GT623554
EST Overview
Unigenes
This EST is part of the following unigenes:
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of GT623554 vs. TrEMBL
Match: Q2PEQ5_TRIPR (Putative uncharacterized protein OS=Trifolium pratense PE=2 SV=1) HSP 1 Score: 108.997 bits (271), Expect = 1.608e-22 Identity = 58/97 (59.79%), Postives = 58/97 (59.79%), Query Frame = 3 Query: 3 LSCKKENDEIFAKLGSXXXXXXXXXXXXXXXXXLSINEFLKPAEGEKYYNPXXXXXXXXXXXXXXXXXXXXXXNAYSNVPAPSIEDPGQFPTLGGGK 293 LSCKKENDEIFAKLGS LSINEFLKPAEGEKYYNP NAYSNVPAPSIEDPGQFPTLGGGK Sbjct: 275 LSCKKENDEIFAKLGSDKDKRKDAFEKEKAKKALSINEFLKPAEGEKYYNPGGRGGRGGRGGRGGSRGGGYGGNAYSNVPAPSIEDPGQFPTLGGGK 371
BLAST of GT623554 vs. TrEMBL
Match: O04237_VICFA (Transcription factor OS=Vicia faba var. minor PE=2 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 1.970e-12 Identity = 47/95 (49.47%), Postives = 50/95 (52.63%), Query Frame = 3 Query: 3 LSCKKENDEIFAKLGSXXXXXXXXXXXXXXXXX-LSINEFLKPAEGEKYYNPXXXXXXXXXXXXXXXXXXXXXXNAYSNVPAPSIEDPGQFPTLG 284 LSCKK+N EIFAKLGS +SINEFLKPAEGE YYN N+ SNVPAPSIEDPG FPTLG Sbjct: 275 LSCKKDNFEIFAKLGSDKDKRKEAFDKEEKAKKSVSINEFLKPAEGEGYYNQGGRGGRGRGRGTRGGFGGFRG-NSTSNVPAPSIEDPGHFPTLG 368
BLAST of GT623554 vs. TrEMBL
Match: D7TGB6_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_620.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00002125001 PE=4 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 2.573e-12 Identity = 45/96 (46.88%), Postives = 50/96 (52.08%), Query Frame = 3 Query: 3 LSCKKENDEIFAKLGSXXXXXXXXXXXXXXXXX-LSINEFLKPAEGEKYYNPXXXXXXXXXXXXXXXXXXXXXXNAYSNVPAPSIEDPGQFPTLGG 287 LS KK+ND++F KLGS +SINEFLKPAEGE+YY N YSNV APSIEDPGQFPTLGG Sbjct: 274 LSSKKDNDDVFIKLGSEKDKRKELADKEERAKKSVSINEFLKPAEGERYYG-------GRGRGRGRGTRGGFAGNTYSNVAAPSIEDPGQFPTLGG 362
BLAST of GT623554 vs. TrEMBL
Match: A5C0U0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_016687 PE=4 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 2.573e-12 Identity = 45/96 (46.88%), Postives = 50/96 (52.08%), Query Frame = 3 Query: 3 LSCKKENDEIFAKLGSXXXXXXXXXXXXXXXXX-LSINEFLKPAEGEKYYNPXXXXXXXXXXXXXXXXXXXXXXNAYSNVPAPSIEDPGQFPTLGG 287 LS KK+ND++F KLGS +SINEFLKPAEGE+YY N YSNV APSIEDPGQFPTLGG Sbjct: 274 LSSKKDNDDVFIKLGSEKDKRKELADKEERAKKSVSINEFLKPAEGERYYG-------GRGRGCGRGTRGGFAGNTYSNVAAPSIEDPGQFPTLGG 362
BLAST of GT623554 vs. TrEMBL
Match: D7SLZ5_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_21.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00018290001 PE=4 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 2.178e-11 Identity = 45/95 (47.37%), Postives = 50/95 (52.63%), Query Frame = 3 Query: 3 LSCKKENDEIFAKLGSXXXXXXXXXXXXXXXXX-LSINEFLKPAEGEKYYNPXXXXXXXXXXXXXXXXXXXXXXNAYSNVPAPSIEDPGQFPTLG 284 LS KK ND+IF KLGS +SINEFLKPAEGE++Y+P NA SNV APSIEDPGQFPTLG Sbjct: 269 LSSKKGNDDIFIKLGSDKDKRKEAAEKEERAKKAVSINEFLKPAEGERFYSPGGRGRGRGRGSRGGYGGG----NAMSNVAAPSIEDPGQFPTLG 359
BLAST of GT623554 vs. TrEMBL
Match: B9GP69_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_830328 PE=4 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 8.276e-11 Identity = 42/95 (44.21%), Postives = 50/95 (52.63%), Query Frame = 3 Query: 3 LSCKKENDEIFAKLGSXXXXXXXXXXXXXXXXXLSINEFLKPAEGEKYYNPXXXXXXXXXXXXXXXXXXXXXXNAYSNVPAPSIEDPGQFPTLGG 287 +S KKEN+++F KLGS +SINEFLKPAEGE+Y+ + SNVPAPSIEDPGQFPTLGG Sbjct: 272 ISSKKENNDVFIKLGSDKDKRKEASEKAKKS--VSINEFLKPAEGERYHGSGGRGRGRGRGARGFGNR-----DGISNVPAPSIEDPGQFPTLGG 359
BLAST of GT623554 vs. TrEMBL
Match: A9PCV9_POPTR (Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 8.276e-11 Identity = 42/95 (44.21%), Postives = 50/95 (52.63%), Query Frame = 3 Query: 3 LSCKKENDEIFAKLGSXXXXXXXXXXXXXXXXXLSINEFLKPAEGEKYYNPXXXXXXXXXXXXXXXXXXXXXXNAYSNVPAPSIEDPGQFPTLGG 287 +S KKEN+++F KLGS +SINEFLKPAEGE+Y+ + SNVPAPSIEDPGQFPTLGG Sbjct: 271 ISSKKENNDVFIKLGSDKDKRKEASEKAKKS--VSINEFLKPAEGERYHGSGGRGRGRGRGARGFGNR-----DGISNVPAPSIEDPGQFPTLGG 358
BLAST of GT623554 vs. TrEMBL
Match: B9MV71_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_1110119 PE=4 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 4.108e-10 Identity = 43/101 (42.57%), Postives = 50/101 (49.50%), Query Frame = 3 Query: 3 LSCKKENDEIFAKLGSXXXXXXXXXXXXXXXXX-LSINEFLKPAEGEKYYNP-----XXXXXXXXXXXXXXXXXXXXXXNAYSNVPAPSIEDPGQFPTLGG 287 LS KKEN+++F KLGS +SINEFLKPAEGE+YY + S+VPAPSIEDPGQFPTLGG Sbjct: 272 LSNKKENNDVFIKLGSDKDKRKEAYEKDEKAKKSVSINEFLKPAEGERYYGSGSRGRGRGRGARGFGNRDGMSSGFGNRDGMSSVPAPSIEDPGQFPTLGG 372
BLAST of GT623554 vs. TrEMBL
Match: B9GYN7_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_830730 PE=4 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 4.108e-10 Identity = 44/96 (45.83%), Postives = 48/96 (50.00%), Query Frame = 3 Query: 3 LSCKKENDEIFAKLGSXXXXXXXXXXXXXXXXX-LSINEFLKPAEGEKYYNPXXXXXXXXXXXXXXXXXXXXXXNAYSNVPAPSIEDPGQFPTLGG 287 LS KK NDEIF KLGS +SINEFLKPAEGE+ YN NA +V APSIEDPGQFP+LGG Sbjct: 268 LSSKKSNDEIFIKLGSEKDKRKDAADKEDRAKKAVSINEFLKPAEGERSYNSGRGGRGRGRGRGGYGSGSGYGSNA-RDVAAPSIEDPGQFPSLGG 362
BLAST of GT623554 vs. TrEMBL
Match: A9PDA1_POPTR (Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 4.108e-10 Identity = 43/101 (42.57%), Postives = 50/101 (49.50%), Query Frame = 3 Query: 3 LSCKKENDEIFAKLGSXXXXXXXXXXXXXXXXX-LSINEFLKPAEGEKYYNP-----XXXXXXXXXXXXXXXXXXXXXXNAYSNVPAPSIEDPGQFPTLGG 287 LS KKEN+++F KLGS +SINEFLKPAEGE+YY + S+VPAPSIEDPGQFPTLGG Sbjct: 272 LSNKKENNDVFIKLGSDKDKRKEAYEKDEKAKKSVSINEFLKPAEGERYYGSGSRGRGRGRGARGFGNRDGMSSGFGNRDGMSSVPAPSIEDPGQFPTLGG 372
BLAST of GT623554 vs. TAIR peptide
Match: AT4G16830.3 (| Symbols: | Hyaluronan / mRNA binding family | chr4:9470652-9472308 FORWARD LENGTH=345) HSP 1 Score: 54.6842 bits (130), Expect = 2.464e-8 Identity = 38/95 (40.00%), Postives = 41/95 (43.16%), Query Frame = 3 Query: 3 LSCKKENDEIFAKLGSXXXXXXXXXXXXXXXXXLSINEFLKPAEGEKYYNPXXXXXXXXXXXXXXXXXXXXXXNAYSNVPAPSIEDPGQFPTLGG 287 LS KK NDEIF KLGS +SINEFLKPAEG YY Y N AP+I D QFP+LGG Sbjct: 253 LSNKKSNDEIFIKLGSDKDKRKDDKEEKAKKA-VSINEFLKPAEGGNYYR--GGRGGRGRGGRGRGGVSSGESGGYRNEAAPAIGDAAQFPSLGG 344
BLAST of GT623554 vs. TAIR peptide
Match: AT4G16830.2 (| Symbols: | Hyaluronan / mRNA binding family | chr4:9470979-9472308 FORWARD LENGTH=265) HSP 1 Score: 54.6842 bits (130), Expect = 2.464e-8 Identity = 38/95 (40.00%), Postives = 41/95 (43.16%), Query Frame = 3 Query: 3 LSCKKENDEIFAKLGSXXXXXXXXXXXXXXXXXLSINEFLKPAEGEKYYNPXXXXXXXXXXXXXXXXXXXXXXNAYSNVPAPSIEDPGQFPTLGG 287 LS KK NDEIF KLGS +SINEFLKPAEG YY Y N AP+I D QFP+LGG Sbjct: 173 LSNKKSNDEIFIKLGSDKDKRKDDKEEKAKKA-VSINEFLKPAEGGNYYR--GGRGGRGRGGRGRGGVSSGESGGYRNEAAPAIGDAAQFPSLGG 264
BLAST of GT623554 vs. TAIR peptide
Match: AT4G16830.1 (| Symbols: | Hyaluronan / mRNA binding family | chr4:9470621-9472308 FORWARD LENGTH=355) HSP 1 Score: 54.6842 bits (130), Expect = 2.464e-8 Identity = 38/95 (40.00%), Postives = 41/95 (43.16%), Query Frame = 3 Query: 3 LSCKKENDEIFAKLGSXXXXXXXXXXXXXXXXXLSINEFLKPAEGEKYYNPXXXXXXXXXXXXXXXXXXXXXXNAYSNVPAPSIEDPGQFPTLGG 287 LS KK NDEIF KLGS +SINEFLKPAEG YY Y N AP+I D QFP+LGG Sbjct: 263 LSNKKSNDEIFIKLGSDKDKRKDDKEEKAKKA-VSINEFLKPAEGGNYYR--GGRGGRGRGGRGRGGVSSGESGGYRNEAAPAIGDAAQFPSLGG 354 The following BLAST results are available for this feature:
BLAST of GT623554 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Lens culinaris unigene v1 vs Trembl) Total hits: 10
BLAST of GT623554 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Lens culinaris unigene v1 vs TAIR 10 peptide) Total hits: 3
InterPro
Analysis Name: InterProScan analysis for Lens culinaris unigene v1
Date Performed: 2011-01-06
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >GT623554 ID=GT623554; Name=GT623554; organism=Lens culinaris; type=EST; length=446bpback to top |