR 10 peptide	2011-02-03
InterProScan analysis for Lens culinaris unigene v1	2011-01-06

Homology

[Close]

BLAST of GT623316 vs. TrEMBL
Match: A5BWS3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_006539 PE=4 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 2.320e-33
Identity = 57/69 (82.61%), Postives = 62/69 (89.86%), Query Frame = 2

Query:  185 QVIMFLSRSDEEINLNRKLAKDLVDKWSRPIFNKSTRFEDMRNIEDDRAPYRRPSVKKPANKAAGMESR 391
            +VIMFLS+SDEE   NRKLAKDLVDKWSRPIFNKSTRFEDMRN +D+R P+RRPS KKP NKAAGMESR
Sbjct:  346 KVIMFLSKSDEETTANRKLAKDLVDKWSRPIFNKSTRFEDMRNFDDERVPFRRPSAKKPMNKAAGMESR 414

HSP 2 Score: 46.2098 bits (108), Expect = 2.320e-33
Identity = 20/25 (80.00%), Postives = 24/25 (96.00%), Query Frame = 1

Query:    1 VSQFPIDLEQFDRREQLKRSGLGKV 75
            ++ FPIDLEQ+DRREQLK+SGLGKV
Sbjct:  323 LTDFPIDLEQYDRREQLKKSGLGKV 347

HSP 3 Score: 106.301 bits (264), Expect = 2.567e-21
Identity = 52/65 (80.00%), Postives = 58/65 (89.23%), Query Frame = 3

Query:  522 RAGQSSSRQLTSRPEATPLDFVIRPQSKIDPDEIRARAKQGSQDQHRMKMNKKLQQLRAPKKKQL 716
            ++GQSSSR   SRPEA PLDF++RPQSKIDPDEIRARAKQ  QDQ R+KMNKKLQQL+APKKKQL
Sbjct:  428 KSGQSSSRLHASRPEAMPLDFIVRPQSKIDPDEIRARAKQVVQDQRRLKMNKKLQQLKAPKKKQL 492

[Close]

BLAST of GT623316 vs. TrEMBL
Match: D7TPD7_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_104.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00011111001 PE=4 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 2.320e-33
Identity = 57/69 (82.61%), Postives = 62/69 (89.86%), Query Frame = 2

Query:  185 QVIMFLSRSDEEINLNRKLAKDLVDKWSRPIFNKSTRFEDMRNIEDDRAPYRRPSVKKPANKAAGMESR 391
            +VIMFLS+SDEE   NRKLAKDLVDKWSRPIFNKSTRFEDMRN +D+R P+RRPS KKP NKAAGMESR
Sbjct:  345 KVIMFLSKSDEETTANRKLAKDLVDKWSRPIFNKSTRFEDMRNFDDERVPFRRPSAKKPMNKAAGMESR 413

HSP 2 Score: 46.2098 bits (108), Expect = 2.320e-33
Identity = 20/25 (80.00%), Postives = 24/25 (96.00%), Query Frame = 1

Query:    1 VSQFPIDLEQFDRREQLKRSGLGKV 75
            ++ FPIDLEQ+DRREQLK+SGLGKV
Sbjct:  322 LTDFPIDLEQYDRREQLKKSGLGKV 346

HSP 3 Score: 106.301 bits (264), Expect = 2.567e-21
Identity = 52/65 (80.00%), Postives = 58/65 (89.23%), Query Frame = 3

Query:  522 RAGQSSSRQLTSRPEATPLDFVIRPQSKIDPDEIRARAKQGSQDQHRMKMNKKLQQLRAPKKKQL 716
            ++GQSSSR   SRPEA PLDF++RPQSKIDPDEIRARAKQ  QDQ R+KMNKKLQQL+APKKKQL
Sbjct:  427 KSGQSSSRLHASRPEAMPLDFIVRPQSKIDPDEIRARAKQVVQDQRRLKMNKKLQQLKAPKKKQL 491

[Close]

BLAST of GT623316 vs. TrEMBL
Match: D7KHG1_ARALY (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_473395 PE=4 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.590e-31
Identity = 56/69 (81.16%), Postives = 63/69 (91.30%), Query Frame = 2

Query:  185 QVIMFLSRSDEEINLNRKLAKDLVDKWSRPIFNKSTRFEDMRNIEDDRAPYRRPSVKKPANKAAGMESR 391
            +VIMFLS+SDEE N NR+LAKDLVDKWSRPIFNKSTRFEDMRN+++DR PYRRP VKKP+NKA  MESR
Sbjct:  338 KVIMFLSKSDEETNSNRRLAKDLVDKWSRPIFNKSTRFEDMRNLDEDRVPYRRPPVKKPSNKAT-MESR 405

HSP 2 Score: 45.0542 bits (105), Expect = 1.590e-31
Identity = 19/25 (76.00%), Postives = 24/25 (96.00%), Query Frame = 1

Query:    1 VSQFPIDLEQFDRREQLKRSGLGKV 75
            ++ FPIDL+Q+DRREQLK+SGLGKV
Sbjct:  315 LTDFPIDLDQYDRREQLKKSGLGKV 339

HSP 3 Score: 104.76 bits (260), Expect = 7.469e-21
Identity = 53/66 (80.30%), Postives = 59/66 (89.39%), Query Frame = 3

Query:  525 AGQSS--SRQLTSRPEATPLDFVIRPQSKIDPDEIRARAKQGSQDQHRMKMNKKLQQLRAPKKKQL 716
            +GQSS   RQ+T RPEATPLDF+IRPQSKIDPDEIRARAKQGSQDQ R+KMNKKLQQL+  KKK+L
Sbjct:  422 SGQSSRGDRQMTMRPEATPLDFLIRPQSKIDPDEIRARAKQGSQDQRRVKMNKKLQQLKGTKKKRL 487

[Close]

BLAST of GT623316 vs. TrEMBL
Match: Q9FVQ8_ARATH (Putative uncharacterized protein F3C3.8 OS=Arabidopsis thaliana GN=At1g32130 PE=1 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.595e-31
Identity = 56/69 (81.16%), Postives = 63/69 (91.30%), Query Frame = 2

Query:  185 QVIMFLSRSDEEINLNRKLAKDLVDKWSRPIFNKSTRFEDMRNIEDDRAPYRRPSVKKPANKAAGMESR 391
            +VIMFLS+SDEE N NR+LAKDLVDKWSRPIFNKSTRFEDMRN+++DR PYRRP VKKP+NKA  MESR
Sbjct:  239 KVIMFLSKSDEETNSNRRLAKDLVDKWSRPIFNKSTRFEDMRNLDEDRVPYRRPPVKKPSNKAT-MESR 306

HSP 2 Score: 45.0542 bits (105), Expect = 1.595e-31
Identity = 19/25 (76.00%), Postives = 24/25 (96.00%), Query Frame = 1

Query:    1 VSQFPIDLEQFDRREQLKRSGLGKV 75
            ++ FPIDL+Q+DRREQLK+SGLGKV
Sbjct:  216 LTDFPIDLDQYDRREQLKKSGLGKV 240

HSP 3 Score: 98.2117 bits (243), Expect = 6.991e-19
Identity = 51/66 (77.27%), Postives = 57/66 (86.36%), Query Frame = 3

Query:  525 AGQSS--SRQLTSRPEATPLDFVIRPQSKIDPDEIRARAKQGSQDQHRMKMNKKLQQLRAPKKKQL 716
            +GQSS   RQ+T RPEATPLDF+IRPQSKIDPDEI ARAKQ SQDQ R+KMNKKLQQL+  KKK+L
Sbjct:  323 SGQSSRGDRQMTMRPEATPLDFLIRPQSKIDPDEIIARAKQVSQDQRRVKMNKKLQQLKGTKKKRL 388

[Close]

BLAST of GT623316 vs. TrEMBL
Match: B9S1I4_RICCO (Transcription factor IWS1, putative OS=Ricinus communis GN=RCOM_0865340 PE=4 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 4.573e-31
Identity = 55/69 (79.71%), Postives = 63/69 (91.30%), Query Frame = 2

Query:  185 QVIMFLSRSDEEINLNRKLAKDLVDKWSRPIFNKSTRFEDMRNIEDDRAPYRRPSVKKPANKAAGMESR 391
            +VIMFLS+SDEE   NRKLAKDLVDKWSRPIFNKSTRFEDMRNI+DDRA +RRP+V++P N +AGMESR
Sbjct:  339 KVIMFLSKSDEETTSNRKLAKDLVDKWSRPIFNKSTRFEDMRNIDDDRA-FRRPTVRRPVNNSAGMESR 406

HSP 2 Score: 46.2098 bits (108), Expect = 4.573e-31
Identity = 20/25 (80.00%), Postives = 24/25 (96.00%), Query Frame = 1

Query:    1 VSQFPIDLEQFDRREQLKRSGLGKV 75
            ++ FPIDLEQ+DRREQLK+SGLGKV
Sbjct:  316 LTDFPIDLEQYDRREQLKKSGLGKV 340

HSP 3 Score: 104.375 bits (259), Expect = 9.755e-21
Identity = 52/66 (78.79%), Postives = 60/66 (90.91%), Query Frame = 3

Query:  522 RAGQSSSRQL-TSRPEATPLDFVIRPQSKIDPDEIRARAKQGSQDQHRMKMNKKLQQLRAPKKKQL 716
            R+GQSS+RQ   SRPEATPLDF++RPQSKIDP+E+RARAKQ  QDQ R+KMNKKLQQL+APKKKQL
Sbjct:  419 RSGQSSARQQHASRPEATPLDFLVRPQSKIDPEEVRARAKQVVQDQRRLKMNKKLQQLKAPKKKQL 484

[Close]

BLAST of GT623316 vs. TrEMBL
Match: B8AD88_ORYSI (Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_00379 PE=4 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 5.949e-31
Identity = 52/69 (75.36%), Postives = 62/69 (89.86%), Query Frame = 2

Query:  185 QVIMFLSRSDEEINLNRKLAKDLVDKWSRPIFNKSTRFEDMRNIEDDRAPYRRPSVKKPANKAAGMESR 391
            +VIMFLS+SDEE   NRKLAK+LVDKWSRPIFNKSTRFEDMR  +D+RAPYRRP +KKP++ ++GMESR
Sbjct:  376 KVIMFLSKSDEETTSNRKLAKELVDKWSRPIFNKSTRFEDMRRYDDERAPYRRPQMKKPSSSSSGMESR 444

HSP 2 Score: 46.2098 bits (108), Expect = 5.949e-31
Identity = 20/25 (80.00%), Postives = 24/25 (96.00%), Query Frame = 1

Query:    1 VSQFPIDLEQFDRREQLKRSGLGKV 75
            ++ FPIDLEQ+DRREQLK+SGLGKV
Sbjct:  353 LTDFPIDLEQYDRREQLKKSGLGKV 377

HSP 3 Score: 101.679 bits (252), Expect = 6.323e-20
Identity = 49/65 (75.38%), Postives = 57/65 (87.69%), Query Frame = 3

Query:  522 RAGQSSSRQLTSRPEATPLDFVIRPQSKIDPDEIRARAKQGSQDQHRMKMNKKLQQLRAPKKKQL 716
            ++GQ  +RQ  SRPEA+PLDFVIRPQSKIDP++IRARAKQ  QDQ R+KMNKKLQQL+APKKK L
Sbjct:  456 KSGQGGARQHASRPEASPLDFVIRPQSKIDPEQIRARAKQVVQDQRRLKMNKKLQQLKAPKKKNL 520

[Close]

BLAST of GT623316 vs. TrEMBL
Match: Q5ZDL8_ORYSJ (Os01g0147200 protein OS=Oryza sativa subsp. japonica GN=P0416D03.38-1 PE=4 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 5.949e-31
Identity = 52/69 (75.36%), Postives = 62/69 (89.86%), Query Frame = 2

Query:  185 QVIMFLSRSDEEINLNRKLAKDLVDKWSRPIFNKSTRFEDMRNIEDDRAPYRRPSVKKPANKAAGMESR 391
            +VIMFLS+SDEE   NRKLAK+LVDKWSRPIFNKSTRFEDMR  +D+RAPYRRP +KKP++ ++GMESR
Sbjct:  373 KVIMFLSKSDEETTSNRKLAKELVDKWSRPIFNKSTRFEDMRRYDDERAPYRRPQMKKPSSSSSGMESR 441

HSP 2 Score: 46.2098 bits (108), Expect = 5.949e-31
Identity = 20/25 (80.00%), Postives = 24/25 (96.00%), Query Frame = 1

Query:    1 VSQFPIDLEQFDRREQLKRSGLGKV 75
            ++ FPIDLEQ+DRREQLK+SGLGKV
Sbjct:  350 LTDFPIDLEQYDRREQLKKSGLGKV 374

HSP 3 Score: 101.679 bits (252), Expect = 6.323e-20
Identity = 49/65 (75.38%), Postives = 57/65 (87.69%), Query Frame = 3

Query:  522 RAGQSSSRQLTSRPEATPLDFVIRPQSKIDPDEIRARAKQGSQDQHRMKMNKKLQQLRAPKKKQL 716
            ++GQ  +RQ  SRPEA+PLDFVIRPQSKIDP++IRARAKQ  QDQ R+KMNKKLQQL+APKKK L
Sbjct:  453 KSGQGGARQHASRPEASPLDFVIRPQSKIDPEQIRARAKQVVQDQRRLKMNKKLQQLKAPKKKNL 517

[Close]

BLAST of GT623316 vs. TrEMBL
Match: B9ESV1_ORYSJ (Putative uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_00360 PE=4 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 5.956e-31
Identity = 52/69 (75.36%), Postives = 62/69 (89.86%), Query Frame = 2

Query:  185 QVIMFLSRSDEEINLNRKLAKDLVDKWSRPIFNKSTRFEDMRNIEDDRAPYRRPSVKKPANKAAGMESR 391
            +VIMFLS+SDEE   NRKLAK+LVDKWSRPIFNKSTRFEDMR  +D+RAPYRRP +KKP++ ++GMESR
Sbjct:  333 KVIMFLSKSDEETTSNRKLAKELVDKWSRPIFNKSTRFEDMRRYDDERAPYRRPQMKKPSSSSSGMESR 401

HSP 2 Score: 46.2098 bits (108), Expect = 5.956e-31
Identity = 20/25 (80.00%), Postives = 24/25 (96.00%), Query Frame = 1

Query:    1 VSQFPIDLEQFDRREQLKRSGLGKV 75
            ++ FPIDLEQ+DRREQLK+SGLGKV
Sbjct:  310 LTDFPIDLEQYDRREQLKKSGLGKV 334

HSP 3 Score: 101.679 bits (252), Expect = 6.323e-20
Identity = 49/65 (75.38%), Postives = 57/65 (87.69%), Query Frame = 3

Query:  522 RAGQSSSRQLTSRPEATPLDFVIRPQSKIDPDEIRARAKQGSQDQHRMKMNKKLQQLRAPKKKQL 716
            ++GQ  +RQ  SRPEA+PLDFVIRPQSKIDP++IRARAKQ  QDQ R+KMNKKLQQL+APKKK L
Sbjct:  413 KSGQGGARQHASRPEASPLDFVIRPQSKIDPEQIRARAKQVVQDQRRLKMNKKLQQLKAPKKKNL 477

[Close]

BLAST of GT623316 vs. TrEMBL
Match: B9MU81_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_836353 PE=4 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 5.989e-31
Identity = 54/69 (78.26%), Postives = 63/69 (91.30%), Query Frame = 2

Query:  185 QVIMFLSRSDEEINLNRKLAKDLVDKWSRPIFNKSTRFEDMRNIEDDRAPYRRPSVKKPANKAAGMESR 391
            +VIMFLS+SDEE   NRKLAKDLVDKWSRPIFNKSTRFEDMRN++DDRA +RRP+V++PAN + GMESR
Sbjct:  189 KVIMFLSKSDEETTSNRKLAKDLVDKWSRPIFNKSTRFEDMRNVDDDRA-FRRPTVRRPANNSTGMESR 256

HSP 2 Score: 46.2098 bits (108), Expect = 5.989e-31
Identity = 20/25 (80.00%), Postives = 24/25 (96.00%), Query Frame = 1

Query:    1 VSQFPIDLEQFDRREQLKRSGLGKV 75
            ++ FPIDLEQ+DRREQLK+SGLGKV
Sbjct:  166 LTDFPIDLEQYDRREQLKKSGLGKV 190

HSP 3 Score: 100.138 bits (248), Expect = 1.840e-19
Identity = 48/65 (73.85%), Postives = 56/65 (86.15%), Query Frame = 3

Query:  522 RAGQSSSRQLTSRPEATPLDFVIRPQSKIDPDEIRARAKQGSQDQHRMKMNKKLQQLRAPKKKQL 716
            R+ QSS RQ  SRP+ATPLDFV+RPQS+IDP+E+RA AKQ  QDQ R+KMNKKLQQL+ PKKKQL
Sbjct:  269 RSSQSSDRQHASRPDATPLDFVVRPQSRIDPEEVRACAKQVVQDQRRLKMNKKLQQLKGPKKKQL 333

[Close]

BLAST of GT623316 vs. TrEMBL
Match: B9GZK2_POPTR (Predicted protein (Fragment) OS=Populus trichocarpa GN=POPTRDRAFT_415152 PE=4 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 7.798e-31
Identity = 54/69 (78.26%), Postives = 63/69 (91.30%), Query Frame = 2

Query:  185 QVIMFLSRSDEEINLNRKLAKDLVDKWSRPIFNKSTRFEDMRNIEDDRAPYRRPSVKKPANKAAGMESR 391
            +VIMFLS+SDEE   NRKLAKDLVDKWSRPIFNKSTRFEDMRN+EDDRA +RRP+V++P+N +AGM SR
Sbjct:  193 KVIMFLSKSDEETTSNRKLAKDLVDKWSRPIFNKSTRFEDMRNVEDDRA-FRRPTVRRPSNNSAGMSSR 260

HSP 2 Score: 46.2098 bits (108), Expect = 7.798e-31
Identity = 20/25 (80.00%), Postives = 24/25 (96.00%), Query Frame = 1

Query:    1 VSQFPIDLEQFDRREQLKRSGLGKV 75
            ++ FPIDLEQ+DRREQLK+SGLGKV
Sbjct:  170 LTDFPIDLEQYDRREQLKKSGLGKV 194

HSP 3 Score: 103.219 bits (256), Expect = 2.173e-20
Identity = 49/65 (75.38%), Postives = 57/65 (87.69%), Query Frame = 3

Query:  522 RAGQSSSRQLTSRPEATPLDFVIRPQSKIDPDEIRARAKQGSQDQHRMKMNKKLQQLRAPKKKQL 716
            ++ QSS RQ  SRPEATPLDF++RPQSKIDP+E+RARAKQ  QDQ R+KMNKKLQQL+ PKKKQL
Sbjct:  273 KSSQSSDRQHASRPEATPLDFLVRPQSKIDPEEVRARAKQVVQDQRRLKMNKKLQQLKGPKKKQL 337

[Close]

BLAST of GT623316 vs. TAIR peptide
Match: AT1G32130.1 (| Symbols: IWS1, ATIWS1 | Transcription elongation factor (TFIIS) family protein | chr1:11559146-11561786 REVERSE LENGTH=502)

HSP 1 Score: 116.316 bits (290), Expect = 1.066e-33
Identity = 56/69 (81.16%), Postives = 63/69 (91.30%), Query Frame = 2

Query:  185 QVIMFLSRSDEEINLNRKLAKDLVDKWSRPIFNKSTRFEDMRNIEDDRAPYRRPSVKKPANKAAGMESR 391
            +VIMFLS+SDEE N NR+LAKDLVDKWSRPIFNKSTRFEDMRN+++DR PYRRP VKKP+NKA  MESR
Sbjct:  337 KVIMFLSKSDEETNSNRRLAKDLVDKWSRPIFNKSTRFEDMRNLDEDRVPYRRPPVKKPSNKAT-MESR 404

HSP 2 Score: 45.0542 bits (105), Expect = 1.066e-33
Identity = 19/25 (76.00%), Postives = 24/25 (96.00%), Query Frame = 1

Query:    1 VSQFPIDLEQFDRREQLKRSGLGKV 75
            ++ FPIDL+Q+DRREQLK+SGLGKV
Sbjct:  314 LTDFPIDLDQYDRREQLKKSGLGKV 338

HSP 3 Score: 98.2117 bits (243), Expect = 4.717e-21
Identity = 51/66 (77.27%), Postives = 57/66 (86.36%), Query Frame = 3

Query:  525 AGQSS--SRQLTSRPEATPLDFVIRPQSKIDPDEIRARAKQGSQDQHRMKMNKKLQQLRAPKKKQL 716
            +GQSS   RQ+T RPEATPLDF+IRPQSKIDPDEI ARAKQ SQDQ R+KMNKKLQQL+  KKK+L
Sbjct:  421 SGQSSRGDRQMTMRPEATPLDFLIRPQSKIDPDEIIARAKQVSQDQRRVKMNKKLQQLKGTKKKRL 486

[Close]

BLAST of GT623316 vs. TAIR peptide
Match: AT1G32130.2 (| Symbols: IWS1 | Transcription elongation factor (TFIIS) family protein | chr1:11559146-11561786 REVERSE LENGTH=493)

HSP 1 Score: 116.316 bits (290), Expect = 1.066e-33
Identity = 56/69 (81.16%), Postives = 63/69 (91.30%), Query Frame = 2

Query:  185 QVIMFLSRSDEEINLNRKLAKDLVDKWSRPIFNKSTRFEDMRNIEDDRAPYRRPSVKKPANKAAGMESR 391
            +VIMFLS+SDEE N NR+LAKDLVDKWSRPIFNKSTRFEDMRN+++DR PYRRP VKKP+NKA  MESR
Sbjct:  337 KVIMFLSKSDEETNSNRRLAKDLVDKWSRPIFNKSTRFEDMRNLDEDRVPYRRPPVKKPSNKAT-MESR 404

HSP 2 Score: 45.0542 bits (105), Expect = 1.066e-33
Identity = 19/25 (76.00%), Postives = 24/25 (96.00%), Query Frame = 1

Query:    1 VSQFPIDLEQFDRREQLKRSGLGKV 75
            ++ FPIDL+Q+DRREQLK+SGLGKV
Sbjct:  314 LTDFPIDLDQYDRREQLKKSGLGKV 338

HSP 3 Score: 79.7221 bits (195), Expect = 1.736e-15
Identity = 45/66 (68.18%), Postives = 50/66 (75.76%), Query Frame = 3

Query:  525 AGQSS--SRQLTSRPEATPLDFVIRPQSKIDPDEIRARAKQGSQDQHRMKMNKKLQQLRAPKKKQL 716
            +GQSS   RQ+T RPEATPLDF+IRPQSKIDPDEI ARAKQ         MNKKLQQL+  KKK+L
Sbjct:  421 SGQSSRGDRQMTMRPEATPLDFLIRPQSKIDPDEIIARAKQ---------MNKKLQQLKGTKKKRL 477

[Close]

BLAST of GT623316 vs. TAIR peptide
Match: AT4G19000.1 (| Symbols: IWS2, ATIWS2 | Transcription elongation factor (TFIIS) family protein | chr4:10405503-10407339 FORWARD LENGTH=406)

HSP 1 Score: 60.4622 bits (145), Expect = 7.999e-14
Identity = 32/71 (45.07%), Postives = 46/71 (64.79%), Query Frame = 2

Query:  185 QVIMFLSRSDEEINLNRKLAKDLVDKWSRPIFNKSTRFEDMRNIE--DDRAPYRRPSVKKPANKAAGMESR 391
            +VIMFLS+SDEE   NR+LA D+++KW R I+NKSTR+++M   E  D++         K A K +G  +R
Sbjct:  251 KVIMFLSKSDEETTPNRRLANDIINKWGRIIYNKSTRYDNMFTQEELDEQRQILLRRQTKTAPKVSGTRAR 321

HSP 2 Score: 33.8834 bits (76), Expect = 7.999e-14
Identity = 16/25 (64.00%), Postives = 20/25 (80.00%), Query Frame = 1

Query:    1 VSQFPIDLEQFDRREQLKRSGLGKV 75
            ++ F IDL+Q  RREQL +SGLGKV
Sbjct:  228 LNDFRIDLDQDSRREQLIKSGLGKV 252

The following BLAST results are available for this feature:

BLAST of GT623316 vs. TrEMBL
BLAST of GT623316 vs. TAIR peptide

BLAST of GT623316 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Lens culinaris unigene v1 vs Trembl)
Total hits: 10


Match Name	E-value	Identity	Description
A5BWS3_VITVI	2.320e-33	82.61	Putative uncharacterized protein OS=Vitis vinifera...	[more]
D7TPD7_VITVI	2.320e-33	82.61	Whole genome shotgun sequence of line PN40024, sca...	[more]
D7KHG1_ARALY	1.590e-31	81.16	Putative uncharacterized protein OS=Arabidopsis ly...	[more]
Q9FVQ8_ARATH	1.595e-31	81.16	Putative uncharacterized protein F3C3.8 OS=Arabido...	[more]
B9S1I4_RICCO	4.573e-31	79.71	Transcription factor IWS1, putative OS=Ricinus com...	[more]
B8AD88_ORYSI	5.949e-31	75.36	Putative uncharacterized protein OS=Oryza sativa s...	[more]
Q5ZDL8_ORYSJ	5.949e-31	75.36	Os01g0147200 protein OS=Oryza sativa subsp. japoni...	[more]
B9ESV1_ORYSJ	5.956e-31	75.36	Putative uncharacterized protein OS=Oryza sativa s...	[more]
B9MU81_POPTR	5.989e-31	78.26	Predicted protein OS=Populus trichocarpa GN=POPTRD...	[more]
B9GZK2_POPTR	7.798e-31	78.26	Predicted protein (Fragment) OS=Populus trichocarp...	[more]

BLAST of GT623316 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Lens culinaris unigene v1 vs TAIR 10 peptide)
Total hits: 3


Match Name	E-value	Identity	Description
AT1G32130.1	1.066e-33	81.16	\| Symbols: IWS1, ATIWS1 \| Transcription elongation...	[more]
AT1G32130.2	1.066e-33	81.16	\| Symbols: IWS1 \| Transcription elongation factor ...	[more]
AT4G19000.1	7.999e-14	45.07	\| Symbols: IWS2, ATIWS2 \| Transcription elongation...	[more]

InterPro

Analysis Name: InterProScan analysis for Lens culinaris unigene v1
Date Performed: 2011-01-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR017923	Transcription factor IIS, N-terminal	PFAM	PF08711	Med26	coord: 2..32 score: 1
IPR017923	Transcription factor IIS, N-terminal	PROFILE	PS51319	TFIIS_N	coord: 1..34 score: 11

Properties


Property Name	Value
Singlet in analysis	Lens culinaris unigene v1

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>GT623316 ID=GT623316; Name=GT623316; organism=Lens culinaris; type=EST; length=718bp
GTATCGCAGTTTCCCATAGACCTAGAGCAGTTTGATAGAAGAGAACAGCT
GAAGAGGAGTGGTCTTGGGAAGGTGGGTTTCTGTTGATTTGATGATGTGA
ACAAAACAACAGGGAGGTGCCTACATGTAGCCTGTTATTGGAATTTGGAA
GTAATATCTGAGACCAAGATTTTCATTGTTTTGACAGGTGATTATGTTCT
TATCAAGGTCCGATGAAGAAATCAATCTAAATAGGAAATTAGCCAAAGAT
TTGGTTGATAAATGGAGCCGACCTATTTTTAATAAGAGTACTCGGTTTGA
AGACATGCGTAATATTGAGGATGATAGGGCTCCATACAGGAGGCCATCTG
TTAAAAAGCCAGCAAATAAAGCTGCAGGGATGGAATCTAGAGATGGCGAT
CTTGATTTGGATCTTTCACAGTAGGGATTGAATGATGTTAATAAACTTCT
TTTGTTCAGTTTCTCTTTAGGAATCAGTGATTTATAGTTGTATGGTAAAT
TTCTAATTGTAATGCAGGCCTAGGGCTGGACAGTCGTCTTCCAGGCAACT
TACATCAAGGCCAGAAGCAACACCTTTGGATTTTGTGATCCGCCCCCAAT
CTAAAATTGACCCTGATGAAATTAGAGCACGTGCAAAACAAGGTTCACAA
GACCAGCATCGAATGAAGATGAACAAGAAATTGCAGCAGTTGAGGGCACC
AAAAAAGAAGCAGCTTCA

Annotated Terms

The following terms have been associated with this EST:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding
GO:0005515	protein binding
GO:0030528	obsolete transcription regulator activity

Vocabulary: **Cellular Component**
Term	Definition
GO:0005634	nucleus

Vocabulary: **Biological Process**
Term	Definition
GO:0006350	transcription

Vocabulary: **INTERPRO**
Term	Definition
IPR017923	TFIIS_N

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