GT620253

EST Overview
NameGT620253
Unique NameGT620253
TypeEST
OrganismLens culinaris (lentil)
Sequence length633
Unigenes
This EST is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Lens culinaris unigene v1Lens culinaris unigene v1EST
Libraries
Library NameType
LIBEST_025390 LCUSE1NGcdna_library
Homology
BLAST of GT620253 vs. TrEMBL
Match: B9SMV4_RICCO (Double-stranded RNA binding protein, putative OS=Ricinus communis GN=RCOM_0471170 PE=4 SV=1)

HSP 1 Score: 60.8474 bits (146), Expect = 9.405e-8
Identity = 23/40 (57.50%), Postives = 33/40 (82.50%), Query Frame = -3
Query:  365 ESKLYRSCIANHWKPPVFECCKEEGPHRCRMFTSKAIIEI 484
            +S+L+  C+AN+WKPP++ECCKEEGP   R+FT K I+E+
Sbjct:  131 KSQLHEICVANNWKPPLYECCKEEGPCHQRLFTFKVIVEM 170          
BLAST of GT620253 vs. TrEMBL
Match: D7T528_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_149.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00001045001 PE=4 SV=1)

HSP 1 Score: 58.9214 bits (141), Expect = 3.574e-7
Identity = 22/41 (53.66%), Postives = 31/41 (75.61%), Query Frame = -3
Query:  362 ESKLYRSCIANHWKPPVFECCKEEGPHRCRMFTSKAIIEIE 484
            ++++Y  C AN+WKPP FECCKEEGP   ++FT K  ++IE
Sbjct: 1540 KARMYEICAANYWKPPSFECCKEEGPSHLKLFTVKLTMKIE 1580          
BLAST of GT620253 vs. SwissProt
Match: DCL4_ARATH (Dicer-like protein 4 OS=Arabidopsis thaliana GN=DCL4 PE=1 SV=1)

HSP 1 Score: 56.6102 bits (135), Expect = 1.239e-7
Identity = 22/41 (53.66%), Postives = 30/41 (73.17%), Query Frame = -3
Query:  362 ESKLYRSCIANHWKPPVFECCKEEGPHRCRMFTSKAIIEIE 484
            +S L+ +C+AN WKPP FECC+EEGP   + F  K I+E+E
Sbjct: 1510 KSLLHETCVANCWKPPHFECCEEEGPGHLKSFVYKVILEVE 1550          
BLAST of GT620253 vs. SwissProt
Match: DCL4_ORYSJ (Endoribonuclease Dicer homolog 4 OS=Oryza sativa subsp. japonica GN=DCL4 PE=2 SV=1)

HSP 1 Score: 54.6842 bits (130), Expect = 4.706e-7
Identity = 23/45 (51.11%), Postives = 30/45 (66.67%), Query Frame = -3
Query:  347 SKLYRSCIANHWKPPVFECCKEEGPHRCRMFTSKAIIEIETNKAS 481
            S L+  C AN+WKPP F+ CKEEGP   R FT K ++EI+   A+
Sbjct: 1572 SFLFELCAANYWKPPEFKLCKEEGPSHLRKFTYKVVVEIKGASAT 1616          
BLAST of GT620253 vs. TAIR peptide
Match: AT5G20320.2 (| Symbols: DCL4 | dicer-like 4 | chr5:6859571-6869068 REVERSE LENGTH=1688)

HSP 1 Score: 56.6102 bits (135), Expect = 1.277e-8
Identity = 22/41 (53.66%), Postives = 30/41 (73.17%), Query Frame = -3
Query:  362 ESKLYRSCIANHWKPPVFECCKEEGPHRCRMFTSKAIIEIE 484
            +S L+ +C+AN WKPP FECC+EEGP   + F  K I+E+E
Sbjct: 1609 KSLLHETCVANCWKPPHFECCEEEGPGHLKSFVYKVILEVE 1649          
BLAST of GT620253 vs. TAIR peptide
Match: AT5G20320.1 (| Symbols: DCL4, ATDCL4 | dicer-like 4 | chr5:6859571-6869068 REVERSE LENGTH=1702)

HSP 1 Score: 56.6102 bits (135), Expect = 1.277e-8
Identity = 22/41 (53.66%), Postives = 30/41 (73.17%), Query Frame = -3
Query:  362 ESKLYRSCIANHWKPPVFECCKEEGPHRCRMFTSKAIIEIE 484
            +S L+ +C+AN WKPP FECC+EEGP   + F  K I+E+E
Sbjct: 1623 KSLLHETCVANCWKPPHFECCEEEGPGHLKSFVYKVILEVE 1663          
The following BLAST results are available for this feature:
BLAST of GT620253 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Lens culinaris unigene v1 vs Trembl)
Total hits: 2
Match NameE-valueIdentityDescription
B9SMV4_RICCO9.405e-857.50Double-stranded RNA binding protein, putative OS=R... [more]
D7T528_VITVI3.574e-753.66Whole genome shotgun sequence of line PN40024, sca... [more]
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BLAST of GT620253 vs. SwissProt
Analysis Date: 2010-12-28 (Homology Analysis: Lens culinaris unigene v1 vs Swissprot)
Total hits: 2
Match NameE-valueIdentityDescription
DCL4_ARATH1.239e-753.66Dicer-like protein 4 OS=Arabidopsis thaliana GN=DC... [more]
DCL4_ORYSJ4.706e-751.11Endoribonuclease Dicer homolog 4 OS=Oryza sativa s... [more]
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BLAST of GT620253 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Lens culinaris unigene v1 vs TAIR 10 peptide)
Total hits: 2
Match NameE-valueIdentityDescription
AT5G20320.21.277e-853.66| Symbols: DCL4 | dicer-like 4 | chr5:6859571-6869... [more]
AT5G20320.11.277e-853.66| Symbols: DCL4, ATDCL4 | dicer-like 4 | chr5:6859... [more]
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InterPro
Analysis Name: InterProScan analysis for Lens culinaris unigene v1
Date Performed: 2011-01-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSEGsegsegcoord: 6..12
score
NoneNo IPR availableSEGsegsegcoord: 26..34
score
IPR014720Double-stranded RNA-binding-likeGENE3D3.30.160.20no descriptioncoord: 10..47
score: 3.5

Properties
Property NameValue
Singlet in analysisLens culinaris unigene v1
Sequences
The following sequences are available for this feature:

EST sequence

>GT620253 ID=GT620253; Name=GT620253; organism=Lens culinaris; type=EST; length=633bp
GAAAACTGCCTCAGTCCGTATCAGACATAGGAAGTTTCTTTTGTGCAGAA
CGGTGAACCTCGTGAATAGTGGTGATCTAAGTGATGTTTTGGGTATCAGA
AAAATAGTCGCCGAACTTTCATAGCAAACTTCAGTGCCTCTACAAGGTCG
TCAGTCTGTATCTATTCTCAGCAATTTCTTTTGCCCTCAGAGCATCATCC
TTATTGCACTGCAACACGACTGCGTGAGTATTGTATCCTCTGCGAAATTT
TTGGTGCATTGGTGGTTTTGGTGTTTGCTGAGTTGAACCGTTGTGACCGC
TGGCTCTTCGGGTTCTGGAAGCAATTGGAATGCGTATGAAAGGCCTAGAT
GCTTTATTTGTCTCTATTTCAATAATAGCCTTGGATGTGAACATTCTACA
ACGATGCGGTCCTTCCTCTTTACAACATTCAAACACAGGAGGCTTCCAAT
GATTTGCAATACAGCTCCTATACAACTTTGATTCACCTTGGAATAGTATT
AGCAAAACTTATGTATTTGGTTCTGACTTATTTTGCTTCTTCTTTTTTTT
GTTTAATGACATTTCAGCTACTGCGCAAATGGAGGTGACGAATTGGCGAT
GTCCATGGTGTTCAACGAAGGTTTTGATTCTGA
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Annotated Terms
The following terms have been associated with this EST:
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular anatomical structure
Vocabulary: INTERPRO
TermDefinition
IPR014720dsRBD_dom