GT623554

EST Overview
NameGT623554
Unique NameGT623554
TypeEST
OrganismLens culinaris (lentil)
Sequence length446
Unigenes
This EST is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Lens culinaris unigene v1Lens culinaris unigene v1EST
Libraries
Library NameType
LIBEST_025390 LCUSE1NGcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
Lens culinaris unigene v12010-12-27
Homology Analysis: Lens culinaris unigene v1 vs Trembl2010-12-28
Homology Analysis: Lens culinaris unigene v1 vs TAIR 10 peptide2011-02-03
InterProScan analysis for Lens culinaris unigene v12011-01-06
Homology
BLAST of GT623554 vs. TrEMBL
Match: Q2PEQ5_TRIPR (Putative uncharacterized protein OS=Trifolium pratense PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.608e-22
Identity = 58/97 (59.79%), Postives = 58/97 (59.79%), Query Frame = 3
Query:    3 LSCKKENDEIFAKLGSXXXXXXXXXXXXXXXXXLSINEFLKPAEGEKYYNPXXXXXXXXXXXXXXXXXXXXXXNAYSNVPAPSIEDPGQFPTLGGGK 293
            LSCKKENDEIFAKLGS                 LSINEFLKPAEGEKYYNP                      NAYSNVPAPSIEDPGQFPTLGGGK
Sbjct:  275 LSCKKENDEIFAKLGSDKDKRKDAFEKEKAKKALSINEFLKPAEGEKYYNPGGRGGRGGRGGRGGSRGGGYGGNAYSNVPAPSIEDPGQFPTLGGGK 371          
BLAST of GT623554 vs. TrEMBL
Match: O04237_VICFA (Transcription factor OS=Vicia faba var. minor PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.970e-12
Identity = 47/95 (49.47%), Postives = 50/95 (52.63%), Query Frame = 3
Query:    3 LSCKKENDEIFAKLGSXXXXXXXXXXXXXXXXX-LSINEFLKPAEGEKYYNPXXXXXXXXXXXXXXXXXXXXXXNAYSNVPAPSIEDPGQFPTLG 284
            LSCKK+N EIFAKLGS                  +SINEFLKPAEGE YYN                       N+ SNVPAPSIEDPG FPTLG
Sbjct:  275 LSCKKDNFEIFAKLGSDKDKRKEAFDKEEKAKKSVSINEFLKPAEGEGYYNQGGRGGRGRGRGTRGGFGGFRG-NSTSNVPAPSIEDPGHFPTLG 368          
BLAST of GT623554 vs. TrEMBL
Match: D7TGB6_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_620.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00002125001 PE=4 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.573e-12
Identity = 45/96 (46.88%), Postives = 50/96 (52.08%), Query Frame = 3
Query:    3 LSCKKENDEIFAKLGSXXXXXXXXXXXXXXXXX-LSINEFLKPAEGEKYYNPXXXXXXXXXXXXXXXXXXXXXXNAYSNVPAPSIEDPGQFPTLGG 287
            LS KK+ND++F KLGS                  +SINEFLKPAEGE+YY                        N YSNV APSIEDPGQFPTLGG
Sbjct:  274 LSSKKDNDDVFIKLGSEKDKRKELADKEERAKKSVSINEFLKPAEGERYYG-------GRGRGRGRGTRGGFAGNTYSNVAAPSIEDPGQFPTLGG 362          
BLAST of GT623554 vs. TrEMBL
Match: A5C0U0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_016687 PE=4 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.573e-12
Identity = 45/96 (46.88%), Postives = 50/96 (52.08%), Query Frame = 3
Query:    3 LSCKKENDEIFAKLGSXXXXXXXXXXXXXXXXX-LSINEFLKPAEGEKYYNPXXXXXXXXXXXXXXXXXXXXXXNAYSNVPAPSIEDPGQFPTLGG 287
            LS KK+ND++F KLGS                  +SINEFLKPAEGE+YY                        N YSNV APSIEDPGQFPTLGG
Sbjct:  274 LSSKKDNDDVFIKLGSEKDKRKELADKEERAKKSVSINEFLKPAEGERYYG-------GRGRGCGRGTRGGFAGNTYSNVAAPSIEDPGQFPTLGG 362          
BLAST of GT623554 vs. TrEMBL
Match: D7SLZ5_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_21.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00018290001 PE=4 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.178e-11
Identity = 45/95 (47.37%), Postives = 50/95 (52.63%), Query Frame = 3
Query:    3 LSCKKENDEIFAKLGSXXXXXXXXXXXXXXXXX-LSINEFLKPAEGEKYYNPXXXXXXXXXXXXXXXXXXXXXXNAYSNVPAPSIEDPGQFPTLG 284
            LS KK ND+IF KLGS                  +SINEFLKPAEGE++Y+P                      NA SNV APSIEDPGQFPTLG
Sbjct:  269 LSSKKGNDDIFIKLGSDKDKRKEAAEKEERAKKAVSINEFLKPAEGERFYSPGGRGRGRGRGSRGGYGGG----NAMSNVAAPSIEDPGQFPTLG 359          
BLAST of GT623554 vs. TrEMBL
Match: B9GP69_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_830328 PE=4 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 8.276e-11
Identity = 42/95 (44.21%), Postives = 50/95 (52.63%), Query Frame = 3
Query:    3 LSCKKENDEIFAKLGSXXXXXXXXXXXXXXXXXLSINEFLKPAEGEKYYNPXXXXXXXXXXXXXXXXXXXXXXNAYSNVPAPSIEDPGQFPTLGG 287
            +S KKEN+++F KLGS                 +SINEFLKPAEGE+Y+                        +  SNVPAPSIEDPGQFPTLGG
Sbjct:  272 ISSKKENNDVFIKLGSDKDKRKEASEKAKKS--VSINEFLKPAEGERYHGSGGRGRGRGRGARGFGNR-----DGISNVPAPSIEDPGQFPTLGG 359          
BLAST of GT623554 vs. TrEMBL
Match: A9PCV9_POPTR (Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 8.276e-11
Identity = 42/95 (44.21%), Postives = 50/95 (52.63%), Query Frame = 3
Query:    3 LSCKKENDEIFAKLGSXXXXXXXXXXXXXXXXXLSINEFLKPAEGEKYYNPXXXXXXXXXXXXXXXXXXXXXXNAYSNVPAPSIEDPGQFPTLGG 287
            +S KKEN+++F KLGS                 +SINEFLKPAEGE+Y+                        +  SNVPAPSIEDPGQFPTLGG
Sbjct:  271 ISSKKENNDVFIKLGSDKDKRKEASEKAKKS--VSINEFLKPAEGERYHGSGGRGRGRGRGARGFGNR-----DGISNVPAPSIEDPGQFPTLGG 358          
BLAST of GT623554 vs. TrEMBL
Match: B9MV71_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_1110119 PE=4 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.108e-10
Identity = 43/101 (42.57%), Postives = 50/101 (49.50%), Query Frame = 3
Query:    3 LSCKKENDEIFAKLGSXXXXXXXXXXXXXXXXX-LSINEFLKPAEGEKYYNP-----XXXXXXXXXXXXXXXXXXXXXXNAYSNVPAPSIEDPGQFPTLGG 287
            LS KKEN+++F KLGS                  +SINEFLKPAEGE+YY                             +  S+VPAPSIEDPGQFPTLGG
Sbjct:  272 LSNKKENNDVFIKLGSDKDKRKEAYEKDEKAKKSVSINEFLKPAEGERYYGSGSRGRGRGRGARGFGNRDGMSSGFGNRDGMSSVPAPSIEDPGQFPTLGG 372          
BLAST of GT623554 vs. TrEMBL
Match: B9GYN7_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_830730 PE=4 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.108e-10
Identity = 44/96 (45.83%), Postives = 48/96 (50.00%), Query Frame = 3
Query:    3 LSCKKENDEIFAKLGSXXXXXXXXXXXXXXXXX-LSINEFLKPAEGEKYYNPXXXXXXXXXXXXXXXXXXXXXXNAYSNVPAPSIEDPGQFPTLGG 287
            LS KK NDEIF KLGS                  +SINEFLKPAEGE+ YN                       NA  +V APSIEDPGQFP+LGG
Sbjct:  268 LSSKKSNDEIFIKLGSEKDKRKDAADKEDRAKKAVSINEFLKPAEGERSYNSGRGGRGRGRGRGGYGSGSGYGSNA-RDVAAPSIEDPGQFPSLGG 362          
BLAST of GT623554 vs. TrEMBL
Match: A9PDA1_POPTR (Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.108e-10
Identity = 43/101 (42.57%), Postives = 50/101 (49.50%), Query Frame = 3
Query:    3 LSCKKENDEIFAKLGSXXXXXXXXXXXXXXXXX-LSINEFLKPAEGEKYYNP-----XXXXXXXXXXXXXXXXXXXXXXNAYSNVPAPSIEDPGQFPTLGG 287
            LS KKEN+++F KLGS                  +SINEFLKPAEGE+YY                             +  S+VPAPSIEDPGQFPTLGG
Sbjct:  272 LSNKKENNDVFIKLGSDKDKRKEAYEKDEKAKKSVSINEFLKPAEGERYYGSGSRGRGRGRGARGFGNRDGMSSGFGNRDGMSSVPAPSIEDPGQFPTLGG 372          
BLAST of GT623554 vs. TAIR peptide
Match: AT4G16830.3 (| Symbols: | Hyaluronan / mRNA binding family | chr4:9470652-9472308 FORWARD LENGTH=345)

HSP 1 Score: 54.6842 bits (130), Expect = 2.464e-8
Identity = 38/95 (40.00%), Postives = 41/95 (43.16%), Query Frame = 3
Query:    3 LSCKKENDEIFAKLGSXXXXXXXXXXXXXXXXXLSINEFLKPAEGEKYYNPXXXXXXXXXXXXXXXXXXXXXXNAYSNVPAPSIEDPGQFPTLGG 287
            LS KK NDEIF KLGS                 +SINEFLKPAEG  YY                          Y N  AP+I D  QFP+LGG
Sbjct:  253 LSNKKSNDEIFIKLGSDKDKRKDDKEEKAKKA-VSINEFLKPAEGGNYYR--GGRGGRGRGGRGRGGVSSGESGGYRNEAAPAIGDAAQFPSLGG 344          
BLAST of GT623554 vs. TAIR peptide
Match: AT4G16830.2 (| Symbols: | Hyaluronan / mRNA binding family | chr4:9470979-9472308 FORWARD LENGTH=265)

HSP 1 Score: 54.6842 bits (130), Expect = 2.464e-8
Identity = 38/95 (40.00%), Postives = 41/95 (43.16%), Query Frame = 3
Query:    3 LSCKKENDEIFAKLGSXXXXXXXXXXXXXXXXXLSINEFLKPAEGEKYYNPXXXXXXXXXXXXXXXXXXXXXXNAYSNVPAPSIEDPGQFPTLGG 287
            LS KK NDEIF KLGS                 +SINEFLKPAEG  YY                          Y N  AP+I D  QFP+LGG
Sbjct:  173 LSNKKSNDEIFIKLGSDKDKRKDDKEEKAKKA-VSINEFLKPAEGGNYYR--GGRGGRGRGGRGRGGVSSGESGGYRNEAAPAIGDAAQFPSLGG 264          
BLAST of GT623554 vs. TAIR peptide
Match: AT4G16830.1 (| Symbols: | Hyaluronan / mRNA binding family | chr4:9470621-9472308 FORWARD LENGTH=355)

HSP 1 Score: 54.6842 bits (130), Expect = 2.464e-8
Identity = 38/95 (40.00%), Postives = 41/95 (43.16%), Query Frame = 3
Query:    3 LSCKKENDEIFAKLGSXXXXXXXXXXXXXXXXXLSINEFLKPAEGEKYYNPXXXXXXXXXXXXXXXXXXXXXXNAYSNVPAPSIEDPGQFPTLGG 287
            LS KK NDEIF KLGS                 +SINEFLKPAEG  YY                          Y N  AP+I D  QFP+LGG
Sbjct:  263 LSNKKSNDEIFIKLGSDKDKRKDDKEEKAKKA-VSINEFLKPAEGGNYYR--GGRGGRGRGGRGRGGVSSGESGGYRNEAAPAIGDAAQFPSLGG 354          
The following BLAST results are available for this feature:
BLAST of GT623554 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Lens culinaris unigene v1 vs Trembl)
Total hits: 10
Match NameE-valueIdentityDescription
Q2PEQ5_TRIPR1.608e-2259.79Putative uncharacterized protein OS=Trifolium prat... [more]
O04237_VICFA1.970e-1249.47Transcription factor OS=Vicia faba var. minor PE=2... [more]
D7TGB6_VITVI2.573e-1246.88Whole genome shotgun sequence of line PN40024, sca... [more]
A5C0U0_VITVI2.573e-1246.88Putative uncharacterized protein OS=Vitis vinifera... [more]
D7SLZ5_VITVI2.178e-1147.37Whole genome shotgun sequence of line PN40024, sca... [more]
B9GP69_POPTR8.276e-1144.21Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]
A9PCV9_POPTR8.276e-1144.21Putative uncharacterized protein OS=Populus tricho... [more]
B9MV71_POPTR4.108e-1042.57Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]
B9GYN7_POPTR4.108e-1045.83Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]
A9PDA1_POPTR4.108e-1042.57Putative uncharacterized protein OS=Populus tricho... [more]
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BLAST of GT623554 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Lens culinaris unigene v1 vs TAIR 10 peptide)
Total hits: 3
Match NameE-valueIdentityDescription
AT4G16830.32.464e-840.00| Symbols: | Hyaluronan / mRNA binding family | c... [more]
AT4G16830.22.464e-840.00| Symbols: | Hyaluronan / mRNA binding family | c... [more]
AT4G16830.12.464e-840.00| Symbols: | Hyaluronan / mRNA binding family | c... [more]
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InterPro
Analysis Name: InterProScan analysis for Lens culinaris unigene v1
Date Performed: 2011-01-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSEGsegsegcoord: 11..34
score
NoneNo IPR availablePANTHERPTHR12299HYALURONIC ACID-BINDING PROTEIN 4coord: 1..94
score: 3.9
NoneNo IPR availablePANTHERPTHR12299:SF4NUCLEAR RNA BINDING PROTEIN A-LIKE PROTEINcoord: 1..94
score: 3.9
NoneNo IPR availableSEGsegsegcoord: 17..33
score: NAcoord: 52..73
score
NoneNo IPR availableSEGsegsegcoord: 1..13
score

Properties
Property NameValue
Singlet in analysisLens culinaris unigene v1
Sequences
The following sequences are available for this feature:

EST sequence

>GT623554 ID=GT623554; Name=GT623554; organism=Lens culinaris; type=EST; length=446bp
CACTTTCATGCAAGAAAGAAAATGATGAGATCTTTGCTAAACTGGGATCT
GACAAGGACAAACGCAAAGACGCCTTTGAGAAGGAGAAGGCAAAGAAGGC
TCTGAGCATCAATGAGTTTCTGAAGCCAGCTGAAGGAGAGAAGTATTACA
ACCCAGGTGGTCGTGGTGGTCGCGGACGTGGGGGACGTGGTGGTTCAAGA
GGAGGAGGAGGTTATGGTGGAAATGCATACAGTAATGTGCCAGCCCCATC
TATTGAGGATCCTGGTCAATTCCCGACCTTGGGTGGTGGCAAGTGAAATA
ATATTTCCGAACCGTTTCCCCTATCCCTTTATTTACCTTCAATTTTGGGT
TCTCTTATTTGAACTTCTTAAGACAAAGACATCTTTTGGCAATTGGATTT
TAATGTTATGAGTTAGAAGAATCTTTATTTAACTGTTTTTTGGATG
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